Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04210

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04200 and PGA1_c04210 overlap by 4 nucleotidesPGA1_c04210 and PGA1_c04220 are separated by 48 nucleotidesPGA1_c04220 and PGA1_c04230 are separated by 43 nucleotides PGA1_c04200: PGA1_c04200 - phosphate uptake ABC transporter permease protein PhoE, at 407,650 to 408,519 _c04200 PGA1_c04210: PGA1_c04210 - phosphate uptake ABC transporter permease protein PhoT, at 408,516 to 409,886 _c04210 PGA1_c04220: PGA1_c04220 - putative phosphonate metabolism, at 409,935 to 410,549 _c04220 PGA1_c04230: PGA1_c04230 - putative phosphonates metabolism transcriptional regulator phnF, at 410,593 to 411,327 _c04230 Position (kb) 408 409 410Strain fitness (log2 ratio) -2 -1 0 1at 407.517 kb on + strandat 407.520 kb on + strandat 407.528 kb on - strandat 407.537 kb on + strandat 407.569 kb on - strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.571 kb on + strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.579 kb on - strandat 407.582 kb on - strandat 407.665 kb on + strandat 407.737 kb on - strand, within PGA1_c04200at 407.806 kb on + strand, within PGA1_c04200at 407.859 kb on + strand, within PGA1_c04200at 407.885 kb on - strand, within PGA1_c04200at 407.902 kb on + strand, within PGA1_c04200at 407.902 kb on + strand, within PGA1_c04200at 407.907 kb on + strand, within PGA1_c04200at 407.980 kb on + strand, within PGA1_c04200at 407.980 kb on + strand, within PGA1_c04200at 408.012 kb on - strand, within PGA1_c04200at 408.124 kb on - strand, within PGA1_c04200at 408.165 kb on + strand, within PGA1_c04200at 408.225 kb on - strand, within PGA1_c04200at 408.255 kb on + strand, within PGA1_c04200at 408.256 kb on + strand, within PGA1_c04200at 408.280 kb on + strand, within PGA1_c04200at 408.304 kb on + strand, within PGA1_c04200at 408.379 kb on - strand, within PGA1_c04200at 408.395 kb on + strand, within PGA1_c04200at 408.486 kb on - strandat 408.539 kb on + strandat 408.541 kb on + strandat 408.541 kb on + strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.549 kb on - strandat 408.611 kb on - strandat 408.793 kb on - strand, within PGA1_c04210at 408.897 kb on + strand, within PGA1_c04210at 408.945 kb on + strand, within PGA1_c04210at 409.062 kb on + strand, within PGA1_c04210at 409.127 kb on - strand, within PGA1_c04210at 409.127 kb on - strand, within PGA1_c04210at 409.132 kb on - strand, within PGA1_c04210at 409.137 kb on - strand, within PGA1_c04210at 409.153 kb on - strand, within PGA1_c04210at 409.215 kb on + strand, within PGA1_c04210at 409.228 kb on - strand, within PGA1_c04210at 409.231 kb on + strand, within PGA1_c04210at 409.244 kb on - strand, within PGA1_c04210at 409.296 kb on + strand, within PGA1_c04210at 409.316 kb on + strand, within PGA1_c04210at 409.354 kb on + strand, within PGA1_c04210at 409.377 kb on - strand, within PGA1_c04210at 409.396 