Strain Fitness in Marinobacter adhaerens HP15 around HP15_2969

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2968 and HP15_2969 overlap by 4 nucleotidesHP15_2969 and HP15_2970 are separated by 85 nucleotidesHP15_2970 and HP15_2971 overlap by 4 nucleotides HP15_2968: HP15_2968 - deoxyribodipyrimidine photo-lyase, at 3,112,385 to 3,114,001 _2968 HP15_2969: HP15_2969 - transcriptional regulator, MerR family, at 3,113,998 to 3,114,501 _2969 HP15_2970: HP15_2970 - cation efflux protein, at 3,114,587 to 3,115,240 _2970 HP15_2971: HP15_2971 - auxin efflux carrier, at 3,115,237 to 3,116,154 _2971 Position (kb) 3113 3114 3115Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3113.353 kb on + strand, within HP15_2968at 3113.402 kb on - strand, within HP15_2968at 3113.446 kb on + strand, within HP15_2968at 3113.562 kb on + strand, within HP15_2968at 3113.617 kb on + strand, within HP15_2968at 3113.625 kb on - strand, within HP15_2968at 3113.674 kb on + strand, within HP15_2968at 3113.705 kb on - strand, within HP15_2968at 3113.939 kb on - strandat 3113.992 kb on + strandat 3114.010 kb on + strandat 3114.097 kb on - strand, within HP15_2969at 3114.214 kb on - strand, within HP15_2969at 3114.276 kb on - strand, within HP15_2969at 3114.280 kb on + strand, within HP15_2969at 3114.392 kb on - strand, within HP15_2969at 3114.479 kb on + strandat 3114.490 kb on + strandat 3114.490 kb on + strandat 3114.498 kb on - strandat 3114.613 kb on + strandat 3114.644 kb on + strandat 3114.645 kb on - strandat 3114.652 kb on - strandat 3114.663 kb on + strand, within HP15_2970at 3114.663 kb on + strand, within HP15_2970at 3114.663 kb on + strand, within HP15_2970at 3114.663 kb on + strand, within HP15_2970at 3114.765 kb on + strand, within HP15_2970at 3114.826 kb on + strand, within HP15_2970at 3114.833 kb on + strand, within HP15_2970at 3114.834 kb on - strand, within HP15_2970at 3114.834 kb on - strand, within HP15_2970at 3114.862 kb on + strand, within HP15_2970at 3114.863 kb on - strand, within HP15_2970at 3114.868 kb on + strand, within HP15_2970at 3114.882 kb on + strand, within HP15_2970at 3114.962 kb on - strand, within HP15_2970at 3115.013 kb on + strand, within HP15_2970at 3115.078 kb on + strand, within HP15_2970at 3115.184 kb on + strandat 3115.192 kb on - strandat 3115.294 kb on - strandat 3115.333 kb on - strand, within HP15_2971at 3115.335 kb on - strand, within HP15_2971at 3115.355 kb on - strand, within HP15_2971at 3115.406 kb on + strand, within HP15_2971at 3115.406 kb on + strand, within HP15_2971at 3115.425 kb on - strand, within HP15_2971at 3115.447 kb on - strand, within HP15_2971at 3115.463 kb on + strand, within HP15_2971at 3115.466 kb on - strand, within HP15_2971

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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3,113,353 + HP15_2968 0.60 +0.7
3,113,402 - HP15_2968 0.63 -0.4
3,113,446 + HP15_2968 0.66 -1.9
3,113,562 + HP15_2968 0.73 +1.4
3,113,617 + HP15_2968 0.76 -0.5
3,113,625 - HP15_2968 0.77 +0.4
3,113,674 + HP15_2968 0.80 +0.8
3,113,705 - HP15_2968 0.82 +2.6
3,113,939 - +0.9
3,113,992 + -1.8
3,114,010 + +0.7
3,114,097 - HP15_2969 0.20 -2.0
3,114,214 - HP15_2969 0.43 -0.1
3,114,276 - HP15_2969 0.55 -1.2
3,114,280 + HP15_2969 0.56 -1.6
3,114,392 - HP15_2969 0.78 -0.6
3,114,479 + +1.0
3,114,490 + -0.2
3,114,490 + -0.3
3,114,498 - -2.0
3,114,613 + -1.3
3,114,644 + -0.1
3,114,645 - -0.6
3,114,652 - +0.2
3,114,663 + HP15_2970 0.12 -2.4
3,114,663 + HP15_2970 0.12 -1.7
3,114,663 + HP15_2970 0.12 +0.6
3,114,663 + HP15_2970 0.12 -0.3
3,114,765 + HP15_2970 0.27 -0.6
3,114,826 + HP15_2970 0.37 +0.1
3,114,833 + HP15_2970 0.38 -0.3
3,114,834 - HP15_2970 0.38 -1.8
3,114,834 - HP15_2970 0.38 -0.6
3,114,862 + HP15_2970 0.42 +1.2
3,114,863 - HP15_2970 0.42 +0.6
3,114,868 + HP15_2970 0.43 +1.3
3,114,882 + HP15_2970 0.45 -2.4
3,114,962 - HP15_2970 0.57 -0.7
3,115,013 + HP15_2970 0.65 -0.6
3,115,078 + HP15_2970 0.75 -1.8
3,115,184 + -0.2
3,115,192 - -1.5
3,115,294 - -1.7
3,115,333 - HP15_2971 0.10 +1.1
3,115,335 - HP15_2971 0.11 -3.2
3,115,355 - HP15_2971 0.13 +1.4
3,115,406 + HP15_2971 0.18 -0.4
3,115,406 + HP15_2971 0.18 +0.0
3,115,425 - HP15_2971 0.20 -0.5
3,115,447 - HP15_2971 0.23 -1.3
3,115,463 + HP15_2971 0.25 -2.4
3,115,466 - HP15_2971 0.25 -0.7

Or see this region's nucleotide sequence