Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3345 and HP15_3346 are separated by 79 nucleotides HP15_3346 and HP15_3347 are separated by 102 nucleotides
HP15_3345: HP15_3345 - GGDEF domain protein, at 3,506,824 to 3,507,927
_3345
HP15_3346: HP15_3346 - flavodoxin/nitric oxide synthase, at 3,508,007 to 3,508,453
_3346
HP15_3347: HP15_3347 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,508,556 to 3,511,114
_3347
Position (kb)
3508
3509 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3507.007 kb on + strand, within HP15_3345 at 3507.092 kb on - strand, within HP15_3345 at 3507.093 kb on - strand, within HP15_3345 at 3507.221 kb on + strand, within HP15_3345 at 3507.258 kb on - strand, within HP15_3345 at 3507.258 kb on - strand, within HP15_3345 at 3507.301 kb on + strand, within HP15_3345 at 3507.301 kb on + strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.309 kb on - strand, within HP15_3345 at 3507.375 kb on - strand, within HP15_3345 at 3507.400 kb on + strand, within HP15_3345 at 3507.455 kb on - strand, within HP15_3345 at 3507.500 kb on + strand, within HP15_3345 at 3507.505 kb on + strand, within HP15_3345 at 3507.505 kb on + strand, within HP15_3345 at 3507.515 kb on + strand, within HP15_3345 at 3507.523 kb on - strand, within HP15_3345 at 3507.525 kb on + strand, within HP15_3345 at 3507.686 kb on + strand, within HP15_3345 at 3507.692 kb on + strand, within HP15_3345 at 3507.693 kb on - strand, within HP15_3345 at 3507.698 kb on - strand, within HP15_3345 at 3507.710 kb on + strand, within HP15_3345 at 3507.718 kb on - strand, within HP15_3345 at 3507.718 kb on - strand, within HP15_3345 at 3507.746 kb on - strand, within HP15_3345 at 3507.790 kb on + strand, within HP15_3345 at 3507.829 kb on - strand at 3507.883 kb on + strand at 3507.930 kb on - strand at 3508.082 kb on - strand, within HP15_3346 at 3508.162 kb on + strand, within HP15_3346 at 3508.176 kb on + strand, within HP15_3346 at 3508.179 kb on - strand, within HP15_3346 at 3508.212 kb on + strand, within HP15_3346 at 3508.353 kb on + strand, within HP15_3346 at 3508.373 kb on + strand, within HP15_3346 at 3508.420 kb on + strand at 3508.423 kb on - strand at 3508.428 kb on - strand at 3508.445 kb on - strand at 3508.445 kb on - strand at 3508.447 kb on + strand at 3508.447 kb on + strand at 3508.455 kb on - strand at 3508.455 kb on - strand at 3508.481 kb on + strand at 3508.624 kb on + strand at 3508.851 kb on + strand, within HP15_3347 at 3508.859 kb on - strand, within HP15_3347 at 3508.921 kb on + strand, within HP15_3347 at 3508.928 kb on + strand, within HP15_3347 at 3508.936 kb on - strand, within HP15_3347 at 3509.004 kb on - strand, within HP15_3347 at 3509.050 kb on - strand, within HP15_3347 at 3509.193 kb on + strand, within HP15_3347 at 3509.193 kb on + strand, within HP15_3347 at 3509.215 kb on + strand, within HP15_3347 at 3509.250 kb on + strand, within