Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3549 and HP15_3550 are separated by 46 nucleotides HP15_3550 and HP15_3551 are separated by 41 nucleotides HP15_3551 and HP15_3552 are separated by 84 nucleotides
HP15_3549: HP15_3549 - diguanylate cyclase, at 3,738,121 to 3,739,842
_3549
HP15_3550: HP15_3550 - conserved hypothetical protein, at 3,739,889 to 3,740,920
_3550
HP15_3551: HP15_3551 - putative hydroxylase, at 3,740,962 to 3,741,636
_3551
HP15_3552: HP15_3552 - exoribonuclease R, at 3,741,721 to 3,743,706
_3552
Position (kb)
3739
3740
3741 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3738.924 kb on - strand, within HP15_3549 at 3738.966 kb on - strand, within HP15_3549 at 3738.985 kb on - strand, within HP15_3549 at 3739.004 kb on + strand, within HP15_3549 at 3739.042 kb on + strand, within HP15_3549 at 3739.071 kb on - strand, within HP15_3549 at 3739.182 kb on + strand, within HP15_3549 at 3739.197 kb on + strand, within HP15_3549 at 3739.283 kb on - strand, within HP15_3549 at 3739.435 kb on - strand, within HP15_3549 at 3739.448 kb on + strand, within HP15_3549 at 3739.526 kb on + strand, within HP15_3549 at 3739.530 kb on - strand, within HP15_3549 at 3739.534 kb on - strand, within HP15_3549 at 3739.557 kb on + strand, within HP15_3549 at 3739.797 kb on - strand at 3739.802 kb on - strand at 3739.918 kb on - strand at 3739.918 kb on - strand at 3740.011 kb on + strand, within HP15_3550 at 3740.037 kb on + strand, within HP15_3550 at 3740.045 kb on - strand, within HP15_3550 at 3740.094 kb on + strand, within HP15_3550 at 3740.095 kb on + strand, within HP15_3550 at 3740.136 kb on - strand, within HP15_3550 at 3740.177 kb on - strand, within HP15_3550 at 3740.184 kb on + strand, within HP15_3550 at 3740.252 kb on - strand, within HP15_3550 at 3740.252 kb on - strand, within HP15_3550 at 3740.285 kb on - strand, within HP15_3550 at 3740.339 kb on + strand, within HP15_3550 at 3740.384 kb on + strand, within HP15_3550 at 3740.404 kb on + strand, within HP15_3550 at 3740.412 kb on - strand, within HP15_3550 at 3740.412 kb on - strand, within HP15_3550 at 3740.420 kb on + strand, within HP15_3550 at 3740.423 kb on - strand, within HP15_3550 at 3740.494 kb on - strand, within HP15_3550 at 3740.636 kb on + strand, within HP15_3550 at 3740.651 kb on - strand, within HP15_3550 at 3740.670 kb on - strand, within HP15_3550 at 3740.704 kb on + strand, within HP15_3550 at 3740.723 kb on + strand, within HP15_3550 at 3740.796 kb on + strand, within HP15_3550 at 3740.897 kb on - strand at 3740.898 kb on - strand at 3740.898 kb on - strand at 3740.900 kb on - strand at 3740.948 kb on + strand at 3740.998 kb on - strand at 3741.027 kb on - strand at 3741.056 kb on + strand, within HP15_3551 at 3741.058 kb on + strand, within HP15_3551 at 3741.058 kb on + strand, within HP15_3551 at 3741.066 kb on - strand, within HP15_3551 at 3741.066 kb on - strand, within HP15_3551 at 3741.076 kb on - strand, within HP15_3551 at 3741.102 kb on - strand, within HP15_3551 at 3741.125 kb on - strand, within HP15_3551 at 3741.146 kb on - strand, within HP15_3551 at 3741.171 kb on - strand, within