Strain Fitness in Marinobacter adhaerens HP15 around HP15_2496

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2495 and HP15_2496 are separated by 174 nucleotidesHP15_2496 and HP15_2497 are separated by 20 nucleotides HP15_2495: HP15_2495 - tRNA synthetase, class II (G, H, P and S), at 2,634,394 to 2,635,575 _2495 HP15_2496: HP15_2496 - HflC, at 2,635,750 to 2,636,607 _2496 HP15_2497: HP15_2497 - HflK, at 2,636,628 to 2,637,815 _2497 Position (kb) 2635 2636 2637Strain fitness (log2 ratio) -3 -2 -1 0 1at 2634.835 kb on - strand, within HP15_2495at 2634.863 kb on - strand, within HP15_2495at 2634.867 kb on - strand, within HP15_2495at 2635.183 kb on - strand, within HP15_2495at 2635.185 kb on - strand, within HP15_2495at 2635.245 kb on - strand, within HP15_2495at 2635.507 kb on - strandat 2635.747 kb on + strandat 2635.755 kb on - strandat 2635.953 kb on + strand, within HP15_2496at 2636.179 kb on + strand, within HP15_2496at 2636.187 kb on - strand, within HP15_2496at 2636.498 kb on - strand, within HP15_2496at 2636.516 kb on + strand, within HP15_2496at 2636.647 kb on + strandat 2636.817 kb on - strand, within HP15_2497at 2637.209 kb on + strand, within HP15_2497at 2637.274 kb on - strand, within HP15_2497at 2637.288 kb on + strand, within HP15_2497at 2637.356 kb on - strand, within HP15_2497at 2637.425 kb on + strand, within HP15_2497at 2637.547 kb on + strand, within HP15_2497

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
2,634,835 - HP15_2495 0.37 +0.2
2,634,863 - HP15_2495 0.40 -1.4
2,634,867 - HP15_2495 0.40 +0.7
2,635,183 - HP15_2495 0.67 +1.1
2,635,185 - HP15_2495 0.67 +0.7
2,635,245 - HP15_2495 0.72 +1.5
2,635,507 - +0.3
2,635,747 + -0.1
2,635,755 - +0.1
2,635,953 + HP15_2496 0.24 -0.7
2,636,179 + HP15_2496 0.50 -3.0
2,636,187 - HP15_2496 0.51 -1.5
2,636,498 - HP15_2496 0.87 -1.7
2,636,516 + HP15_2496 0.89 -0.2
2,636,647 + -0.3
2,636,817 - HP15_2497 0.16 -0.3
2,637,209 + HP15_2497 0.49 -2.3
2,637,274 - HP15_2497 0.54 -0.6
2,637,288 + HP15_2497 0.56 -1.6
2,637,356 - HP15_2497 0.61 -0.6
2,637,425 + HP15_2497 0.67 -2.8
2,637,547 + HP15_2497 0.77 -1.0

Or see this region's nucleotide sequence