Strain Fitness in Marinobacter adhaerens HP15 around HP15_3946

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3945 and HP15_3946 are separated by 149 nucleotidesHP15_3946 and HP15_3947 are separated by 160 nucleotidesHP15_3947 and HP15_3948 are separated by 2 nucleotides HP15_3945: HP15_3945 - aldehyde dehydrogenase family protein, at 4,174,686 to 4,176,101 _3945 HP15_3946: HP15_3946 - transcriptional regulator, at 4,176,251 to 4,176,832 _3946 HP15_3947: HP15_3947 - two-component response regulator, at 4,176,993 to 4,177,694 _3947 HP15_3948: HP15_3948 - periplasmic sensor signal transduction histidine kinase, at 4,177,697 to 4,179,196 _3948 Position (kb) 4176 4177Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4175.255 kb on + strand, within HP15_3945at 4175.255 kb on + strand, within HP15_3945at 4175.255 kb on + strand, within HP15_3945at 4175.255 kb on + strand, within HP15_3945at 4175.263 kb on - strand, within HP15_3945at 4175.263 kb on - strand, within HP15_3945at 4175.263 kb on - strand, within HP15_3945at 4175.263 kb on - strand, within HP15_3945at 4175.310 kb on - strand, within HP15_3945at 4175.310 kb on - strand, within HP15_3945at 4175.310 kb on - strand, within HP15_3945at 4175.410 kb on + strand, within HP15_3945at 4175.411 kb on - strand, within HP15_3945at 4175.436 kb on + strand, within HP15_3945at 4175.444 kb on + strand, within HP15_3945at 4175.457 kb on + strand, within HP15_3945at 4175.470 kb on - strand, within HP15_3945at 4175.478 kb on - strand, within HP15_3945at 4175.513 kb on + strand, within HP15_3945at 4175.516 kb on - strand, within HP15_3945at 4175.521 kb on - strand, within HP15_3945at 4175.645 kb on + strand, within HP15_3945at 4175.645 kb on + strand, within HP15_3945at 4175.650 kb on + strand, within HP15_3945at 4175.702 kb on - strand, within HP15_3945at 4175.837 kb on + strand, within HP15_3945at 4175.903 kb on + strand, within HP15_3945at 4175.925 kb on - strand, within HP15_3945at 4175.962 kb on + strandat 4175.967 kb on + strandat 4175.975 kb on - strandat 4176.001 kb on + strandat 4176.088 kb on + strandat 4176.088 kb on + strandat 4176.120 kb on + strandat 4176.217 kb on + strandat 4176.316 kb on + strand, within HP15_3946at 4176.353 kb on - strand, within HP15_3946at 4176.380 kb on - strand, within HP15_3946at 4176.417 kb on + strand, within HP15_3946at 4176.449 kb on + strand, within HP15_3946at 4176.457 kb on - strand, within HP15_3946at 4176.467 kb on - strand, within HP15_3946at 4176.541 kb on + strand, within HP15_3946at 4176.546 kb on + strand, within HP15_3946at 4176.588 kb on + strand, within HP15_3946at 4176.657 kb on - strand, within HP15_3946at 4176.717 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.759 kb on + strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.767 kb on - strand, within HP15_3946at 4176.802 kb on + strandat 4176.810 kb on - strandat 4176.905 kb on - strandat 4176.983 kb on + strandat 4176.983 kb on + strandat 4176.991 kb on - strandat 