Strain Fitness in Marinobacter adhaerens HP15 around HP15_2409

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_2407 and HP15_2408 are separated by 71 nucleotidesHP15_2408 and HP15_2409 are separated by 312 nucleotidesHP15_2409 and HP15_2410 are separated by 2 nucleotides HP15_2407: HP15_2407 - O-antigen ligase-like protein, at 2,541,332 to 2,542,786 _2407 HP15_2408: HP15_2408 - methylation site containing protein, at 2,542,858 to 2,543,268 _2408 HP15_2409: HP15_2409 - ATPase, type IV, pilus assembly, PilB, at 2,543,581 to 2,545,296 _2409 HP15_2410: HP15_2410 - type IV pilus biogenesis protein PilC, at 2,545,299 to 2,546,519 _2410 Position (kb) 2543 2544 2545 2546Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2542.593 kb on + strand, within HP15_2407at 2542.593 kb on + strand, within HP15_2407at 2542.699 kb on + strandat 2542.704 kb on + strandat 2542.720 kb on - strandat 2542.735 kb on - strandat 2542.771 kb on + strandat 2542.771 kb on + strandat 2542.777 kb on - strandat 2542.779 kb on - strandat 2542.900 kb on + strand, within HP15_2408at 2542.996 kb on - strand, within HP15_2408at 2542.996 kb on - strand, within HP15_2408at 2542.996 kb on - strand, within HP15_2408at 2543.035 kb on + strand, within HP15_2408at 2543.109 kb on - strand, within HP15_2408at 2543.303 kb on + strandat 2543.485 kb on - strandat 2543.512 kb on + strandat 2543.565 kb on + strandat 2543.608 kb on - strandat 2543.608 kb on - strandat 2543.652 kb on - strandat 2543.864 kb on - strand, within HP15_2409at 2543.877 kb on - strand, within HP15_2409at 2543.938 kb on - strand, within HP15_2409at 2543.995 kb on - strand, within HP15_2409at 2543.995 kb on - strand, within HP15_2409at 2544.063 kb on + strand, within HP15_2409at 2544.071 kb on + strand, within HP15_2409at 2544.071 kb on - strand, within HP15_2409at 2544.120 kb on - strand, within HP15_2409at 2544.150 kb on - strand, within HP15_2409at 2544.338 kb on - strand, within HP15_2409at 2544.345 kb on + strand, within HP15_2409at 2544.355 kb on - strand, within HP15_2409at 2544.357 kb on + strand, within HP15_2409at 2544.424 kb on + strand, within HP15_2409at 2544.543 kb on + strand, within HP15_2409at 2544.610 kb on - strand, within HP15_2409at 2544.616 kb on + strand, within HP15_2409at 2544.618 kb on + strand, within HP15_2409at 2544.658 kb on - strand, within HP15_2409at 2544.673 kb on - strand, within HP15_2409at 2544.756 kb on - strand, within HP15_2409at 2544.841 kb on - strand, within HP15_2409at 2544.850 kb on + strand, within HP15_2409at 2544.853 kb on - strand, within HP15_2409at 2544.956 kb on - strand, within HP15_2409at 2544.971 kb on - strand, within HP15_2409at 2545.072 kb on - strand, within HP15_2409at 2545.072 kb on - strand, within HP15_2409at 2545.098 kb on - strand, within HP15_2409at 2545.290 kb on + strandat 2545.298 kb on - strandat 2545.298 kb on - strandat 2545.298 kb on - strandat 2545.298 kb on - strandat 2545.390 kb on + strandat 2545.431 kb on + strand, within HP15_2410at 2545.540 kb on - strand, within HP15_2410at 2545.540 kb on - strand, within HP15_2410at 2545.702 kb on - strand, within HP15_2410at 2545.753 kb on + strand, within HP15_2410at 2545.790 kb on + strand, within HP15_2410at 2545.938 kb on + strand, within HP15_2410at 2546.027 kb on + strand, within HP15_2410at 2546.050 kb on - strand, within HP15_2410at 2546.216 kb on - strand, within HP15_2410at 2546.239 kb on - strand, within HP15_2410at 2546.262 kb on - strand, within HP15_2410

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
2,542,593 + HP15_2407 0.87 +0.9
2,542,593 + HP15_2407 0.87 +1.2
2,542,699 + +0.7
2,542,704 + -0.7
2,542,720 - -1.7
2,542,735 - -0.9
2,542,771 + +1.5
2,542,771 + -1.2
2,542,777 - +0.9
2,542,779 - +1.2
2,542,900 + HP15_2408 0.10 +3.2
2,542,996 - HP15_2408 0.34 +1.8
2,542,996 - HP15_2408 0.34 +3.3
2,542,996 - HP15_2408 0.34 +2.5
2,543,035 + HP15_2408 0.43 +0.9
2,543,109 - HP15_2408 0.61 +1.0
2,543,303 + -2.2
2,543,485 - -1.1
2,543,512 + -0.5
2,543,565 + -1.8
2,543,608 - +2.0
2,543,608 - +0.4
2,543,652 - -0.1
2,543,864 - HP15_2409 0.16 +1.5
2,543,877 - HP15_2409 0.17 +0.5
2,543,938 - HP15_2409 0.21 +0.6
2,543,995 - HP15_2409 0.24 -2.2
2,543,995 - HP15_2409 0.24 +1.0
2,544,063 + HP15_2409 0.28 -0.7
2,544,071 + HP15_2409 0.29 +0.3
2,544,071 - HP15_2409 0.29 -1.2
2,544,120 - HP15_2409 0.31 -0.1
2,544,150 - HP15_2409 0.33 -0.1
2,544,338 - HP15_2409 0.44 +1.1
2,544,345 + HP15_2409 0.45 +0.9
2,544,355 - HP15_2409 0.45 +1.0
2,544,357 + HP15_2409 0.45 +0.2
2,544,424 + HP15_2409 0.49 -0.7
2,544,543 + HP15_2409 0.56 -1.2
2,544,610 - HP15_2409 0.60 -0.0
2,544,616 + HP15_2409 0.60 +1.6
2,544,618 + HP15_2409 0.60 +0.1
2,544,658 - HP15_2409 0.63 +0.3
2,544,673 - HP15_2409 0.64 -0.2
2,544,756 - HP15_2409 0.68 +0.8
2,544,841 - HP15_2409 0.73 +0.5
2,544,850 + HP15_2409 0.74 +0.1
2,544,853 - HP15_2409 0.74 +0.4
2,544,956 - HP15_2409 0.80 -0.1
2,544,971 - HP15_2409 0.81 +2.0
2,545,072 - HP15_2409 0.87 +0.1
2,545,072 - HP15_2409 0.87 +0.4
2,545,098 - HP15_2409 0.88 +0.5
2,545,290 + +0.3
2,545,298 - -0.7
2,545,298 - -0.3
2,545,298 - +0.8
2,545,298 - -0.6
2,545,390 + -1.0
2,545,431 + HP15_2410 0.11 +0.0
2,545,540 - HP15_2410 0.20 +0.1
2,545,540 - HP15_2410 0.20 -1.9
2,545,702 - HP15_2410 0.33 +1.0
2,545,753 + HP15_2410 0.37 -1.5
2,545,790 + HP15_2410 0.40 +0.8
2,545,938 + HP15_2410 0.52 -2.2
2,546,027 + HP15_2410 0.60 -0.2
2,546,050 - HP15_2410 0.62 -1.8
2,546,216 - HP15_2410 0.75 -1.8
2,546,239 - HP15_2410 0.77 +0.5
2,546,262 - HP15_2410 0.79 -0.2

Or see this region's nucleotide sequence