Strain Fitness in Marinobacter adhaerens HP15 around HP15_2710

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2708 and HP15_2709 are separated by 7 nucleotidesHP15_2709 and HP15_2710 overlap by 1 nucleotidesHP15_2710 and HP15_2711 are separated by 112 nucleotidesHP15_2711 and HP15_2712 overlap by 22 nucleotides HP15_2708: HP15_2708 - transcriptional regulator, PaaX family, at 2,861,523 to 2,862,491 _2708 HP15_2709: HP15_2709 - thioesterase family protein, at 2,862,499 to 2,863,008 _2709 HP15_2710: HP15_2710 - L-lactate/malate dehydrogenase, at 2,863,008 to 2,863,931 _2710 HP15_2711: HP15_2711 - conserved hypothetical protein, membrane, at 2,864,044 to 2,864,925 _2711 HP15_2712: HP15_2712 - conserved hypothetical protein, at 2,864,904 to 2,865,197 _2712 Position (kb) 2863 2864Strain fitness (log2 ratio) -3 -2 -1 0 1at 2862.018 kb on + strand, within HP15_2708at 2862.046 kb on + strand, within HP15_2708at 2862.054 kb on + strand, within HP15_2708at 2862.062 kb on - strand, within HP15_2708at 2862.125 kb on + strand, within HP15_2708at 2862.276 kb on + strand, within HP15_2708at 2862.307 kb on + strand, within HP15_2708at 2862.453 kb on + strandat 2862.640 kb on - strand, within HP15_2709at 2862.714 kb on + strand, within HP15_2709at 2862.714 kb on + strand, within HP15_2709at 2863.058 kb on + strandat 2863.066 kb on - strandat 2863.076 kb on - strandat 2863.259 kb on + strand, within HP15_2710at 2863.321 kb on + strand, within HP15_2710at 2863.358 kb on + strand, within HP15_2710at 2863.376 kb on - strand, within HP15_2710at 2863.581 kb on - strand, within HP15_2710at 2863.648 kb on + strand, within HP15_2710at 2863.707 kb on + strand, within HP15_2710at 2863.753 kb on + strand, within HP15_2710at 2863.760 kb on + strand, within HP15_2710at 2863.790 kb on - strand, within HP15_2710at 2863.799 kb on + strand, within HP15_2710at 2863.848 kb on - strandat 2863.947 kb on + strandat 2863.947 kb on + strandat 2863.955 kb on - strandat 2863.955 kb on - strandat 2863.955 kb on - strandat 2863.957 kb on + strandat 2864.024 kb on - strandat 2864.146 kb on - strand, within HP15_2711at 2864.187 kb on + strand, within HP15_2711at 2864.195 kb on - strand, within HP15_2711at 2864.339 kb on + strand, within HP15_2711at 2864.353 kb on + strand, within HP15_2711at 2864.368 kb on - strand, within HP15_2711at 2864.478 kb on + strand, within HP15_2711at 2864.741 kb on + strand, within HP15_2711at 2864.858 kb on + strandat 2864.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,862,018 + HP15_2708 0.51 +0.4
2,862,046 + HP15_2708 0.54 -1.6
2,862,054 + HP15_2708 0.55 -0.7
2,862,062 - HP15_2708 0.56 -0.4
2,862,125 + HP15_2708 0.62 +0.3
2,862,276 + HP15_2708 0.78 +0.0
2,862,307 + HP15_2708 0.81 -0.7
2,862,453 + +0.8
2,862,640 - HP15_2709 0.28 -0.6
2,862,714 + HP15_2709 0.42 +0.6
2,862,714 + HP15_2709 0.42 -0.1
2,863,058 + +0.1
2,863,066 - +0.5
2,863,076 - -0.9
2,863,259 + HP15_2710 0.27 +0.1
2,863,321 + HP15_2710 0.34 -0.2
2,863,358 + HP15_2710 0.38 -0.2
2,863,376 - HP15_2710 0.40 +0.4
2,863,581 - HP15_2710 0.62 +0.2
2,863,648 + HP15_2710 0.69 -0.6
2,863,707 + HP15_2710 0.76 -0.2
2,863,753 + HP15_2710 0.81 +0.3
2,863,760 + HP15_2710 0.81 -0.8
2,863,790 - HP15_2710 0.85 -3.3
2,863,799 + HP15_2710 0.86 -3.4
2,863,848 - +0.4
2,863,947 + -0.2
2,863,947 + -1.0
2,863,955 - -0.2
2,863,955 - +0.4
2,863,955 - -0.0
2,863,957 + +0.4
2,864,024 - -1.3
2,864,146 - HP15_2711 0.12 +0.7
2,864,187 + HP15_2711 0.16 -0.4
2,864,195 - HP15_2711 0.17 -1.5
2,864,339 + HP15_2711 0.33 -0.2
2,864,353 + HP15_2711 0.35 -0.7
2,864,368 - HP15_2711 0.37 +0.2
2,864,478 + HP15_2711 0.49 -0.5
2,864,741 + HP15_2711 0.79 -0.6
2,864,858 + +0.2
2,864,866 - -0.4

Or see this region's nucleotide sequence