Strain Fitness in Marinobacter adhaerens HP15 around HP15_3026

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3024 and HP15_3025 are separated by 39 nucleotidesHP15_3025 and HP15_3026 are separated by 22 nucleotidesHP15_3026 and HP15_3027 are separated by 29 nucleotidesHP15_3027 and HP15_3028 are separated by 99 nucleotides HP15_3024: HP15_3024 - FAD linked oxidase domain protein, at 3,168,091 to 3,169,563 _3024 HP15_3025: HP15_3025 - glcG protein, at 3,169,603 to 3,170,028 _3025 HP15_3026: HP15_3026 - TRAP dicarboxylate transporter, DctM subunit, at 3,170,051 to 3,171,550 _3026 HP15_3027: HP15_3027 - TRAP transporter, DctQ-like membrane protein, at 3,171,580 to 3,172,284 _3027 HP15_3028: HP15_3028 - TRAP-type D-lactate transporter, periplasmic component (from data), at 3,172,384 to 3,173,574 _3028 Position (kb) 3170 3171 3172Strain fitness (log2 ratio) -3 -2 -1 0 1at 3169.065 kb on - strand, within HP15_3024at 3169.149 kb on + strand, within HP15_3024at 3169.166 kb on + strand, within HP15_3024at 3169.179 kb on - strand, within HP15_3024at 3169.209 kb on + strand, within HP15_3024at 3169.289 kb on - strand, within HP15_3024at 3169.328 kb on - strand, within HP15_3024at 3169.347 kb on - strand, within HP15_3024at 3169.392 kb on + strand, within HP15_3024at 3169.400 kb on - strand, within HP15_3024at 3169.599 kb on + strandat 3169.599 kb on - strandat 3169.626 kb on + strandat 3169.690 kb on + strand, within HP15_3025at 3169.797 kb on + strand, within HP15_3025at 3169.801 kb on + strand, within HP15_3025at 3169.814 kb on - strand, within HP15_3025at 3169.844 kb on + strand, within HP15_3025at 3169.936 kb on + strand, within HP15_3025at 3170.012 kb on - strandat 3170.055 kb on + strandat 3170.103 kb on + strandat 3170.103 kb on + strandat 3170.103 kb on + strandat 3170.105 kb on + strandat 3170.111 kb on - strandat 3170.111 kb on - strandat 3170.146 kb on - strandat 3170.156 kb on - strandat 3170.195 kb on + strandat 3170.204 kb on - strand, within HP15_3026at 3170.263 kb on - strand, within HP15_3026at 3170.268 kb on + strand, within HP15_3026at 3170.271 kb on - strand, within HP15_3026at 3170.273 kb on + strand, within HP15_3026at 3170.368 kb on + strand, within HP15_3026at 3170.382 kb on - strand, within HP15_3026at 3170.399 kb on - strand, within HP15_3026at 3170.415 kb on + strand, within HP15_3026at 3170.426 kb on + strand, within HP15_3026at 3170.498 kb on - strand, within HP15_3026at 3170.518 kb on - strand, within HP15_3026at 3170.557 kb on - strand, within HP15_3026at 3170.708 kb on - strand, within HP15_3026at 3170.739 kb on + strand, within HP15_3026at 3170.762 kb on + strand, within HP15_3026at 3170.839 kb on + strand, within HP15_3026at 3170.856 kb on - strand, within HP15_3026at 3170.866 kb on - strand, within HP15_3026at 3170.899 kb on + strand, within HP15_3026at 3171.038 kb on + strand, within HP15_3026at 3171.051 kb on + strand, within HP15_3026at 3171.063 kb on - strand, within HP15_3026at 3171.068 kb on - strand, within HP15_3026at 3171.098 kb on + strand, within HP15_3026at 3171.106 kb on - strand, within HP15_3026at 