Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35640

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
3,735,194	+		PGA1_c35610	0.84	-0.5
3,735,194	+		PGA1_c35610	0.84	-2.0
3,735,202	-		PGA1_c35610	0.85	-0.2
3,735,216	+		PGA1_c35610	0.87	-0.4
3,735,303	+				-0.6
3,735,344	+		PGA1_c35620	0.13	-0.9
3,735,352	-		PGA1_c35620	0.15	-0.2
3,735,352	-		PGA1_c35620	0.15	-1.4
3,735,354	+		PGA1_c35620	0.16	-0.5
3,735,395	-		PGA1_c35620	0.30	-1.1
3,735,411	+		PGA1_c35620	0.35	-0.1
3,735,421	-		PGA1_c35620	0.39	+0.2
3,735,479	+		PGA1_c35620	0.58	+0.4
3,735,486	-		PGA1_c35620	0.61	-0.1
3,735,488	-		PGA1_c35620	0.61	-0.4
3,735,510	-		PGA1_c35620	0.69	-0.9
3,735,511	-		PGA1_c35620	0.69	+0.2
3,735,612	+				+0.4
3,735,612	+				-0.1
3,735,629	+				-0.6
3,735,646	+				+0.4
3,735,654	-				+0.9
3,735,654	-				-0.2
3,735,666	+		PGA1_c35630	0.12	-0.0
3,735,666	+		PGA1_c35630	0.12	-0.3
3,735,674	-		PGA1_c35630	0.13	-0.5
3,735,674	-		PGA1_c35630	0.13	-0.2
3,735,710	-		PGA1_c35630	0.19	+0.2
3,735,710	-		PGA1_c35630	0.19	+0.0
3,735,717	+		PGA1_c35630	0.20	-0.5
3,735,720	-		PGA1_c35630	0.21	+0.3
3,735,720	-		PGA1_c35630	0.21	-0.5
3,735,725	-		PGA1_c35630	0.22	+1.0
3,735,725	-		PGA1_c35630	0.22	-1.2
3,735,727	-		PGA1_c35630	0.22	+0.8
3,735,789	+		PGA1_c35630	0.32	+0.7
3,735,797	+		PGA1_c35630	0.34	-0.5
3,735,805	-		PGA1_c35630	0.35	-0.6
3,735,842	+		PGA1_c35630	0.41	-0.6
3,735,842	+		PGA1_c35630	0.41	-0.9
3,735,914	+		PGA1_c35630	0.53	-0.9
3,735,917	-		PGA1_c35630	0.54	+0.0
3,735,917	-		PGA1_c35630	0.54	-1.0
3,735,917	-		PGA1_c35630	0.54	-1.3
3,735,919	+		PGA1_c35630	0.54	-0.5
3,735,919	+		PGA1_c35630	0.54	+0.2
3,735,919	+		PGA1_c35630	0.54	-0.1
3,735,919	+		PGA1_c35630	0.54	+0.0
3,735,922	-		PGA1_c35630	0.55	-0.8
3,735,927	-		PGA1_c35630	0.56	-0.1
3,735,927	-		PGA1_c35630	0.56	+0.1
3,736,001	-		PGA1_c35630	0.68	-1.6
3,736,011	+		PGA1_c35630	0.70	+0.6
3,736,011	+		PGA1_c35630	0.70	-0.4
3,736,011	+		PGA1_c35630	0.70	-0.5
3,736,019	-		PGA1_c35630	0.71	-0.1
3,736,019	-		PGA1_c35630	0.71	+0.1
3,736,019	-		PGA1_c35630	0.71	-0.2
3,736,019	-		PGA1_c35630	0.71	-0.1
3,736,019	-		PGA1_c35630	0.71	+0.0
3,736,019	-		PGA1_c35630	0.71	+0.2
3,736,019	-		PGA1_c35630	0.71	-0.4
3,736,019	-		PGA1_c35630	0.71	-0.9
3,736,019	-		PGA1_c35630	0.71	-0.8
3,736,031	-		PGA1_c35630	0.73	-0.6
3,736,035	+		PGA1_c35630	0.74	+0.3
3,736,041	-		PGA1_c35630	0.75	-1.1
3,736,041	-		PGA1_c35630	0.75	-1.9
