Strain Fitness in Marinobacter adhaerens HP15 around HP15_3550

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3549 and HP15_3550 are separated by 46 nucleotidesHP15_3550 and HP15_3551 are separated by 41 nucleotidesHP15_3551 and HP15_3552 are separated by 84 nucleotides HP15_3549: HP15_3549 - diguanylate cyclase, at 3,738,121 to 3,739,842 _3549 HP15_3550: HP15_3550 - conserved hypothetical protein, at 3,739,889 to 3,740,920 _3550 HP15_3551: HP15_3551 - putative hydroxylase, at 3,740,962 to 3,741,636 _3551 HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706 _3552 Position (kb) 3739 3740 3741Strain fitness (log2 ratio) -3 -2 -1 0 1at 3738.924 kb on - strand, within HP15_3549at 3738.966 kb on - strand, within HP15_3549at 3738.985 kb on - strand, within HP15_3549at 3739.004 kb on + strand, within HP15_3549at 3739.042 kb on + strand, within HP15_3549at 3739.071 kb on - strand, within HP15_3549at 3739.182 kb on + strand, within HP15_3549at 3739.197 kb on + strand, within HP15_3549at 3739.283 kb on - strand, within HP15_3549at 3739.435 kb on - strand, within HP15_3549at 3739.448 kb on + strand, within HP15_3549at 3739.526 kb on + strand, within HP15_3549at 3739.530 kb on - strand, within HP15_3549at 3739.534 kb on - strand, within HP15_3549at 3739.557 kb on + strand, within HP15_3549at 3739.797 kb on - strandat 3739.802 kb on - strandat 3739.918 kb on - strandat 3739.918 kb on - strandat 3740.011 kb on + strand, within HP15_3550at 3740.037 kb on + strand, within HP15_3550at 3740.045 kb on - strand, within HP15_3550at 3740.094 kb on + strand, within HP15_3550at 3740.095 kb on + strand, within HP15_3550at 3740.136 kb on - strand, within HP15_3550at 3740.177 kb on - strand, within HP15_3550at 3740.184 kb on + strand, within HP15_3550at 3740.252 kb on - strand, within HP15_3550at 3740.252 kb on - strand, within HP15_3550at 3740.285 kb on - strand, within HP15_3550at 3740.339 kb on + strand, within HP15_3550at 3740.384 kb on + strand, within HP15_3550at 3740.404 kb on + strand, within HP15_3550at 3740.412 kb on - strand, within HP15_3550at 3740.412 kb on - strand, within HP15_3550at 3740.420 kb on + strand, within HP15_3550at 3740.423 kb on - strand, within HP15_3550at 3740.494 kb on - strand, within HP15_3550at 3740.636 kb on + strand, within HP15_3550at 3740.651 kb on - strand, within HP15_3550at 3740.670 kb on - strand, within HP15_3550at 3740.704 kb on + strand, within HP15_3550at 3740.723 kb on + strand, within HP15_3550at 3740.796 kb on + strand, within HP15_3550at 3740.897 kb on - strandat 3740.898 kb on - strandat 3740.898 kb on - strandat 3740.900 kb on - strandat 3740.948 kb on + strandat 3740.998 kb on - strandat 3741.027 kb on - strandat 3741.056 kb on + strand, within HP15_3551at 3741.058 kb on + strand, within HP15_3551at 3741.058 kb on + strand, within HP15_3551at 3741.066 kb on - strand, within HP15_3551at 3741.066 kb on - strand, within HP15_3551at 3741.076 kb on - strand, within HP15_3551at 3741.102 kb on - strand, within HP15_3551at 3741.125 kb on - strand, within HP15_3551at 3741.146 kb on - strand, within HP15_3551at 3741.171 kb on - strand, within