Strain Fitness in Marinobacter adhaerens HP15 around HP15_2243

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2241 and HP15_2242 are separated by 42 nucleotidesHP15_2242 and HP15_2243 are separated by 11 nucleotidesHP15_2243 and HP15_2244 overlap by 4 nucleotidesHP15_2244 and HP15_2245 are separated by 58 nucleotides HP15_2241: HP15_2241 - transaldolase, at 2,362,342 to 2,363,307 _2241 HP15_2242: HP15_2242 - protein containing DUF1332, at 2,363,350 to 2,363,799 _2242 HP15_2243: HP15_2243 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,363,811 to 2,364,938 _2243 HP15_2244: HP15_2244 - glycerophosphoryl diester phosphodiesterase, at 2,364,935 to 2,365,741 _2244 HP15_2245: HP15_2245 - soluble pyridine nucleotide transhydrogenase, at 2,365,800 to 2,367,191 _2245 Position (kb) 2363 2364 2365Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2362.848 kb on + strand, within HP15_2241at 2362.864 kb on + strand, within HP15_2241at 2362.910 kb on - strand, within HP15_2241at 2363.075 kb on + strand, within HP15_2241at 2363.075 kb on + strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.083 kb on - strand, within HP15_2241at 2363.094 kb on - strand, within HP15_2241at 2363.179 kb on + strand, within HP15_2241at 2363.227 kb on - strandat 2363.247 kb on + strandat 2363.292 kb on + strandat 2363.322 kb on - strandat 2363.404 kb on + strand, within HP15_2242at 2363.469 kb on + strand, within HP15_2242at 2363.525 kb on + strand, within HP15_2242at 2363.572 kb on - strand, within HP15_2242at 2363.843 kb on + strandat 2363.916 kb on + strandat 2363.928 kb on + strand, within HP15_2243at 2363.929 kb on + strand, within HP15_2243at 2364.094 kb on - strand, within HP15_2243at 2364.137 kb on + strand, within HP15_2243at 2364.239 kb on + strand, within HP15_2243at 2364.469 kb on + strand, within HP15_2243at 2364.667 kb on + strand, within HP15_2243at 2364.736 kb on + strand, within HP15_2243at 2364.819 kb on + strand, within HP15_2243at 2364.871 kb on - strandat 2365.025 kb on - strand, within HP15_2244at 2365.081 kb on - strand, within HP15_2244at 2365.126 kb on + strand, within HP15_2244at 2365.126 kb on + strand, within HP15_2244at 2365.667 kb on - strandat 2365.760 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,362,848 + HP15_2241 0.52 +1.1
2,362,864 + HP15_2241 0.54 +0.9
2,362,910 - HP15_2241 0.59 +0.5
2,363,075 + HP15_2241 0.76 -1.2
2,363,075 + HP15_2241 0.76 -0.0
2,363,083 - HP15_2241 0.77 -0.1
2,363,083 - HP15_2241 0.77 +1.3
2,363,083 - HP15_2241 0.77 +0.9
2,363,083 - HP15_2241 0.77 +1.0
2,363,094 - HP15_2241 0.78 +1.4
2,363,179 + HP15_2241 0.87 +0.7
2,363,227 - +3.2
2,363,247 + +1.4
2,363,292 + +0.0
2,363,322 - +0.1
2,363,404 + HP15_2242 0.12 -0.6
2,363,469 + HP15_2242 0.26 +0.0
2,363,525 + HP15_2242 0.39 -1.3
2,363,572 - HP15_2242 0.49 +1.9
2,363,843 + +1.0
2,363,916 + -0.0
2,363,928 + HP15_2243 0.10 +0.7
2,363,929 + HP15_2243 0.10 +1.5
2,364,094 - HP15_2243 0.25 -0.0
2,364,137 + HP15_2243 0.29 +0.5
2,364,239 + HP15_2243 0.38 +0.1
2,364,469 + HP15_2243 0.58 +1.5
2,364,667 + HP15_2243 0.76 -0.5
2,364,736 + HP15_2243 0.82 -0.8
2,364,819 + HP15_2243 0.89 +1.2
2,364,871 - -0.4
2,365,025 - HP15_2244 0.11 -1.4
2,365,081 - HP15_2244 0.18 +0.6
2,365,126 + HP15_2244 0.24 -2.6
2,365,126 + HP15_2244 0.24 +1.0
2,365,667 - +0.4
2,365,760 + +0.4

Or see this region's nucleotide sequence