Strain Fitness in Marinobacter adhaerens HP15 around HP15_205

Experiment: m.b. Zinc 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_204 and HP15_205 are separated by 75 nucleotidesHP15_205 and HP15_206 overlap by 14 nucleotides HP15_204: HP15_204 - oligopeptide/dipeptide ABC transporter, ATPase subunit, at 191,528 to 192,538 _204 HP15_205: HP15_205 - protein containing bacterial regulatory protein, LysR domain, at 192,614 to 193,528 _205 HP15_206: HP15_206 - Xaa-Pro dipeptidase, at 193,515 to 194,837 _206 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1 2 3at 191.689 kb on - strand, within HP15_204at 191.690 kb on - strand, within HP15_204at 191.695 kb on - strand, within HP15_204at 191.804 kb on - strand, within HP15_204at 191.809 kb on + strand, within HP15_204at 191.851 kb on - strand, within HP15_204at 191.879 kb on - strand, within HP15_204at 191.897 kb on - strand, within HP15_204at 191.901 kb on + strand, within HP15_204at 191.909 kb on - strand, within HP15_204at 191.953 kb on - strand, within HP15_204at 191.993 kb on + strand, within HP15_204at 191.993 kb on + strand, within HP15_204at 191.998 kb on + strand, within HP15_204at 192.001 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.006 kb on - strand, within HP15_204at 192.067 kb on - strand, within HP15_204at 192.140 kb on - strand, within HP15_204at 192.250 kb on - strand, within HP15_204at 192.325 kb on + strand, within HP15_204at 192.362 kb on + strand, within HP15_204at 192.370 kb on - strand, within HP15_204at 192.563 kb on - strandat 192.599 kb on + strandat 192.649 kb on + strandat 192.649 kb on + strandat 192.649 kb on + strandat 192.657 kb on - strandat 192.657 kb on - strandat 192.745 kb on - strand, within HP15_205at 193.027 kb on - strand, within HP15_205at 193.080 kb on - strand, within HP15_205at 193.100 kb on + strand, within HP15_205at 193.144 kb on - strand, within HP15_205at 193.191 kb on + strand, within HP15_205at 193.213 kb on - strand, within HP15_205at 193.305 kb on + strand, within HP15_205at 193.340 kb on + strand, within HP15_205at 193.340 kb on + strand, within HP15_205at 193.348 kb on - strand, within HP15_205at 193.380 kb on - strand, within HP15_205at 193.416 kb on - strand, within HP15_205at 193.459 kb on - strandat 193.496 kb on - strandat 193.654 kb on - strand, within HP15_206at 193.681 kb on + strand, within HP15_206at 193.697 kb on + strand, within HP15_206at 193.700 kb on - strand, within HP15_206at 193.705 kb on - strand, within HP15_206at 193.710 kb on - strand, within HP15_206at 193.759 kb on - strand, within HP15_206at 193.891 kb on + strand, within HP15_206at 193.899 kb on - strand, within HP15_206at 193.975 kb on + strand, within HP15_206at 193.975 kb on + strand, within HP15_206at 194.011 kb on + strand, within HP15_206at 194.019 kb on - strand, within HP15_206at 194.019 kb on - strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.021 kb on + strand, within HP15_206at 194.029 kb on - strand, within HP15_206at 194.029 kb on - strand, within HP15_206at 194.029 kb on - strand, within HP15_206at 194.105 kb on - strand, within HP15_206at 194.182 kb on - strand, within HP15_206at 194.203 kb on - strand, within HP15_206at 194.295 kb on + strand, within HP15_206at 194.304 kb on - strand, within HP15_206at 194.304 kb on - strand, within HP15_206at 194.348 kb on + strand, within HP15_206at 194.348 kb on + strand, within HP15_206at 194.356 kb on - strand, within HP15_206at 194.357 kb on - strand, within HP15_206at 194.379 kb on - strand, within HP15_206at 194.522 kb on + strand, within HP15_206

