Strain Fitness in Marinobacter adhaerens HP15 around HP15_3346

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3345 and HP15_3346 are separated by 79 nucleotidesHP15_3346 and HP15_3347 are separated by 102 nucleotides HP15_3345: HP15_3345 - GGDEF domain protein, at 3,506,824 to 3,507,927 _3345 HP15_3346: HP15_3346 - flavodoxin/nitric oxide synthase, at 3,508,007 to 3,508,453 _3346 HP15_3347: HP15_3347 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s), at 3,508,556 to 3,511,114 _3347 Position (kb) 3508 3509Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3507.007 kb on + strand, within HP15_3345at 3507.092 kb on - strand, within HP15_3345at 3507.093 kb on - strand, within HP15_3345at 3507.221 kb on + strand, within HP15_3345at 3507.258 kb on - strand, within HP15_3345at 3507.258 kb on - strand, within HP15_3345at 3507.301 kb on + strand, within HP15_3345at 3507.301 kb on + strand, within HP15_3345at 3507.309 kb on - strand, within HP15_3345at 3507.309 kb on - strand, within HP15_3345at 3507.309 kb on - strand, within HP15_3345at 3507.375 kb on - strand, within HP15_3345at 3507.400 kb on + strand, within HP15_3345at 3507.455 kb on - strand, within HP15_3345at 3507.500 kb on + strand, within HP15_3345at 3507.505 kb on + strand, within HP15_3345at 3507.505 kb on + strand, within HP15_3345at 3507.515 kb on + strand, within HP15_3345at 3507.523 kb on - strand, within HP15_3345at 3507.525 kb on + strand, within HP15_3345at 3507.686 kb on + strand, within HP15_3345at 3507.692 kb on + strand, within HP15_3345at 3507.693 kb on - strand, within HP15_3345at 3507.698 kb on - strand, within HP15_3345at 3507.710 kb on + strand, within HP15_3345at 3507.718 kb on - strand, within HP15_3345at 3507.718 kb on - strand, within HP15_3345at 3507.746 kb on - strand, within HP15_3345at 3507.790 kb on + strand, within HP15_3345at 3507.829 kb on - strandat 3507.883 kb on + strandat 3507.930 kb on - strandat 3508.082 kb on - strand, within HP15_3346at 3508.162 kb on + strand, within HP15_3346at 3508.176 kb on + strand, within HP15_3346at 3508.179 kb on - strand, within HP15_3346at 3508.212 kb on + strand, within HP15_3346at 3508.353 kb on + strand, within HP15_3346at 3508.373 kb on + strand, within HP15_3346at 3508.420 kb on + strandat 3508.423 kb on - strandat 3508.428 kb on - strandat 3508.445 kb on - strandat 3508.445 kb on - strandat 3508.447 kb on + strandat 3508.447 kb on + strandat 3508.455 kb on - strandat 3508.455 kb on - strandat 3508.481 kb on + strandat 3508.624 kb on + strandat 3508.851 kb on + strand, within HP15_3347at 3508.859 kb on - strand, within HP15_3347at 3508.921 kb on + strand, within HP15_3347at 3508.928 kb on + strand, within HP15_3347at 3508.936 kb on - strand, within HP15_3347at 3509.004 kb on - strand, within HP15_3347at 3509.050 kb on - strand, within HP15_3347at 3509.193 kb on + strand, within HP15_3347at 3509.193 kb on + strand, within HP15_3347at 3509.215 kb on + strand, within HP15_3347at 3509.250 kb on + strand, within HP15_3347at 3509.258 kb on - strand, within HP15_3347at 3509.307 kb on + strand, within HP15_3347at 3509.312 kb on + strand, within HP15_3347at 3509.320 kb on - strand, within HP15_3347at 3509.342 kb on - strand, within HP15_3347at 3509.344 kb on + strand, within HP15_3347at 3509.344 kb on + strand, within HP15_3347at 3509.354 kb on + strand, within HP15_3347at 3509.357 kb on - strand, within HP15_3347at 3509.362 kb on - strand, within HP15_3347at 3509.362 kb on - strand, within HP15_3347at 3509.374 kb on + strand, within HP15_3347at 3509.446 kb on + strand, within HP15_3347at 3509.447 kb on + strand, within HP15_3347