HP15_3551at 3741.179 kb on - strand, within HP15_3551at 3741.229 kb on + strand, within HP15_3551at 3741.229 kb on + strand, within HP15_3551at 3741.237 kb on - strand, within HP15_3551at 3741.320 kb on - strand, within HP15_3551at 3741.408 kb on + strand, within HP15_3551at 3741.416 kb on - strand, within HP15_3551at 3741.427 kb on - strand, within HP15_3551at 3741.432 kb on - strand, within HP15_3551at 3741.437 kb on - strand, within HP15_3551at 3741.442 kb on - strand, within HP15_3551at 3741.534 kb on - strand, within HP15_3551at 3741.536 kb on - strand, within HP15_3551at 3741.617 kb on - strandat 3741.673 kb on + strandat 3741.673 kb on + strandat 3741.681 kb on - strandat 3741.886 kb on + strandat 3741.894 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,738,924 - HP15_3549 0.47 -0.2
3,738,966 - HP15_3549 0.49 -0.2
3,738,985 - HP15_3549 0.50 -1.7
3,739,004 + HP15_3549 0.51 +0.3
3,739,042 + HP15_3549 0.53 -1.4
3,739,071 - HP15_3549 0.55 +0.3
3,739,182 + HP15_3549 0.62 -1.6
3,739,197 + HP15_3549 0.62 -0.4
3,739,283 - HP15_3549 0.67 -0.2
3,739,435 - HP15_3549 0.76 +0.8
3,739,448 + HP15_3549 0.77 -1.0
3,739,526 + HP15_3549 0.82 -1.7
3,739,530 - HP15_3549 0.82 +0.8
3,739,534 - HP15_3549 0.82 -1.0
3,739,557 + HP15_3549 0.83 -1.3
3,739,797 - -1.0
3,739,802 - +1.0
3,739,918 - -0.3
3,739,918 - -0.6
3,740,011 + HP15_3550 0.12 -0.5
3,740,037 + HP15_3550 0.14 -0.3
3,740,045 - HP15_3550 0.15 -0.5
3,740,094 + HP15_3550 0.20 -1.3
3,740,095 + HP15_3550 0.20 -2.4
3,740,136 - HP15_3550 0.24 -0.7
3,740,177 - HP15_3550 0.28 +0.1
3,740,184 + HP15_3550 0.29 -0.6
3,740,252 - HP15_3550 0.35 -2.4
3,740,252 - HP15_3550 0.35 +0.6
3,740,285 - HP15_3550 0.38 -2.5
3,740,339 + HP15_3550 0.44 -0.5
3,740,384 + HP15_3550 0.48 -0.2
3,740,404 + HP15_3550 0.50 -0.2
3,740,412 - HP15_3550 0.51 -1.0
3,740,412 - HP15_3550 0.51 -2.1
3,740,420 + HP15_3550 0.51 -0.7
3,740,423 - HP15_3550 0.52 -0.4
3,740,494 - HP15_3550 0.59 -1.4
3,740,636 + HP15_3550 0.72 +0.1
3,740,651 - HP15_3550 0.74 -2.5
3,740,670 - HP15_3550 0.76 +0.5
3,740,704 + HP15_3550 0.79 -0.1
3,740,723 + HP15_3550 0.81 -0.1
3,740,796 + HP15_3550 0.88 -0.2
3,740,897 - +0.3
3,740,898 - -2.8
3,740,898 - +0.9
3,740,900 - -2.5
3,740,948 + +0.7
3,740,998 - -0.7
3,741,027 - -1.3
3,741,056 + HP15_3551 0.14 -0.6
3,741,058 + HP15_3551 0.14 -0.2
3,741,058 + HP15_3551 0.14 -2.4
3,741,066 - HP15_3551 0.15 -2.4
3,741,066 - HP15_3551 0.15 -0.8
3,741,076 - HP15_3551 0.17 -1.6
3,741,102 - HP15_3551 0.21 -3.0
3,741,125 - HP15_3551 0.24 -0.7
3,741,146 - HP15_3551 0.27 +0.2
3,741,171 - HP15_3551 0.31 -3.0
3,741,179 - HP15_3551 0.32 +0.2
3,741,229 + HP15_3551 0.40 +0.4
3,741,229 + HP15_3551 0.40 -0.7
3,741,237 - HP15_3551 0.41 -0.3
3,741,320 - HP15_3551 0.53 -2.3
3,741,408 + HP15_3551 0.66 -2.4
3,741,416 - HP15_3551 0.67 +0.1
3,741,427 - HP15_3551 0.69 -0.5
3,741,432 - HP15_3551 0.70 -1.0
3,741,437 - HP15_3551 0.70 -0.5
3,741,442 - HP15_3551 0.71 -0.4
3,741,534 - HP15_3551 0.85 -0.1
3,741,536 - HP15_3551 0.85 +0.3
3,741,617 - -1.6
3,741,673 + -3.5
3,741,673 + +1.3
3,741,681 - -1.3
3,741,886 + -2.9
3,741,894 - -3.1

Or see this region's nucleotide sequence