Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2407 and HP15_2408 are separated by 71 nucleotides HP15_2408 and HP15_2409 are separated by 312 nucleotides HP15_2409 and HP15_2410 are separated by 2 nucleotides
HP15_2407: HP15_2407 - O-antigen ligase-like protein, at 2,541,332 to 2,542,786
_2407
HP15_2408: HP15_2408 - methylation site containing protein, at 2,542,858 to 2,543,268
_2408
HP15_2409: HP15_2409 - ATPase, type IV, pilus assembly, PilB, at 2,543,581 to 2,545,296
_2409
HP15_2410: HP15_2410 - type IV pilus biogenesis protein PilC, at 2,545,299 to 2,546,519
_2410
Position (kb)
2543
2544
2545
2546 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2542.593 kb on + strand, within HP15_2407 at 2542.593 kb on + strand, within HP15_2407 at 2542.699 kb on + strand at 2542.704 kb on + strand at 2542.720 kb on - strand at 2542.735 kb on - strand at 2542.771 kb on + strand at 2542.771 kb on + strand at 2542.777 kb on - strand at 2542.779 kb on - strand at 2542.900 kb on + strand, within HP15_2408 at 2542.996 kb on - strand, within HP15_2408 at 2542.996 kb on - strand, within HP15_2408 at 2542.996 kb on - strand, within HP15_2408 at 2543.035 kb on + strand, within HP15_2408 at 2543.109 kb on - strand, within HP15_2408 at 2543.303 kb on + strand at 2543.485 kb on - strand at 2543.512 kb on + strand at 2543.565 kb on + strand at 2543.608 kb on - strand at 2543.608 kb on - strand at 2543.652 kb on - strand at 2543.864 kb on - strand, within HP15_2409 at 2543.877 kb on - strand, within HP15_2409 at 2543.938 kb on - strand, within HP15_2409 at 2543.995 kb on - strand, within HP15_2409 at 2543.995 kb on - strand, within HP15_2409 at 2544.063 kb on + strand, within HP15_2409 at 2544.071 kb on + strand, within HP15_2409 at 2544.071 kb on - strand, within HP15_2409 at 2544.120 kb on - strand, within HP15_2409 at 2544.150 kb on - strand, within HP15_2409 at 2544.338 kb on - strand, within HP15_2409 at 2544.345 kb on + strand, within HP15_2409 at 2544.355 kb on - strand, within HP15_2409 at 2544.357 kb on + strand, within HP15_2409 at 2544.424 kb on + strand, within HP15_2409 at 2544.543 kb on + strand, within HP15_2409 at 2544.610 kb on - strand, within HP15_2409 at 2544.616 kb on + strand, within HP15_2409 at 2544.618 kb on + strand, within HP15_2409 at 2544.658 kb on - strand, within HP15_2409 at 2544.673 kb on - strand, within HP15_2409 at 2544.756 kb on - strand, within HP15_2409 at 2544.841 kb on - strand, within HP15_2409 at 2544.850 kb on + strand, within HP15_2409 at 2544.853 kb on - strand, within HP15_2409 at 2544.956 kb on - strand, within HP15_2409 at 2544.971 kb on - strand, within HP15_2409 at 2545.072 kb on - strand, within HP15_2409 at 2545.072 kb on - strand, within HP15_2409 at 2545.098 kb on - strand, within