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,507,007 + HP15_3345 0.17 +0.2
3,507,092 - HP15_3345 0.24 -0.4
3,507,093 - HP15_3345 0.24 +0.1
3,507,221 + HP15_3345 0.36 +0.6
3,507,258 - HP15_3345 0.39 +1.1
3,507,258 - HP15_3345 0.39 -2.4
3,507,301 + HP15_3345 0.43 +0.3
3,507,301 + HP15_3345 0.43 +0.4
3,507,309 - HP15_3345 0.44 +1.3
3,507,309 - HP15_3345 0.44 -0.1
3,507,309 - HP15_3345 0.44 -3.3
3,507,375 - HP15_3345 0.50 -0.6
3,507,400 + HP15_3345 0.52 -1.9
3,507,455 - HP15_3345 0.57 -1.3
3,507,500 + HP15_3345 0.61 +0.7
3,507,505 + HP15_3345 0.62 -0.1
3,507,505 + HP15_3345 0.62 -0.0
3,507,515 + HP15_3345 0.63 -0.6
3,507,523 - HP15_3345 0.63 -0.0
3,507,525 + HP15_3345 0.63 +0.0
3,507,686 + HP15_3345 0.78 +0.8
3,507,692 + HP15_3345 0.79 +1.4
3,507,693 - HP15_3345 0.79 -2.5
3,507,698 - HP15_3345 0.79 -3.1
3,507,710 + HP15_3345 0.80 +0.3
3,507,718 - HP15_3345 0.81 +0.2
3,507,718 - HP15_3345 0.81 -2.5
3,507,746 - HP15_3345 0.84 +0.2
3,507,790 + HP15_3345 0.88 -0.0
3,507,829 - -0.5
3,507,883 + -1.7
3,507,930 - -2.2
3,508,082 - HP15_3346 0.17 -2.2
3,508,162 + HP15_3346 0.35 -2.3
3,508,176 + HP15_3346 0.38 -1.0
3,508,179 - HP15_3346 0.38 -0.4
3,508,212 + HP15_3346 0.46 +0.7
3,508,353 + HP15_3346 0.77 +0.1
3,508,373 + HP15_3346 0.82 -1.9
3,508,420 + -0.3
3,508,423 - +0.3
3,508,428 - +0.6
3,508,445 - -0.8
3,508,445 - +0.9
3,508,447 + +0.6
3,508,447 + +0.2
3,508,455 - -2.3
3,508,455 - +0.3
3,508,481 + -0.0
3,508,624 + +0.1
3,508,851 + HP15_3347 0.12 +0.4
3,508,859 - HP15_3347 0.12 -0.2
3,508,921 + HP15_3347 0.14 +0.9
3,508,928 + HP15_3347 0.15 -1.6
3,508,936 - HP15_3347 0.15 -0.7
3,509,004 - HP15_3347 0.18 -0.2
3,509,050 - HP15_3347 0.19 -0.4
3,509,193 + HP15_3347 0.25 -1.0
3,509,193 + HP15_3347 0.25 -0.8
3,509,215 + HP15_3347 0.26 -0.4
3,509,250 + HP15_3347 0.27 +0.4
3,509,258 - HP15_3347 0.27 +0.2
3,509,307 + HP15_3347 0.29 -1.9
3,509,312 + HP15_3347 0.30 +0.2
3,509,320 - HP15_3347 0.30 -0.1
3,509,342 - HP15_3347 0.31 -0.5
3,509,344 + HP15_3347 0.31 -1.9
3,509,344 + HP15_3347 0.31 -0.3
3,509,354 + HP15_3347 0.31 +2.0
3,509,357 - HP15_3347 0.31 +0.3
3,509,362 - HP15_3347 0.31 +0.7
3,509,362 - HP15_3347 0.31 +0.4
3,509,374 + HP15_3347 0.32 +0.3
3,509,446 + HP15_3347 0.35 +0.0
3,509,447 + HP15_3347 0.35 -1.1

Or see this region's nucleotide sequence