Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4000 and HP15_4001 are separated by 119 nucleotides HP15_4001 and HP15_4002 are separated by 153 nucleotides HP15_4002 and HP15_4003 are separated by 55 nucleotides
HP15_4000: HP15_4000 - GGDEF domain membrane protein, at 4,232,941 to 4,233,996
_4000
HP15_4001: HP15_4001 - ion transport 2 domain protein, at 4,234,116 to 4,234,565
_4001
HP15_4002: HP15_4002 - efflux transporter, RND family, MFP subunit, at 4,234,719 to 4,235,957
_4002
HP15_4003: HP15_4003 - transporter, AcrB/AcrD/AcrF family protein, at 4,236,013 to 4,239,114
_4003
Position (kb)
4234
4235
4236 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4233.934 kb on + strand at 4234.017 kb on - strand at 4234.287 kb on + strand, within HP15_4001 at 4234.287 kb on + strand, within HP15_4001 at 4234.297 kb on - strand, within HP15_4001 at 4234.368 kb on + strand, within HP15_4001 at 4234.574 kb on - strand at 4234.622 kb on + strand at 4234.630 kb on - strand at 4234.666 kb on - strand at 4234.811 kb on - strand at 4234.834 kb on - strand at 4235.033 kb on + strand, within HP15_4002 at 4235.067 kb on + strand, within HP15_4002 at 4235.085 kb on - strand, within HP15_4002 at 4235.115 kb on - strand, within HP15_4002 at 4235.205 kb on + strand, within HP15_4002 at 4235.236 kb on + strand, within HP15_4002 at 4235.262 kb on - strand, within HP15_4002 at 4235.277 kb on - strand, within HP15_4002 at 4235.326 kb on + strand, within HP15_4002 at 4235.326 kb on + strand, within HP15_4002 at 4235.453 kb on + strand, within HP15_4002 at 4235.470 kb on + strand, within HP15_4002 at 4235.478 kb on - strand, within HP15_4002 at 4235.568 kb on - strand, within HP15_4002 at 4235.705 kb on + strand, within HP15_4002 at 4235.713 kb on - strand, within HP15_4002 at 4235.735 kb on + strand, within HP15_4002 at 4235.847 kb on - strand at 4235.887 kb on + strand at 4235.887 kb on + strand at 4235.887 kb on + strand at 4235.900 kb on - strand at 4235.922 kb on - strand at 4236.002 kb on + strand at 4236.073 kb on + strand at 4236.088 kb on - strand at 4236.088 kb on - strand at 4236.112 kb on + strand at 4236.119 kb on - strand at 4236.142 kb on + strand at 4236.156 kb on - strand at 4236.160 kb on - strand at 4236.161 kb on + strand at 4236.169 kb on - strand at 4236.169 kb on - strand at 4236.216 kb on + strand at 4236.225 kb on - strand at 4236.315 kb on + strand at 4236.326 kb on + strand, within HP15_4003 at 4236.334 kb on - strand, within HP15_4003 at 4236.335 kb on + strand, within HP15_4003 at 4236.335 kb on + strand, within HP15_4003 at 4236.344 kb on - strand, within HP15_4003 at 4236.646 kb on - strand, within HP15_4003 at 4236.664 kb on - strand, within HP15_4003 at 4236.684 kb on + strand, within HP15_4003 at 4236.900 kb on + strand, within HP15_4003 at 4236.912 kb on + strand, within HP15_4003
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 4,233,934 + -1.4 4,234,017 - -2.0 4,234,287 + HP15_4001 0.38 -0.5 4,234,287 + HP15_4001 0.38 -1.9 4,234,297 - HP15_4001 0.40 +0.5 4,234,368 + HP15_4001 0.56 -0.9 4,234,574 - +0.3 4,234,622 + +0.5 4,234,630 - +2.1 4,234,666 - -2.6 4,234,811 - -1.0 4,234,834 - +0.9 4,235,033 + HP15_4002 0.25 +1.7 4,235,067 + HP15_4002 0.28 +1.4 4,235,085 - HP15_4002 0.30 +1.5 4,235,115 - HP15_4002 0.32 +1.1 4,235,205 + HP15_4002 0.39 -1.9 4,235,236 + HP15_4002 0.42 -1.7 4,235,262 - HP15_4002 0.44 +0.8 4,235,277 - HP15_4002 0.45 +1.2 4,235,326 + HP15_4002 0.49 -0.6 4,235,326 + HP15_4002 0.49 +0.9 4,235,453 + HP15_4002 0.59 -0.3 4,235,470 + HP15_4002 0.61 +0.7 4,235,478 - HP15_4002 0.61 +1.0 4,235,568 - HP15_4002 0.69 -1.1 4,235,705 + HP15_4002 0.80 +0.9 4,235,713 - HP15_4002 0.80 +0.5 4,235,735 + HP15_4002 0.82 +0.9 4,235,847 - -0.7 4,235,887 + +1.4 4,235,887 + +1.2 4,235,887 + +0.2 4,235,900 - +0.9 4,235,922 - +1.1 4,236,002 + -0.9 4,236,073 + +0.5 4,236,088 - +0.9 4,236,088 - +0.8 4,236,112 + +0.1 4,236,119 - +2.4 4,236,142 + +0.4 4,236,156 - +0.6 4,236,160 - +0.6 4,236,161 + -0.0 4,236,169 - +0.9 4,236,169 - +0.1 4,236,216 + +0.5 4,236,225 - +0.9 4,236,315 + +1.3 4,236,326 + HP15_4003 0.10 +1.1 4,236,334 - HP15_4003 0.10 +1.0 4,236,335 + HP15_4003 0.10 -1.0 4,236,335 + HP15_4003 0.10 +0.3 4,236,344 - HP15_4003 0.11 +0.8 4,236,646 - HP15_4003 0.20 +1.2 4,236,664 - HP15_4003 0.21 +1.4 4,236,684 + HP15_4003 0.22 +2.3 4,236,900 + HP15_4003 0.29 +0.8 4,236,912 + HP15_4003 0.29 +1.2
Or see this region's nucleotide sequence