Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3024 and HP15_3025 are separated by 39 nucleotides HP15_3025 and HP15_3026 are separated by 22 nucleotides HP15_3026 and HP15_3027 are separated by 29 nucleotides HP15_3027 and HP15_3028 are separated by 99 nucleotides
HP15_3024: HP15_3024 - FAD linked oxidase domain protein, at 3,168,091 to 3,169,563
_3024
HP15_3025: HP15_3025 - glcG protein, at 3,169,603 to 3,170,028
_3025
HP15_3026: HP15_3026 - TRAP dicarboxylate transporter, DctM subunit, at 3,170,051 to 3,171,550
_3026
HP15_3027: HP15_3027 - TRAP transporter, DctQ-like membrane protein, at 3,171,580 to 3,172,284
_3027
HP15_3028: HP15_3028 - TRAP-type D-lactate transporter, periplasmic component (from data) , at 3,172,384 to 3,173,574
_3028
Position (kb)
3170
3171
3172 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3169.065 kb on - strand, within HP15_3024 at 3169.149 kb on + strand, within HP15_3024 at 3169.166 kb on + strand, within HP15_3024 at 3169.179 kb on - strand, within HP15_3024 at 3169.209 kb on + strand, within HP15_3024 at 3169.289 kb on - strand, within HP15_3024 at 3169.328 kb on - strand, within HP15_3024 at 3169.347 kb on - strand, within HP15_3024 at 3169.392 kb on + strand, within HP15_3024 at 3169.400 kb on - strand, within HP15_3024 at 3169.599 kb on + strand at 3169.599 kb on - strand at 3169.626 kb on + strand at 3169.690 kb on + strand, within HP15_3025 at 3169.797 kb on + strand, within HP15_3025 at 3169.801 kb on + strand, within HP15_3025 at 3169.814 kb on - strand, within HP15_3025 at 3169.844 kb on + strand, within HP15_3025 at 3169.936 kb on + strand, within HP15_3025 at 3170.012 kb on - strand at 3170.055 kb on + strand at 3170.103 kb on + strand at 3170.103 kb on + strand at 3170.103 kb on + strand at 3170.105 kb on + strand at 3170.111 kb on - strand at 3170.111 kb on - strand at 3170.146 kb on - strand at 3170.156 kb on - strand at 3170.195 kb on + strand at 3170.204 kb on - strand, within HP15_3026 at 3170.263 kb on - strand, within HP15_3026 at 3170.268 kb on + strand, within HP15_3026 at 3170.271 kb on - strand, within HP15_3026 at 3170.273 kb on + strand, within HP15_3026 at 3170.368 kb on + strand, within HP15_3026 at 3170.382 kb on - strand, within HP15_3026 at 3170.399 kb on - strand, within HP15_3026 at 3170.415 kb on + strand, within HP15_3026 at 3170.426 kb on + strand, within HP15_3026 at 3170.498 kb on - strand, within HP15_3026 at 3170.518 kb on - strand, within HP15_3026 at 3170.557 kb on - strand, within HP15_3026 at 3170.708 kb on - strand, within HP15_3026 at 3170.739 kb on + strand, within HP15_3026 at 3170.762 kb on + strand, within HP15_3026 at 3170.839 kb on + strand, within HP15_3026 at 3170.856 kb on - strand, within HP15_3026 at 3170.866 kb on - strand, within HP15_3026 at 3170.899 kb on + strand, within HP15_3026 at 3171.038 kb on + strand, within HP15_3026 at 3171.051 kb on + strand, within HP15_3026 at 3171.063 kb on - strand, within HP15_3026 at 3171.068 kb on - strand, within HP15_3026 at 3171.098 kb on + strand, within HP15_3026 at 3171.106 kb on - strand, within HP15_3026 at 3171.120 kb