3171.120 kb on - strand, within HP15_3026at 3171.264 kb on + strand, within HP15_3026at 3171.299 kb on + strand, within HP15_3026at 3171.374 kb on - strand, within HP15_3026at 3171.478 kb on + strandat 3171.486 kb on - strandat 3171.557 kb on + strandat 3171.613 kb on - strandat 3171.692 kb on + strand, within HP15_3027at 3171.692 kb on + strand, within HP15_3027at 3171.692 kb on + strand, within HP15_3027at 3171.700 kb on - strand, within HP15_3027at 3171.700 kb on - strand, within HP15_3027at 3171.775 kb on - strand, within HP15_3027at 3171.858 kb on - strand, within HP15_3027at 3171.908 kb on + strand, within HP15_3027at 3172.030 kb on - strand, within HP15_3027at 3172.090 kb on + strand, within HP15_3027at 3172.236 kb on + strandat 3172.244 kb on - strandat 3172.320 kb on + strandat 3172.321 kb on + strandat 3172.391 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,169,065 - HP15_3024 0.66 +0.1
3,169,149 + HP15_3024 0.72 +0.5
3,169,166 + HP15_3024 0.73 -0.3
3,169,179 - HP15_3024 0.74 -1.1
3,169,209 + HP15_3024 0.76 +0.1
3,169,289 - HP15_3024 0.81 +0.1
3,169,328 - HP15_3024 0.84 +0.2
3,169,347 - HP15_3024 0.85 +0.6
3,169,392 + HP15_3024 0.88 -1.0
3,169,400 - HP15_3024 0.89 +0.5
3,169,599 + +0.0
3,169,599 - -1.1
3,169,626 + -1.8
3,169,690 + HP15_3025 0.20 -1.7
3,169,797 + HP15_3025 0.46 +0.0
3,169,801 + HP15_3025 0.46 +0.4
3,169,814 - HP15_3025 0.50 +0.1
3,169,844 + HP15_3025 0.57 -0.7
3,169,936 + HP15_3025 0.78 -0.0
3,170,012 - +1.0
3,170,055 + -1.2
3,170,103 + +1.2
3,170,103 + -1.8
3,170,103 + -2.3
3,170,105 + -0.8
3,170,111 - +0.5
3,170,111 - +1.4
3,170,146 - -0.4
3,170,156 - +1.3
3,170,195 + +0.6
3,170,204 - HP15_3026 0.10 +0.1
3,170,263 - HP15_3026 0.14 -0.0
3,170,268 + HP15_3026 0.14 -1.1
3,170,271 - HP15_3026 0.15 +0.4
3,170,273 + HP15_3026 0.15 +1.7
3,170,368 + HP15_3026 0.21 +0.4
3,170,382 - HP15_3026 0.22 +1.1
3,170,399 - HP15_3026 0.23 +0.3
3,170,415 + HP15_3026 0.24 -1.1
3,170,426 + HP15_3026 0.25 +0.0
3,170,498 - HP15_3026 0.30 -0.8
3,170,518 - HP15_3026 0.31 +0.1
3,170,557 - HP15_3026 0.34 +0.5
3,170,708 - HP15_3026 0.44 -0.5
3,170,739 + HP15_3026 0.46 +0.2
3,170,762 + HP15_3026 0.47 +0.8
3,170,839 + HP15_3026 0.53 +0.3
3,170,856 - HP15_3026 0.54 +0.4
3,170,866 - HP15_3026 0.54 -0.1
3,170,899 + HP15_3026 0.57 -1.9
3,171,038 + HP15_3026 0.66 +0.6
3,171,051 + HP15_3026 0.67 +1.1
3,171,063 - HP15_3026 0.67 +0.4
3,171,068 - HP15_3026 0.68 +0.2
3,171,098 + HP15_3026 0.70 +0.9
3,171,106 - HP15_3026 0.70 +0.2
3,171,120 - HP15_3026 0.71 -1.2
3,171,264 + HP15_3026 0.81 +1.2
3,171,299 + HP15_3026 0.83 +0.3
3,171,374 - HP15_3026 0.88 -0.3
3,171,478 + -0.3
3,171,486 - +0.0
3,171,557 + -0.7
3,171,613 - +0.1
3,171,692 + HP15_3027 0.16 -2.2
3,171,692 + HP15_3027 0.16 -1.2
3,171,692 + HP15_3027 0.16 +0.1
3,171,700 - HP15_3027 0.17 -0.4
3,171,700 - HP15_3027 0.17 +0.3
3,171,775 - HP15_3027 0.28 +0.4
3,171,858 - HP15_3027 0.39 +0.3
3,171,908 + HP15_3027 0.47 +0.2
3,172,030 - HP15_3027 0.64 -1.2
3,172,090 + HP15_3027 0.72 +0.7
3,172,236 + -3.6
3,172,244 - -0.9
3,172,320 + -0.0
3,172,321 + +0.4
3,172,391 + -1.0

Or see this region's nucleotide sequence