HP15_3347 at 3509.258 kb on - strand, within HP15_3347 at 3509.307 kb on + strand, within HP15_3347 at 3509.312 kb on + strand, within HP15_3347 at 3509.320 kb on - strand, within HP15_3347 at 3509.342 kb on - strand, within HP15_3347 at 3509.344 kb on + strand, within HP15_3347 at 3509.344 kb on + strand, within HP15_3347 at 3509.354 kb on + strand, within HP15_3347 at 3509.357 kb on - strand, within HP15_3347 at 3509.362 kb on - strand, within HP15_3347 at 3509.362 kb on - strand, within HP15_3347 at 3509.374 kb on + strand, within HP15_3347 at 3509.446 kb on + strand, within HP15_3347 at 3509.447 kb on + strand, within HP15_3347
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 3,507,007 + HP15_3345 0.17 +0.2 3,507,092 - HP15_3345 0.24 -0.4 3,507,093 - HP15_3345 0.24 +0.1 3,507,221 + HP15_3345 0.36 +0.6 3,507,258 - HP15_3345 0.39 +1.1 3,507,258 - HP15_3345 0.39 -2.4 3,507,301 + HP15_3345 0.43 +0.3 3,507,301 + HP15_3345 0.43 +0.4 3,507,309 - HP15_3345 0.44 +1.3 3,507,309 - HP15_3345 0.44 -0.1 3,507,309 - HP15_3345 0.44 -3.3 3,507,375 - HP15_3345 0.50 -0.6 3,507,400 + HP15_3345 0.52 -1.9 3,507,455 - HP15_3345 0.57 -1.3 3,507,500 + HP15_3345 0.61 +0.7 3,507,505 + HP15_3345 0.62 -0.1 3,507,505 + HP15_3345 0.62 -0.0 3,507,515 + HP15_3345 0.63 -0.6 3,507,523 - HP15_3345 0.63 -0.0 3,507,525 + HP15_3345 0.63 +0.0 3,507,686 + HP15_3345 0.78 +0.8 3,507,692 + HP15_3345 0.79 +1.4 3,507,693 - HP15_3345 0.79 -2.5 3,507,698 - HP15_3345 0.79 -3.1 3,507,710 + HP15_3345 0.80 +0.3 3,507,718 - HP15_3345 0.81 +0.2 3,507,718 - HP15_3345 0.81 -2.5 3,507,746 - HP15_3345 0.84 +0.2 3,507,790 + HP15_3345 0.88 -0.0 3,507,829 - -0.5 3,507,883 + -1.7 3,507,930 - -2.2 3,508,082 - HP15_3346 0.17 -2.2 3,508,162 + HP15_3346 0.35 -2.3 3,508,176 + HP15_3346 0.38 -1.0 3,508,179 - HP15_3346 0.38 -0.4 3,508,212 + HP15_3346 0.46 +0.7 3,508,353 + HP15_3346 0.77 +0.1 3,508,373 + HP15_3346 0.82 -1.9 3,508,420 + -0.3 3,508,423 - +0.3 3,508,428 - +0.6 3,508,445 - -0.8 3,508,445 - +0.9 3,508,447 + +0.6 3,508,447 + +0.2 3,508,455 - -2.3 3,508,455 - +0.3 3,508,481 + -0.0 3,508,624 + +0.1 3,508,851 + HP15_3347 0.12 +0.4 3,508,859 - HP15_3347 0.12 -0.2 3,508,921 + HP15_3347 0.14 +0.9 3,508,928 + HP15_3347 0.15 -1.6 3,508,936 - HP15_3347 0.15 -0.7 3,509,004 - HP15_3347 0.18 -0.2 3,509,050 - HP15_3347 0.19 -0.4 3,509,193 + HP15_3347 0.25 -1.0 3,509,193 + HP15_3347 0.25 -0.8 3,509,215 + HP15_3347 0.26 -0.4 3,509,250 + HP15_3347 0.27 +0.4 3,509,258 - HP15_3347 0.27 +0.2 3,509,307 + HP15_3347 0.29 -1.9 3,509,312 + HP15_3347 0.30 +0.2 3,509,320 - HP15_3347 0.30 -0.1 3,509,342 - HP15_3347 0.31 -0.5 3,509,344 + HP15_3347 0.31 -1.9 3,509,344 + HP15_3347 0.31 -0.3 3,509,354 + HP15_3347 0.31 +2.0 3,509,357 - HP15_3347 0.31 +0.3 3,509,362 - HP15_3347 0.31 +0.7 3,509,362 - HP15_3347 0.31 +0.4 3,509,374 + HP15_3347 0.32 +0.3 3,509,446 + HP15_3347 0.35 +0.0 3,509,447 + HP15_3347 0.35 -1.1
Or see this region's nucleotide sequence