Strain Fitness in Marinobacter adhaerens HP15 around HP15_3363

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3362 and HP15_3363 are separated by 12 nucleotidesHP15_3363 and HP15_3364 overlap by 9 nucleotidesHP15_3364 and HP15_3365 are separated by 35 nucleotides HP15_3362: HP15_3362 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,523,777 to 3,526,380 _3362 HP15_3363: HP15_3363 - dihydroxy-acid dehydratase, at 3,526,393 to 3,528,081 _3363 HP15_3364: HP15_3364 - hypothetical protein, at 3,528,073 to 3,528,258 _3364 HP15_3365: HP15_3365 - D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase, at 3,528,294 to 3,530,711 _3365 Position (kb) 3526 3527 3528 3529Strain fitness (log2 ratio) -3 -2 -1 0 1at 3525.500 kb on + strand, within HP15_3362at 3525.500 kb on + strand, within HP15_3362at 3525.576 kb on - strand, within HP15_3362at 3525.629 kb on + strand, within HP15_3362at 3525.812 kb on - strand, within HP15_3362at 3525.965 kb on + strand, within HP15_3362at 3526.151 kb on - strandat 3526.232 kb on + strandat 3526.270 kb on - strandat 3526.318 kb on - strandat 3526.325 kb on - strandat 3526.330 kb on - strandat 3526.358 kb on + strandat 3526.358 kb on + strandat 3526.374 kb on + strandat 3526.386 kb on + strandat 3526.391 kb on + strandat 3526.391 kb on + strandat 3526.391 kb on + strandat 3526.394 kb on - strandat 3526.399 kb on - strandat 3526.404 kb on - strandat 3526.582 kb on + strand, within HP15_3363at 3526.585 kb on - strand, within HP15_3363at 3526.667 kb on + strand, within HP15_3363at 3526.698 kb on - strand, within HP15_3363at 3526.698 kb on - strand, within HP15_3363at 3526.753 kb on + strandat 3526.802 kb on - strand, within HP15_3363at 3526.880 kb on + strand, within HP15_3363at 3526.939 kb on + strand, within HP15_3363at 3527.025 kb on + strand, within HP15_3363at 3527.219 kb on + strand, within HP15_3363at 3527.252 kb on - strand, within HP15_3363at 3527.266 kb on - strand, within HP15_3363at 3527.398 kb on - strand, within HP15_3363at 3527.457 kb on + strand, within HP15_3363at 3527.478 kb on + strand, within HP15_3363at 3527.523 kb on + strand, within HP15_3363at 3527.527 kb on - strand, within HP15_3363at 3527.629 kb on + strand, within HP15_3363at 3527.631 kb on - strand, within HP15_3363at 3527.647 kb on + strand, within HP15_3363at 3527.678 kb on + strand, within HP15_3363at 3527.763 kb on + strand, within HP15_3363at 3527.793 kb on + strand, within HP15_3363at 3527.929 kb on - strandat 3527.995 kb on - strandat 3528.073 kb on - strandat 3528.333 kb on + strandat 3528.369 kb on - strandat 3528.389 kb on - strandat 3528.468 kb on + strandat 3528.480 kb on + strandat 3528.494 kb on - strandat 3528.508 kb on - strandat 3528.534 kb on + strandat 3528.576 kb on + strand, within HP15_3365at 3528.725 kb on - strand, within HP15_3365at 3528.725 kb on - strand, within HP15_3365at 3528.996 kb on + strand, within HP15_3365at 3529.043 kb on - strand, within HP15_3365at 3529.043 kb on - strand, within HP15_3365

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
3,525,500 + HP15_3362 0.66 -1.4
3,525,500 + HP15_3362 0.66 +1.1
3,525,576 - HP15_3362 0.69 +0.7
3,525,629 + HP15_3362 0.71 -1.4
3,525,812 - HP15_3362 0.78 -2.0
3,525,965 + HP15_3362 0.84 +0.6
3,526,151 - -0.5
3,526,232 + -0.1
3,526,270 - +0.4
3,526,318 - +1.0
3,526,325 - -2.8
3,526,330 - -2.6
3,526,358 + -1.3
3,526,358 + +1.5
3,526,374 + -0.6
3,526,386 + -0.8
3,526,391 + -0.7
3,526,391 + -0.1
3,526,391 + +0.2
3,526,394 - -2.4
3,526,399 - -2.1
3,526,404 - -0.1
3,526,582 + HP15_3363 0.11 -1.6
3,526,585 - HP15_3363 0.11 -1.5
3,526,667 + HP15_3363 0.16 +0.3
3,526,698 - HP15_3363 0.18 -1.4
3,526,698 - HP15_3363 0.18 -1.4
3,526,753 + +1.0
3,526,802 - HP15_3363 0.24 -1.5
3,526,880 + HP15_3363 0.29 -0.5
3,526,939 + HP15_3363 0.32 -0.5
3,527,025 + HP15_3363 0.37 -0.2
3,527,219 + HP15_3363 0.49 -0.5
3,527,252 - HP15_3363 0.51 -2.0
3,527,266 - HP15_3363 0.52 +0.9
3,527,398 - HP15_3363 0.60 -0.8
3,527,457 + HP15_3363 0.63 -0.0
3,527,478 + HP15_3363 0.64 +0.2
3,527,523 + HP15_3363 0.67 +0.3
3,527,527 - HP15_3363 0.67 -2.5
3,527,629 + HP15_3363 0.73 +1.2
3,527,631 - HP15_3363 0.73 +0.2
3,527,647 + HP15_3363 0.74 -0.8
3,527,678 + HP15_3363 0.76 +0.3
3,527,763 + HP15_3363 0.81 +0.9
3,527,793 + HP15_3363 0.83 +0.1
3,527,929 - -2.0
3,527,995 - -2.2
3,528,073 - +0.0
3,528,333 + -1.1
3,528,369 - +0.3
3,528,389 - +0.1
3,528,468 + +0.3
3,528,480 + +0.4
3,528,494 - -2.4
3,528,508 - +0.5
3,528,534 + +0.7
3,528,576 + HP15_3365 0.12 +0.8
3,528,725 - HP15_3365 0.18 -1.6
3,528,725 - HP15_3365 0.18 -1.4
3,528,996 + HP15_3365 0.29 -1.2
3,529,043 - HP15_3365 0.31 -2.9
3,529,043 - HP15_3365 0.31 -0.2

Or see this region's nucleotide sequence