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.422 kb on - strand, within PGA1_c04210at 409.441 kb on + strand, within PGA1_c04210at 409.494 kb on - strand, within PGA1_c04210at 409.570 kb on + strand, within PGA1_c04210at 409.573 kb on - strand, within PGA1_c04210at 409.578 kb on - strand, within PGA1_c04210at 409.588 kb on + strand, within PGA1_c04210at 409.594 kb on + strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.612 kb on + strand, within PGA1_c04210at 409.681 kb on - strand, within PGA1_c04210at 409.718 kb on + strand, within PGA1_c04210at 409.839 kb on - strandat 409.877 kb on - strandat 409.880 kb on + strandat 409.888 kb on - strandat 409.910 kb on + strandat 409.918 kb on - strandat 409.918 kb on - strandat 409.923 kb on - strandat 409.943 kb on + strandat 409.970 kb on + strandat 410.027 kb on - strand, within PGA1_c04220at 410.027 kb on - strand, within PGA1_c04220at 410.029 kb on + strand, within PGA1_c04220at 410.037 kb on - strand, within PGA1_c04220at 410.108 kb on + strand, within PGA1_c04220at 410.128 kb on - strand, within PGA1_c04220at 410.133 kb on - strand, within PGA1_c04220at 410.159 kb on + strand, within PGA1_c04220at 410.212 kb on + strand, within PGA1_c04220at 410.246 kb on + strand, within PGA1_c04220at 410.254 kb on - strand, within PGA1_c04220at 410.254 kb on - strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.308 kb on - strand, within PGA1_c04220at 410.317 kb on + strand, within PGA1_c04220at 410.323 kb on + strand, within PGA1_c04220at 410.329 kb on + strand, within PGA1_c04220at 410.385 kb on + strand, within PGA1_c04220at 410.419 kb on + strand, within PGA1_c04220at 410.483 kb on + strand, within PGA1_c04220at 410.491 kb on - strandat 410.496 kb on + strandat 410.518 kb on + strandat 410.549 kb on + strandat 410.557 kb on - strandat 410.559 kb on + strandat 410.572 kb on - strandat 410.631 kb on + strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.657 kb on + strandat 410.706 kb on + strand, within PGA1_c04230at 410.707 kb on - strand, within PGA1_c04230at 410.709 kb on - strand, within PGA1_c04230at 410.768 kb on + strand, within PGA1_c04230at 410.768 kb on - strand, within PGA1_c04230at 410.832 kb on - strand, within PGA1_c04230

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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407,517 + -1.3
407,520 + -1.4
407,528 - -0.9
407,537 + -0.2
407,569 - -0.9
407,571 + -0.9
407,571 + -0.2
407,571 + -0.2
407,571 + -0.2
407,571 + +0.4
407,571 + -0.2
407,571 + -0.1
407,579 - +0.6
407,579 - -0.9
407,579 - -0.3
407,579 - -0.3
407,579 - -0.6
407,579 - -1.7
407,579 - +0.5
407,579 - +0.3
407,579 - -0.0
407,579 - -0.8
407,582 - +0.7
407,665 + -0.4
407,737 - PGA1_c04200 0.10 -0.4
407,806 + PGA1_c04200 0.18 -0.3
407,859 + PGA1_c04200 0.24 -1.9
407,885 - PGA1_c04200 0.27 -0.8
407,902 + PGA1_c04200 0.29 +0.1
407,902 + PGA1_c04200 0.29 -1.8
407,907 + PGA1_c04200 0.30 -0.9