HP15_2409 at 2545.290 kb on + strand at 2545.298 kb on - strand at 2545.298 kb on - strand at 2545.298 kb on - strand at 2545.298 kb on - strand at 2545.390 kb on + strand at 2545.431 kb on + strand, within HP15_2410 at 2545.540 kb on - strand, within HP15_2410 at 2545.540 kb on - strand, within HP15_2410 at 2545.702 kb on - strand, within HP15_2410 at 2545.753 kb on + strand, within HP15_2410 at 2545.790 kb on + strand, within HP15_2410 at 2545.938 kb on + strand, within HP15_2410 at 2546.027 kb on + strand, within HP15_2410 at 2546.050 kb on - strand, within HP15_2410 at 2546.216 kb on - strand, within HP15_2410 at 2546.239 kb on - strand, within HP15_2410 at 2546.262 kb on - strand, within HP15_2410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 2,542,593 + HP15_2407 0.87 +0.9 2,542,593 + HP15_2407 0.87 +1.2 2,542,699 + +0.7 2,542,704 + -0.7 2,542,720 - -1.7 2,542,735 - -0.9 2,542,771 + +1.5 2,542,771 + -1.2 2,542,777 - +0.9 2,542,779 - +1.2 2,542,900 + HP15_2408 0.10 +3.2 2,542,996 - HP15_2408 0.34 +1.8 2,542,996 - HP15_2408 0.34 +3.3 2,542,996 - HP15_2408 0.34 +2.5 2,543,035 + HP15_2408 0.43 +0.9 2,543,109 - HP15_2408 0.61 +1.0 2,543,303 + -2.2 2,543,485 - -1.1 2,543,512 + -0.5 2,543,565 + -1.8 2,543,608 - +2.0 2,543,608 - +0.4 2,543,652 - -0.1 2,543,864 - HP15_2409 0.16 +1.5 2,543,877 - HP15_2409 0.17 +0.5 2,543,938 - HP15_2409 0.21 +0.6 2,543,995 - HP15_2409 0.24 -2.2 2,543,995 - HP15_2409 0.24 +1.0 2,544,063 + HP15_2409 0.28 -0.7 2,544,071 + HP15_2409 0.29 +0.3 2,544,071 - HP15_2409 0.29 -1.2 2,544,120 - HP15_2409 0.31 -0.1 2,544,150 - HP15_2409 0.33 -0.1 2,544,338 - HP15_2409 0.44 +1.1 2,544,345 + HP15_2409 0.45 +0.9 2,544,355 - HP15_2409 0.45 +1.0 2,544,357 + HP15_2409 0.45 +0.2 2,544,424 + HP15_2409 0.49 -0.7 2,544,543 + HP15_2409 0.56 -1.2 2,544,610 - HP15_2409 0.60 -0.0 2,544,616 + HP15_2409 0.60 +1.6 2,544,618 + HP15_2409 0.60 +0.1 2,544,658 - HP15_2409 0.63 +0.3 2,544,673 - HP15_2409 0.64 -0.2 2,544,756 - HP15_2409 0.68 +0.8 2,544,841 - HP15_2409 0.73 +0.5 2,544,850 + HP15_2409 0.74 +0.1 2,544,853 - HP15_2409 0.74 +0.4 2,544,956 - HP15_2409 0.80 -0.1 2,544,971 - HP15_2409 0.81 +2.0 2,545,072 - HP15_2409 0.87 +0.1 2,545,072 - HP15_2409 0.87 +0.4 2,545,098 - HP15_2409 0.88 +0.5 2,545,290 + +0.3 2,545,298 - -0.7 2,545,298 - -0.3 2,545,298 - +0.8 2,545,298 - -0.6 2,545,390 + -1.0 2,545,431 + HP15_2410 0.11 +0.0 2,545,540 - HP15_2410 0.20 +0.1 2,545,540 - HP15_2410 0.20 -1.9 2,545,702 - HP15_2410 0.33 +1.0 2,545,753 + HP15_2410 0.37 -1.5 2,545,790 + HP15_2410 0.40 +0.8 2,545,938 + HP15_2410 0.52 -2.2 2,546,027 + HP15_2410 0.60 -0.2 2,546,050 - HP15_2410 0.62 -1.8 2,546,216 - HP15_2410 0.75 -1.8 2,546,239 - HP15_2410 0.77 +0.5 2,546,262 - HP15_2410 0.79 -0.2
Or see this region's nucleotide sequence