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
remove
191,689 - HP15_204 0.16 +1.0
191,690 - HP15_204 0.16 +1.3
191,695 - HP15_204 0.17 +1.5
191,804 - HP15_204 0.27 +2.2
191,809 + HP15_204 0.28 +1.5
191,851 - HP15_204 0.32 -0.8
191,879 - HP15_204 0.35 +1.5
191,897 - HP15_204 0.36 +1.3
191,901 + HP15_204 0.37 -0.4
191,909 - HP15_204 0.38 -0.9
191,953 - HP15_204 0.42 +1.3
191,993 + HP15_204 0.46 -0.8
191,993 + HP15_204 0.46 +1.6
191,998 + HP15_204 0.46 +1.2
192,001 - HP15_204 0.47 +0.8
192,006 - HP15_204 0.47 -1.4
192,006 - HP15_204 0.47 +0.5
192,006 - HP15_204 0.47 -0.0
192,067 - HP15_204 0.53 +1.2
192,140 - HP15_204 0.61 +3.2
192,250 - HP15_204 0.71 +1.3
192,325 + HP15_204 0.79 +0.9
192,362 + HP15_204 0.82 +1.6
192,370 - HP15_204 0.83 -0.6
192,563 - +0.1
192,599 + +0.1
192,649 + +1.4
192,649 + +1.2
192,649 + +1.3
192,657 - +0.7
192,657 - +1.4
192,745 - HP15_205 0.14 -0.9
193,027 - HP15_205 0.45 +1.6
193,080 - HP15_205 0.51 +1.5
193,100 + HP15_205 0.53 +1.6
193,144 - HP15_205 0.58 -1.9
193,191 + HP15_205 0.63 +1.5
193,213 - HP15_205 0.65 +1.3
193,305 + HP15_205 0.76 +1.7
193,340 + HP15_205 0.79 +1.8
193,340 + HP15_205 0.79 +1.5
193,348 - HP15_205 0.80 +1.3
193,380 - HP15_205 0.84 +2.5
193,416 - HP15_205 0.88 +2.4
193,459 - +1.4
193,496 - +1.7
193,654 - HP15_206 0.11 -0.8
193,681 + HP15_206 0.13 -1.9
193,697 + HP15_206 0.14 +1.2
193,700 - HP15_206 0.14 -0.3
193,705 - HP15_206 0.14 -1.8
193,710 - HP15_206 0.15 +0.8
193,759 - HP15_206 0.18 +0.8
193,891 + HP15_206 0.28 +1.5
193,899 - HP15_206 0.29 +0.1
193,975 + HP15_206 0.35 -0.8
193,975 + HP15_206 0.35 -1.7
194,011 + HP15_206 0.37 -0.1
194,019 - HP15_206 0.38 +1.5
194,019 - HP15_206 0.38 -1.2
194,021 + HP15_206 0.38 +0.3
194,021 + HP15_206 0.38 +1.2
194,021 + HP15_206 0.38 +0.3
194,021 + HP15_206 0.38 -0.2
194,029 - HP15_206 0.39 +1.4
194,029 - HP15_206 0.39 +1.3
194,029 - HP15_206 0.39 +2.0
194,105 - HP15_206 0.45 -0.0
194,182 - HP15_206 0.50 +0.8
194,203 - HP15_206 0.52 -1.0
194,295 + HP15_206 0.59 +0.2
194,304 - HP15_206 0.60 -1.7
194,304 - HP15_206 0.60 +0.3
194,348 + HP15_206 0.63 +0.3
194,348 + HP15_206 0.63 -1.6
194,356 - HP15_206 0.64 +0.9
194,357 - HP15_206 0.64 -0.8
194,379 - HP15_206 0.65 -0.9
194,522 + HP15_206 0.76 +0.7

Or see this region's nucleotide sequence