4177.051 kb on - strandat 4177.055 kb on + strandat 4177.084 kb on - strand, within HP15_3947at 4177.187 kb on - strand, within HP15_3947at 4177.331 kb on + strand, within HP15_3947at 4177.359 kb on - strand, within HP15_3947at 4177.364 kb on + strand, within HP15_3947at 4177.408 kb on - strand, within HP15_3947at 4177.552 kb on - strand, within HP15_3947at 4177.569 kb on - strand, within HP15_3947at 4177.582 kb on + strand, within HP15_3947at 4177.603 kb on + strand, within HP15_3947at 4177.609 kb on - strand, within HP15_3947at 4177.661 kb on + strandat 4177.670 kb on - strandat 4177.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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4,175,255 + HP15_3945 0.40 -0.3
4,175,255 + HP15_3945 0.40 +0.5
4,175,255 + HP15_3945 0.40 +0.5
4,175,255 + HP15_3945 0.40 -0.5
4,175,263 - HP15_3945 0.41 +0.9
4,175,263 - HP15_3945 0.41 -4.3
4,175,263 - HP15_3945 0.41 -2.3
4,175,263 - HP15_3945 0.41 -0.5
4,175,310 - HP15_3945 0.44 -0.3
4,175,310 - HP15_3945 0.44 -1.1
4,175,310 - HP15_3945 0.44 +0.0
4,175,410 + HP15_3945 0.51 +0.3
4,175,411 - HP15_3945 0.51 -1.3
4,175,436 + HP15_3945 0.53 +0.5
4,175,444 + HP15_3945 0.54 +0.2
4,175,457 + HP15_3945 0.54 -0.4
4,175,470 - HP15_3945 0.55 +0.4
4,175,478 - HP15_3945 0.56 -1.6
4,175,513 + HP15_3945 0.58 +1.2
4,175,516 - HP15_3945 0.59 -0.6
4,175,521 - HP15_3945 0.59 -1.2
4,175,645 + HP15_3945 0.68 +1.0
4,175,645 + HP15_3945 0.68 +0.5
4,175,650 + HP15_3945 0.68 -1.7
4,175,702 - HP15_3945 0.72 -0.1
4,175,837 + HP15_3945 0.81 -1.0
4,175,903 + HP15_3945 0.86 -3.0
4,175,925 - HP15_3945 0.88 +0.2
4,175,962 + +1.1
4,175,967 + +0.2
4,175,975 - +1.2
4,176,001 + +0.2
4,176,088 + -0.1
4,176,088 + -2.2
4,176,120 + +0.7
4,176,217 + +0.5
4,176,316 + HP15_3946 0.11 +2.6
4,176,353 - HP15_3946 0.18 +0.8
4,176,380 - HP15_3946 0.22 +0.8
4,176,417 + HP15_3946 0.29 +1.2
4,176,449 + HP15_3946 0.34 +0.8
4,176,457 - HP15_3946 0.35 +0.3
4,176,467 - HP15_3946 0.37 -2.5
4,176,541 + HP15_3946 0.50 +1.2
4,176,546 + HP15_3946 0.51 -0.5
4,176,588 + HP15_3946 0.58 +0.8
4,176,657 - HP15_3946 0.70 +0.6
4,176,717 + HP15_3946 0.80 +0.6
4,176,759 + HP15_3946 0.87 +0.9
4,176,759 + HP15_3946 0.87 +2.6
4,176,759 + HP15_3946 0.87 +1.0
4,176,759 + HP15_3946 0.87 -1.4
4,176,759 + HP15_3946 0.87 +1.8
4,176,767 - HP15_3946 0.89 -0.8
4,176,767 - HP15_3946 0.89 -0.5
4,176,767 - HP15_3946 0.89 +1.0
4,176,767 - HP15_3946 0.89 -1.9
4,176,802 + +1.4
4,176,810 - -1.6
4,176,905 - +0.3
4,176,983 + -1.7
4,176,983 + -0.3
4,176,991 - -0.6
4,177,051 - +0.1
4,177,055 + -2.7
4,177,084 - HP15_3947 0.13 -0.6
4,177,187 - HP15_3947 0.28 +0.2
4,177,331 + HP15_3947 0.48 +0.1
4,177,359 - HP15_3947 0.52 -1.6
4,177,364 + HP15_3947 0.53 -0.1
4,177,408 - HP15_3947 0.59 -1.8
4,177,552 - HP15_3947 0.80 -0.8
4,177,569 - HP15_3947 0.82 +2.1
4,177,582 + HP15_3947 0.84 -0.5
4,177,603 + HP15_3947 0.87 +0.3
4,177,609 - HP15_3947 0.88 -0.7
4,177,661 + +0.1
4,177,670 - -1.3
4,177,697 - +0.6

Or see this region's nucleotide sequence