407,980 + PGA1_c04200 0.38 -0.4
407,980 + PGA1_c04200 0.38 +0.2
408,012 - PGA1_c04200 0.42 -1.3
408,124 - PGA1_c04200 0.54 -0.2
408,165 + PGA1_c04200 0.59 -0.1
408,225 - PGA1_c04200 0.66 +0.5
408,255 + PGA1_c04200 0.70 -0.5
408,256 + PGA1_c04200 0.70 -1.1
408,280 + PGA1_c04200 0.72 -1.1
408,304 + PGA1_c04200 0.75 -0.1
408,379 - PGA1_c04200 0.84 -0.1
408,395 + PGA1_c04200 0.86 +0.9
408,486 - +0.9
408,539 + +1.1
408,541 + -0.0
408,541 + -0.1
408,549 - -1.0
408,549 - +0.4
408,549 - +0.4
408,549 - +0.0
408,549 - +0.5
408,549 - -0.2
408,611 - +0.6
408,793 - PGA1_c04210 0.20 +0.0
408,897 + PGA1_c04210 0.28 -0.8
408,945 + PGA1_c04210 0.31 -0.5
409,062 + PGA1_c04210 0.40 -0.9
409,127 - PGA1_c04210 0.45 +0.7
409,127 - PGA1_c04210 0.45 -0.2
409,132 - PGA1_c04210 0.45 -0.2
409,137 - PGA1_c04210 0.45 -0.3
409,153 - PGA1_c04210 0.46 -0.3
409,215 + PGA1_c04210 0.51 +0.1
409,228 - PGA1_c04210 0.52 -0.7
409,231 + PGA1_c04210 0.52 +0.7
409,244 - PGA1_c04210 0.53 +0.2
409,296 + PGA1_c04210 0.57 -0.1
409,316 + PGA1_c04210 0.58 -0.9
409,354 + PGA1_c04210 0.61 +0.0
409,377 - PGA1_c04210 0.63 -0.6
409,396 - PGA1_c04210 0.64 -0.4
409,417 - PGA1_c04210 0.66 -0.6
409,417 - PGA1_c04210 0.66 -1.5
409,417 - PGA1_c04210 0.66 -0.6
409,422 - PGA1_c04210 0.66 +0.2
409,441 + PGA1_c04210 0.67 -0.2
409,494 - PGA1_c04210 0.71 -1.6
409,570 + PGA1_c04210 0.77 -2.4
409,573 - PGA1_c04210 0.77 -0.7
409,578 - PGA1_c04210 0.77 +1.1
409,588 + PGA1_c04210 0.78 -0.6
409,594 + PGA1_c04210 0.79 +1.4
409,596 - PGA1_c04210 0.79 -0.3
409,596 - PGA1_c04210 0.79 -1.9
409,596 - PGA1_c04210 0.79 -0.3
409,612 + PGA1_c04210 0.80 -0.5
409,681 - PGA1_c04210 0.85 -0.3
409,718 + PGA1_c04210 0.88 -1.2
409,839 - +1.1
409,877 - +0.2
409,880 + -0.3
409,888 - +0.2
409,910 + -0.3
409,918 - +0.8
409,918 - -0.5
409,923 - +0.9
409,943 + +0.6
409,970 + -1.7
410,027 - PGA1_c04220 0.15 -1.3
410,027 - PGA1_c04220 0.15 +0.4
410,029 + PGA1_c04220 0.15 +0.3
410,037 - PGA1_c04220 0.17 -0.9
410,108 + PGA1_c04220 0.28 +1.0
410,128 - PGA1_c04220 0.31 -1.0
410,133 - PGA1_c04220 0.32 -0.3
410,159 + PGA1_c04220 0.36 +0.2
410,212 + PGA1_c04220 0.45 +1.3
410,246 + PGA1_c04220 0.51 -0.8
410,254 - PGA1_c04220 0.52 +1.2
410,254 - PGA1_c04220 0.52 +0.8
410,305 + PGA1_c04220 0.60 +0.1
410,305 + PGA1_c04220 0.60 -0.2
410,305 + PGA1_c04220 0.60 -0.4
410,308 - PGA1_c04220 0.61 -1.3
410,317 + PGA1_c04220 0.62 +0.0
410,323 + PGA1_c04220 0.63 -1.7
410,329 + PGA1_c04220 0.64 +0.4
410,385 + PGA1_c04220 0.73 +0.4
410,419 + PGA1_c04220 0.79 -0.8
410,483 + PGA1_c04220 0.89 +1.4
410,491 - +0.3
410,496 + +0.0
410,518 + -0.8
410,549 + +0.4
410,557 - -0.6
410,559 + +0.9
410,572 - +0.8
410,631 + -0.9
410,639 - +0.8
410,639 - -1.4
410,639 - +0.9
410,657 + -0.6
410,706 + PGA1_c04230 0.15 +0.2
410,707 - PGA1_c04230 0.16 +0.6
410,709 - PGA1_c04230 0.16 -0.5
410,768 + PGA1_c04230 0.24 +0.3
410,768 - PGA1_c04230 0.24 -0.2
410,832 - PGA1_c04230 0.33 -0.8

Or see this region's nucleotide sequence