3,736,056	+		PGA1_c35630	0.77	-0.1
3,736,060	+		PGA1_c35630	0.78	-0.6
3,736,060	+		PGA1_c35630	0.78	+0.1
3,736,060	+		PGA1_c35630	0.78	-0.9
3,736,068	-		PGA1_c35630	0.79	+0.0
3,736,072	+		PGA1_c35630	0.80	+0.5
3,736,139	+				-1.4
3,736,211	+				+0.6
3,736,233	-				-1.0
3,736,248	-				-0.5
3,736,293	-				-0.3
3,736,307	+				+0.4
3,736,316	-				+0.4
3,736,323	+				+0.2
3,736,328	-				+0.7
3,736,348	+				-1.0
3,736,349	-				-0.5
3,736,351	-				-0.4
3,736,355	+				-1.2
3,736,356	-				+0.2
3,736,387	+		PGA1_c35640	0.12	-1.2
3,736,387	+		PGA1_c35640	0.12	-0.3
3,736,387	+		PGA1_c35640	0.12	-0.1
3,736,387	+		PGA1_c35640	0.12	-0.1
3,736,388	-		PGA1_c35640	0.12	-0.4
3,736,395	-		PGA1_c35640	0.12	-0.3
3,736,402	+		PGA1_c35640	0.13	-1.2
3,736,428	-		PGA1_c35640	0.14	+0.5
3,736,429	+		PGA1_c35640	0.14	-0.2
3,736,577	+		PGA1_c35640	0.23	-1.2
3,736,580	-		PGA1_c35640	0.23	+0.5
3,736,601	-		PGA1_c35640	0.24	-0.2
3,736,630	+		PGA1_c35640	0.26	-0.5
3,736,789	-		PGA1_c35640	0.35	+0.8
3,736,814	+		PGA1_c35640	0.37	-0.3
3,736,839	+		PGA1_c35640	0.38	-1.5
3,736,839	+		PGA1_c35640	0.38	-1.3
3,736,842	-		PGA1_c35640	0.39	-0.5
3,736,925	+		PGA1_c35640	0.44	-0.5
3,736,925	-		PGA1_c35640	0.44	-0.4
3,736,925	-		PGA1_c35640	0.44	+0.1
3,736,925	-		PGA1_c35640	0.44	+0.2
3,736,933	-		PGA1_c35640	0.44	+0.7
3,736,933	-		PGA1_c35640	0.44	-0.1
3,736,957	-		PGA1_c35640	0.45	+1.0
3,736,997	-		PGA1_c35640	0.48	-1.5
3,737,048	+		PGA1_c35640	0.51	-1.4
3,737,048	+		PGA1_c35640	0.51	-1.3
3,737,143	+		PGA1_c35640	0.56	-1.4
3,737,148	+		PGA1_c35640	0.57	-1.1
3,737,149	-		PGA1_c35640	0.57	-1.6
3,737,156	-		PGA1_c35640	0.57	-1.4
3,737,163	+		PGA1_c35640	0.58	-1.7
3,737,171	-		PGA1_c35640	0.58	+0.8
3,737,185	-		PGA1_c35640	0.59	+0.2
3,737,243	+		PGA1_c35640	0.62	-0.7
3,737,294	-		PGA1_c35640	0.65	-0.7
3,737,309	+		PGA1_c35640	0.66	+0.1
3,737,309	+		PGA1_c35640	0.66	-2.1
3,737,396	+		PGA1_c35640	0.71	-0.4
3,737,396	+		PGA1_c35640	0.71	-1.0
3,737,404	-		PGA1_c35640	0.72	+1.2
3,737,404	-		PGA1_c35640	0.72	-1.2
3,737,404	-		PGA1_c35640	0.72	-0.7
3,737,417	+		PGA1_c35640	0.73	-0.5
3,737,454	+		PGA1_c35640	0.75	-1.3
3,737,459	+		PGA1_c35640	0.75	-2.7
3,737,462	-		PGA1_c35640	0.75	-0.8
3,737,462	-		PGA1_c35640	0.75	-0.7
3,737,467	-		PGA1_c35640	0.76	+0.1
3,737,467	-		PGA1_c35640	0.76	+0.3
3,737,467	-		PGA1_c35640	0.76	+0.3
3,737,477	-		PGA1_c35640	0.76	-0.1
3,737,487	-		PGA1_c35640	0.77	-1.0