HP15_3551 at 3741.179 kb on - strand, within HP15_3551 at 3741.229 kb on + strand, within HP15_3551 at 3741.229 kb on + strand, within HP15_3551 at 3741.237 kb on - strand, within HP15_3551 at 3741.320 kb on - strand, within HP15_3551 at 3741.408 kb on + strand, within HP15_3551 at 3741.416 kb on - strand, within HP15_3551 at 3741.427 kb on - strand, within HP15_3551 at 3741.432 kb on - strand, within HP15_3551 at 3741.437 kb on - strand, within HP15_3551 at 3741.442 kb on - strand, within HP15_3551 at 3741.534 kb on - strand, within HP15_3551 at 3741.536 kb on - strand, within HP15_3551 at 3741.617 kb on - strand at 3741.673 kb on + strand at 3741.673 kb on + strand at 3741.681 kb on - strand at 3741.886 kb on + strand at 3741.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 3,738,924 - HP15_3549 0.47 -0.2 3,738,966 - HP15_3549 0.49 -0.2 3,738,985 - HP15_3549 0.50 -1.7 3,739,004 + HP15_3549 0.51 +0.3 3,739,042 + HP15_3549 0.53 -1.4 3,739,071 - HP15_3549 0.55 +0.3 3,739,182 + HP15_3549 0.62 -1.6 3,739,197 + HP15_3549 0.62 -0.4 3,739,283 - HP15_3549 0.67 -0.2 3,739,435 - HP15_3549 0.76 +0.8 3,739,448 + HP15_3549 0.77 -1.0 3,739,526 + HP15_3549 0.82 -1.7 3,739,530 - HP15_3549 0.82 +0.8 3,739,534 - HP15_3549 0.82 -1.0 3,739,557 + HP15_3549 0.83 -1.3 3,739,797 - -1.0 3,739,802 - +1.0 3,739,918 - -0.3 3,739,918 - -0.6 3,740,011 + HP15_3550 0.12 -0.5 3,740,037 + HP15_3550 0.14 -0.3 3,740,045 - HP15_3550 0.15 -0.5 3,740,094 + HP15_3550 0.20 -1.3 3,740,095 + HP15_3550 0.20 -2.4 3,740,136 - HP15_3550 0.24 -0.7 3,740,177 - HP15_3550 0.28 +0.1 3,740,184 + HP15_3550 0.29 -0.6 3,740,252 - HP15_3550 0.35 -2.4 3,740,252 - HP15_3550 0.35 +0.6 3,740,285 - HP15_3550 0.38 -2.5 3,740,339 + HP15_3550 0.44 -0.5 3,740,384 + HP15_3550 0.48 -0.2 3,740,404 + HP15_3550 0.50 -0.2 3,740,412 - HP15_3550 0.51 -1.0 3,740,412 - HP15_3550 0.51 -2.1 3,740,420 + HP15_3550 0.51 -0.7 3,740,423 - HP15_3550 0.52 -0.4 3,740,494 - HP15_3550 0.59 -1.4 3,740,636 + HP15_3550 0.72 +0.1 3,740,651 - HP15_3550 0.74 -2.5 3,740,670 - HP15_3550 0.76 +0.5 3,740,704 + HP15_3550 0.79 -0.1 3,740,723 + HP15_3550 0.81 -0.1 3,740,796 + HP15_3550 0.88 -0.2 3,740,897 - +0.3 3,740,898 - -2.8 3,740,898 - +0.9 3,740,900 - -2.5 3,740,948 + +0.7 3,740,998 - -0.7 3,741,027 - -1.3 3,741,056 + HP15_3551 0.14 -0.6 3,741,058 + HP15_3551 0.14 -0.2 3,741,058 + HP15_3551 0.14 -2.4 3,741,066 - HP15_3551 0.15 -2.4 3,741,066 - HP15_3551 0.15 -0.8 3,741,076 - HP15_3551 0.17 -1.6 3,741,102 - HP15_3551 0.21 -3.0 3,741,125 - HP15_3551 0.24 -0.7 3,741,146 - HP15_3551 0.27 +0.2 3,741,171 - HP15_3551 0.31 -3.0 3,741,179 - HP15_3551 0.32 +0.2 3,741,229 + HP15_3551 0.40 +0.4 3,741,229 + HP15_3551 0.40 -0.7 3,741,237 - HP15_3551 0.41 -0.3 3,741,320 - HP15_3551 0.53 -2.3 3,741,408 + HP15_3551 0.66 -2.4 3,741,416 - HP15_3551 0.67 +0.1 3,741,427 - HP15_3551 0.69 -0.5 3,741,432 - HP15_3551 0.70 -1.0 3,741,437 - HP15_3551 0.70 -0.5 3,741,442 - HP15_3551 0.71 -0.4 3,741,534 - HP15_3551 0.85 -0.1 3,741,536 - HP15_3551 0.85 +0.3 3,741,617 - -1.6 3,741,673 + -3.5 3,741,673 + +1.3 3,741,681 - -1.3 3,741,886 + -2.9 3,741,894 - -3.1
Or see this region's nucleotide sequence