Strain Fitness in Marinobacter adhaerens HP15 around HP15_3610

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3608 and HP15_3609 are separated by 40 nucleotidesHP15_3609 and HP15_3610 are separated by 69 nucleotidesHP15_3610 and HP15_3611 are separated by 290 nucleotides HP15_3608: HP15_3608 - membrane protein containing redoxin domain, at 3,804,441 to 3,805,256 _3608 HP15_3609: HP15_3609 - secreted protein containing DUF302, at 3,805,297 to 3,805,752 _3609 HP15_3610: HP15_3610 - lipid A biosynthesis lauroyl acyltransferase, at 3,805,822 to 3,806,640 _3610 HP15_3611: HP15_3611 - transglycosylase, Slt family protein, at 3,806,931 to 3,808,301 _3611 Position (kb) 3805 3806 3807Strain fitness (log2 ratio) -2 -1 0 1at 3804.822 kb on - strand, within HP15_3608at 3804.822 kb on - strand, within HP15_3608at 3804.822 kb on - strand, within HP15_3608at 3804.822 kb on - strand, within HP15_3608at 3804.822 kb on - strand, within HP15_3608at 3804.822 kb on - strand, within HP15_3608at 3804.869 kb on + strand, within HP15_3608at 3804.874 kb on + strand, within HP15_3608at 3804.882 kb on + strand, within HP15_3608at 3804.929 kb on + strand, within HP15_3608at 3804.959 kb on - strand, within HP15_3608at 3804.992 kb on - strand, within HP15_3608at 3805.026 kb on - strand, within HP15_3608at 3805.045 kb on - strand, within HP15_3608at 3805.172 kb on - strand, within HP15_3608at 3805.202 kb on + strandat 3805.217 kb on + strandat 3805.220 kb on - strandat 3805.253 kb on - strandat 3805.261 kb on + strandat 3805.363 kb on + strand, within HP15_3609at 3805.420 kb on - strand, within HP15_3609at 3805.461 kb on + strand, within HP15_3609at 3805.469 kb on - strand, within HP15_3609at 3805.505 kb on + strand, within HP15_3609at 3805.645 kb on - strand, within HP15_3609at 3805.713 kb on - strandat 3805.785 kb on + strandat 3805.790 kb on + strandat 3805.790 kb on + strandat 3805.818 kb on - strandat 3805.825 kb on + strandat 3805.833 kb on - strandat 3805.833 kb on - strandat 3806.067 kb on + strand, within HP15_3610at 3806.149 kb on + strand, within HP15_3610at 3806.152 kb on - strand, within HP15_3610at 3806.188 kb on + strand, within HP15_3610at 3806.191 kb on - strand, within HP15_3610at 3806.196 kb on - strand, within HP15_3610at 3806.387 kb on + strand, within HP15_3610at 3806.402 kb on + strand, within HP15_3610at 3806.403 kb on - strand, within HP15_3610at 3806.404 kb on + strand, within HP15_3610at 3806.405 kb on - strand, within HP15_3610at 3806.460 kb on - strand, within HP15_3610at 3806.545 kb on + strand, within HP15_3610at 3806.636 kb on - strandat 3806.894 kb on - strandat 3807.037 kb on - strandat 3807.129 kb on - strand, within HP15_3611at 3807.145 kb on - strand, within HP15_3611at 3807.242 kb on - strand, within HP15_3611at 3807.299 kb on - strand, within HP15_3611at 3807.360 kb on + strand, within HP15_3611at 3807.475 kb on + strand, within HP15_3611at 3807.518 kb on + strand, within HP15_3611at 3807.592 kb on + strand, within HP15_3611at 3807.592 kb on + strand, within HP15_3611at 3807.592 kb on + strand, within HP15_3611at 3807.600 kb on - strand, within HP15_3611at 3807.600 kb on - strand, within HP15_3611

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,804,822 - HP15_3608 0.47 +0.4
3,804,822 - HP15_3608 0.47 +0.1
3,804,822 - HP15_3608 0.47 -0.2
3,804,822 - HP15_3608 0.47 -2.3
3,804,822 - HP15_3608 0.47 +1.1
3,804,822 - HP15_3608 0.47 -0.4
3,804,869 + HP15_3608 0.52 +0.3
3,804,874 + HP15_3608 0.53 -0.5
3,804,882 + HP15_3608 0.54 +0.7
3,804,929 + HP15_3608 0.60 +0.2
3,804,959 - HP15_3608 0.63 +0.8
3,804,992 - HP15_3608 0.68 -0.6
3,805,026 - HP15_3608 0.72 -1.2
3,805,045 - HP15_3608 0.74 -0.7
3,805,172 - HP15_3608 0.90 +0.6
3,805,202 + +0.1
3,805,217 + -0.6
3,805,220 - -2.0
3,805,253 - -2.2
3,805,261 + +0.5
3,805,363 + HP15_3609 0.14 -0.1
3,805,420 - HP15_3609 0.27 -0.1
3,805,461 + HP15_3609 0.36 -2.3
3,805,469 - HP15_3609 0.38 -1.9
3,805,505 + HP15_3609 0.46 +0.1
3,805,645 - HP15_3609 0.76 -2.0
3,805,713 - -0.2
3,805,785 + -1.3
3,805,790 + +1.0
3,805,790 + -1.3
3,805,818 - +0.1
3,805,825 + +0.3
3,805,833 - +1.5
3,805,833 - -1.6
3,806,067 + HP15_3610 0.30 +0.7
3,806,149 + HP15_3610 0.40 +0.7
3,806,152 - HP15_3610 0.40 +0.2
3,806,188 + HP15_3610 0.45 -0.9
3,806,191 - HP15_3610 0.45 -0.0
3,806,196 - HP15_3610 0.46 +0.5
3,806,387 + HP15_3610 0.69 -2.4
3,806,402 + HP15_3610 0.71 +0.4
3,806,403 - HP15_3610 0.71 -0.7
3,806,404 + HP15_3610 0.71 +1.6
3,806,405 - HP15_3610 0.71 +0.2
3,806,460 - HP15_3610 0.78 -0.9
3,806,545 + HP15_3610 0.88 +0.9
3,806,636 - -0.8
3,806,894 - +0.5
3,807,037 - +0.8
3,807,129 - HP15_3611 0.14 +1.0
3,807,145 - HP15_3611 0.16 +0.3
3,807,242 - HP15_3611 0.23 +0.0
3,807,299 - HP15_3611 0.27 -1.0
3,807,360 + HP15_3611 0.31 +1.7
3,807,475 + HP15_3611 0.40 +0.2
3,807,518 + HP15_3611 0.43 -0.3
3,807,592 + HP15_3611 0.48 -0.1
3,807,592 + HP15_3611 0.48 -0.4
3,807,592 + HP15_3611 0.48 +0.7
3,807,600 - HP15_3611 0.49 +0.0
3,807,600 - HP15_3611 0.49 -2.2

Or see this region's nucleotide sequence