3,737,542	-		PGA1_c35640	0.80	+0.4
3,737,567	+		PGA1_c35640	0.82	-0.5
3,737,677	-		PGA1_c35640	0.88	+0.4
3,737,688	-		PGA1_c35640	0.89	+0.4
3,737,688	-		PGA1_c35640	0.89	-0.6
3,737,690	+		PGA1_c35640	0.89	-0.2
3,737,690	+		PGA1_c35640	0.89	-1.3
3,737,690	+		PGA1_c35640	0.89	+0.4
3,737,690	+		PGA1_c35640	0.89	-0.0
3,737,690	+		PGA1_c35640	0.89	-1.5
3,737,690	+		PGA1_c35640	0.89	-1.7
3,737,698	-		PGA1_c35640	0.89	-0.2
3,737,698	-		PGA1_c35640	0.89	-0.7
3,737,698	-		PGA1_c35640	0.89	+0.4
3,737,698	-		PGA1_c35640	0.89	-2.3
3,737,698	-		PGA1_c35640	0.89	-1.1
3,737,698	-		PGA1_c35640	0.89	+0.4
3,737,698	-		PGA1_c35640	0.89	-1.6
3,737,698	-		PGA1_c35640	0.89	-0.7
3,737,698	-		PGA1_c35640	0.89	-0.3
3,737,698	-		PGA1_c35640	0.89	-2.3
3,737,698	-		PGA1_c35640	0.89	+0.4
3,737,698	-		PGA1_c35640	0.89	-0.7
3,737,698	-		PGA1_c35640	0.89	-0.5
3,737,698	-		PGA1_c35640	0.89	+0.0
3,737,705	+		PGA1_c35640	0.90	-0.5
3,737,705	+		PGA1_c35640	0.90	-0.7
3,737,709	+				-1.6
3,737,713	-				-0.4
3,737,713	-				-2.0
3,737,713	-				+0.1
3,737,778	-				-0.4
3,737,807	+				-0.7
3,737,841	+				+0.4
3,737,849	-				-1.0
3,737,849	-				-0.5
3,737,860	+				-0.2
3,737,868	-				-1.2
3,737,868	-				+0.1
3,737,868	-				+0.0
3,737,893	-				+0.1
3,737,939	+				+1.0
3,737,939	-				+0.3
3,737,947	-				-0.8
3,737,952	-				+0.1
3,737,957	-				-0.5
3,738,015	-				+1.4
3,738,027	-				+0.9
3,738,027	-				+0.5
3,738,073	-		PGA1_c35650	0.15	-0.0
3,738,089	+		PGA1_c35650	0.18	-0.4
3,738,128	+		PGA1_c35650	0.25	-0.7
3,738,145	+		PGA1_c35650	0.29	+0.7
3,738,154	-		PGA1_c35650	0.30	-0.0
3,738,184	+		PGA1_c35650	0.36	-0.6
3,738,189	+		PGA1_c35650	0.37	+0.6
3,738,261	+		PGA1_c35650	0.51	-0.6
3,738,269	-		PGA1_c35650	0.52	+0.5
3,738,299	-		PGA1_c35650	0.58	-0.1
3,738,313	+		PGA1_c35650	0.61	-1.5
3,738,372	-		PGA1_c35650	0.72	-0.5
3,738,374	-		PGA1_c35650	0.72	-3.4
3,738,379	-		PGA1_c35650	0.73	+0.6
3,738,386	-		PGA1_c35650	0.74	-0.6
3,738,469	+				-0.1
3,738,469	+				-2.6
3,738,469	+				-0.8
3,738,535	-				+0.1
3,738,535	-				+0.0
3,738,535	-				-1.1
3,738,535	-				-0.4
3,738,535	-				-0.7
3,738,577	+		PGA1_c35660	0.10	-0.4
3,738,585	-		PGA1_c35660	0.12	-2.2
3,738,587	+		PGA1_c35660	0.12	-0.2
3,738,647	-		PGA1_c35660	0.25	-0.5
3,738,649	+		PGA1_c35660	0.26	-0.7
3,738,730	+		PGA1_c35660	0.43	-0.5
3,738,730	+		PGA1_c35660	0.43	-1.4
3,738,733	-		PGA1_c35660	0.44	+0.7
3,738,773	+		PGA1_c35660	0.52	-1.4