Strain Fitness in Marinobacter adhaerens HP15 around HP15_216

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_215 and HP15_216 are separated by 49 nucleotidesHP15_216 and HP15_217 are separated by 66 nucleotides HP15_215: HP15_215 - sensory box/GGDEF family protein, at 201,518 to 203,254 _215 HP15_216: HP15_216 - DNA damage response protein (yhgF like) (from data), at 203,304 to 205,643 _216 HP15_217: HP15_217 - glutamate--cysteine ligase, at 205,710 to 207,263 _217 Position (kb) 203 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 202.304 kb on + strand, within HP15_215at 202.304 kb on + strand, within HP15_215at 202.312 kb on - strand, within HP15_215at 202.312 kb on - strand, within HP15_215at 202.317 kb on - strand, within HP15_215at 202.531 kb on + strand, within HP15_215at 202.658 kb on - strand, within HP15_215at 202.668 kb on + strand, within HP15_215at 202.832 kb on - strand, within HP15_215at 202.839 kb on + strand, within HP15_215at 202.880 kb on - strand, within HP15_215at 203.001 kb on - strand, within HP15_215at 203.034 kb on - strand, within HP15_215at 203.074 kb on + strand, within HP15_215at 203.084 kb on + strandat 203.186 kb on + strandat 203.248 kb on + strandat 203.286 kb on + strandat 203.358 kb on - strandat 203.365 kb on - strandat 203.386 kb on - strandat 203.409 kb on + strandat 203.416 kb on + strandat 203.434 kb on - strandat 203.499 kb on - strandat 203.517 kb on - strandat 203.545 kb on + strand, within HP15_216at 203.555 kb on + strand, within HP15_216at 203.602 kb on + strand, within HP15_216at 203.615 kb on + strand, within HP15_216at 203.709 kb on + strand, within HP15_216at 203.729 kb on - strand, within HP15_216at 203.734 kb on - strand, within HP15_216at 203.949 kb on + strand, within HP15_216at 203.959 kb on + strand, within HP15_216at 203.983 kb on + strand, within HP15_216at 204.050 kb on + strand, within HP15_216at 204.247 kb on - strand, within HP15_216at 204.254 kb on + strand, within HP15_216at 204.257 kb on - strand, within HP15_216at 204.271 kb on + strand, within HP15_216at 204.285 kb on - strand, within HP15_216at 204.303 kb on - strand, within HP15_216at 204.337 kb on + strand, within HP15_216at 204.342 kb on + strand, within HP15_216at 204.361 kb on + strand, within HP15_216at 204.512 kb on + strand, within HP15_216at 204.554 kb on + strand, within HP15_216at 204.615 kb on - strand, within HP15_216at 204.700 kb on + strand, within HP15_216at 204.700 kb on + strand, within HP15_216at 204.700 kb on + strand, within HP15_216at 204.708 kb on - strand, within HP15_216at 204.749 kb on + strand, within HP15_216at 204.792 kb on + strand, within HP15_216at 204.795 kb on - strand, within HP15_216at 204.827 kb on + strand, within HP15_216at 204.911 kb on + strand, within HP15_216at 205.107 kb on - strand, within HP15_216at 205.205 kb on - strand, within HP15_216at 205.234 kb on - strand, within HP15_216at 205.236 kb on - strand, within HP15_216at 205.352 kb on + strand, within HP15_216at 205.360 kb on - strand, within HP15_216at 205.360 kb on - strand, within HP15_216at 205.361 kb on - strand, within HP15_216at 205.375 kb on + strand, within HP15_216at 205.409 kb on + strand, within HP15_216at 205.417 kb on - strandat 205.615 kb on - strandat 205.639 kb on + strandat 205.656 kb on + strandat 205.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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202,304 + HP15_215 0.45 +0.2
202,304 + HP15_215 0.45 -0.6
202,312 - HP15_215 0.46 -0.2
202,312 - HP15_215 0.46 -2.9
202,317 - HP15_215 0.46 +0.3
202,531 + HP15_215 0.58 -1.1
202,658 - HP15_215 0.66 +0.3
202,668 + HP15_215 0.66 +0.2
202,832 - HP15_215 0.76 -0.0
202,839 + HP15_215 0.76 -0.3
202,880 - HP15_215 0.78 -0.6
203,001 - HP15_215 0.85 +0.1
203,034 - HP15_215 0.87 +0.4
203,074 + HP15_215 0.90 -1.9
203,084 + -0.6
203,186 + -0.2
203,248 + -1.0
203,286 + -1.7
203,358 - -3.1
203,365 - -1.0
203,386 - +0.4
203,409 + -3.0
203,416 + +0.1
203,434 - -1.2
203,499 - -0.6
203,517 - +0.4
203,545 + HP15_216 0.10 +0.4
203,555 + HP15_216 0.11 +0.2
203,602 + HP15_216 0.13 -0.0
203,615 + HP15_216 0.13 -0.0
203,709 + HP15_216 0.17 +0.1
203,729 - HP15_216 0.18 +0.2
203,734 - HP15_216 0.18 -0.4
203,949 + HP15_216 0.28 +2.1
203,959 + HP15_216 0.28 -0.2
203,983 + HP15_216 0.29 +0.2
204,050 + HP15_216 0.32 -0.5
204,247 - HP15_216 0.40 -0.4
204,254 + HP15_216 0.41 +0.0
204,257 - HP15_216 0.41 -1.5
204,271 + HP15_216 0.41 -1.2
204,285 - HP15_216 0.42 -0.4
204,303 - HP15_216 0.43 -1.8
204,337 + HP15_216 0.44 +0.5
204,342 + HP15_216 0.44 +0.3
204,361 + HP15_216 0.45 -1.9
204,512 + HP15_216 0.52 -0.3
204,554 + HP15_216 0.53 -1.0
204,615 - HP15_216 0.56 -0.2
204,700 + HP15_216 0.60 -0.8
204,700 + HP15_216 0.60 -1.7
204,700 + HP15_216 0.60 -3.4
204,708 - HP15_216 0.60 -0.8
204,749 + HP15_216 0.62 +0.0
204,792 + HP15_216 0.64 -0.2
204,795 - HP15_216 0.64 -0.1
204,827 + HP15_216 0.65 -0.6
204,911 + HP15_216 0.69 -0.5
205,107 - HP15_216 0.77 -0.0
205,205 - HP15_216 0.81 -2.4
205,234 - HP15_216 0.82 -0.1
205,236 - HP15_216 0.83 -1.1
205,352 + HP15_216 0.88 -0.7
205,360 - HP15_216 0.88 -0.2
205,360 - HP15_216 0.88 -1.8
205,361 - HP15_216 0.88 -0.4
205,375 + HP15_216 0.89 +1.8
205,409 + HP15_216 0.90 -3.5
205,417 - +0.4
205,615 - -0.6
205,639 + -0.3
205,656 + -1.9
205,721 - +1.4

Or see this region's nucleotide sequence