on - strand, within HP15_3026 at 3171.264 kb on + strand, within HP15_3026 at 3171.299 kb on + strand, within HP15_3026 at 3171.374 kb on - strand, within HP15_3026 at 3171.478 kb on + strand at 3171.486 kb on - strand at 3171.557 kb on + strand at 3171.613 kb on - strand at 3171.692 kb on + strand, within HP15_3027 at 3171.692 kb on + strand, within HP15_3027 at 3171.692 kb on + strand, within HP15_3027 at 3171.700 kb on - strand, within HP15_3027 at 3171.700 kb on - strand, within HP15_3027 at 3171.775 kb on - strand, within HP15_3027 at 3171.858 kb on - strand, within HP15_3027 at 3171.908 kb on + strand, within HP15_3027 at 3172.030 kb on - strand, within HP15_3027 at 3172.090 kb on + strand, within HP15_3027 at 3172.236 kb on + strand at 3172.244 kb on - strand at 3172.320 kb on + strand at 3172.321 kb on + strand at 3172.391 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 3,169,065 - HP15_3024 0.66 +0.1 3,169,149 + HP15_3024 0.72 +0.5 3,169,166 + HP15_3024 0.73 -0.3 3,169,179 - HP15_3024 0.74 -1.1 3,169,209 + HP15_3024 0.76 +0.1 3,169,289 - HP15_3024 0.81 +0.1 3,169,328 - HP15_3024 0.84 +0.2 3,169,347 - HP15_3024 0.85 +0.6 3,169,392 + HP15_3024 0.88 -1.0 3,169,400 - HP15_3024 0.89 +0.5 3,169,599 + +0.0 3,169,599 - -1.1 3,169,626 + -1.8 3,169,690 + HP15_3025 0.20 -1.7 3,169,797 + HP15_3025 0.46 +0.0 3,169,801 + HP15_3025 0.46 +0.4 3,169,814 - HP15_3025 0.50 +0.1 3,169,844 + HP15_3025 0.57 -0.7 3,169,936 + HP15_3025 0.78 -0.0 3,170,012 - +1.0 3,170,055 + -1.2 3,170,103 + +1.2 3,170,103 + -1.8 3,170,103 + -2.3 3,170,105 + -0.8 3,170,111 - +0.5 3,170,111 - +1.4 3,170,146 - -0.4 3,170,156 - +1.3 3,170,195 + +0.6 3,170,204 - HP15_3026 0.10 +0.1 3,170,263 - HP15_3026 0.14 -0.0 3,170,268 + HP15_3026 0.14 -1.1 3,170,271 - HP15_3026 0.15 +0.4 3,170,273 + HP15_3026 0.15 +1.7 3,170,368 + HP15_3026 0.21 +0.4 3,170,382 - HP15_3026 0.22 +1.1 3,170,399 - HP15_3026 0.23 +0.3 3,170,415 + HP15_3026 0.24 -1.1 3,170,426 + HP15_3026 0.25 +0.0 3,170,498 - HP15_3026 0.30 -0.8 3,170,518 - HP15_3026 0.31 +0.1 3,170,557 - HP15_3026 0.34 +0.5 3,170,708 - HP15_3026 0.44 -0.5 3,170,739 + HP15_3026 0.46 +0.2 3,170,762 + HP15_3026 0.47 +0.8 3,170,839 + HP15_3026 0.53 +0.3 3,170,856 - HP15_3026 0.54 +0.4 3,170,866 - HP15_3026 0.54 -0.1 3,170,899 + HP15_3026 0.57 -1.9 3,171,038 + HP15_3026 0.66 +0.6 3,171,051 + HP15_3026 0.67 +1.1 3,171,063 - HP15_3026 0.67 +0.4 3,171,068 - HP15_3026 0.68 +0.2 3,171,098 + HP15_3026 0.70 +0.9 3,171,106 - HP15_3026 0.70 +0.2 3,171,120 - HP15_3026 0.71 -1.2 3,171,264 + HP15_3026 0.81 +1.2 3,171,299 + HP15_3026 0.83 +0.3 3,171,374 - HP15_3026 0.88 -0.3 3,171,478 + -0.3 3,171,486 - +0.0 3,171,557 + -0.7 3,171,613 - +0.1 3,171,692 + HP15_3027 0.16 -2.2 3,171,692 + HP15_3027 0.16 -1.2 3,171,692 + HP15_3027 0.16 +0.1 3,171,700 - HP15_3027 0.17 -0.4 3,171,700 - HP15_3027 0.17 +0.3 3,171,775 - HP15_3027 0.28 +0.4 3,171,858 - HP15_3027 0.39 +0.3 3,171,908 + HP15_3027 0.47 +0.2 3,172,030 - HP15_3027 0.64 -1.2 3,172,090 + HP15_3027 0.72 +0.7 3,172,236 + -3.6 3,172,244 - -0.9 3,172,320 + -0.0 3,172,321 + +0.4 3,172,391 + -1.0
Or see this region's nucleotide sequence