Strain Fitness in Marinobacter adhaerens HP15 around HP15_1646

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1644 and HP15_1645 are separated by 5 nucleotidesHP15_1645 and HP15_1646 overlap by 14 nucleotidesHP15_1646 and HP15_1647 are separated by 12 nucleotidesHP15_1647 and HP15_1648 are separated by 51 nucleotidesHP15_1648 and HP15_1649 are separated by 84 nucleotides HP15_1644: HP15_1644 - signal peptide protein-like protein, at 1,742,675 to 1,742,974 _1644 HP15_1645: HP15_1645 - UPF0276 protein containing DUF692, at 1,742,980 to 1,743,891 _1645 HP15_1646: HP15_1646 - conserved hypothetical protein, at 1,743,878 to 1,744,627 _1646 HP15_1647: HP15_1647 - DoxX, at 1,744,640 to 1,745,095 _1647 HP15_1648: HP15_1648 - protein containing thioredoxin domain, at 1,745,147 to 1,745,542 _1648 HP15_1649: HP15_1649 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,745,627 to 1,747,027 _1649 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -3 -2 -1 0 1at 1743.045 kb on + strandat 1743.053 kb on - strandat 1743.213 kb on - strand, within HP15_1645at 1743.214 kb on - strand, within HP15_1645at 1743.267 kb on - strand, within HP15_1645at 1743.269 kb on + strand, within HP15_1645at 1743.287 kb on + strand, within HP15_1645at 1743.406 kb on - strand, within HP15_1645at 1743.447 kb on + strand, within HP15_1645at 1743.530 kb on + strand, within HP15_1645at 1743.827 kb on - strandat 1743.834 kb on + strandat 1743.844 kb on + strandat 1743.856 kb on + strandat 1743.866 kb on - strandat 1743.875 kb on + strandat 1743.936 kb on + strandat 1743.959 kb on - strand, within HP15_1646at 1744.131 kb on + strand, within HP15_1646at 1744.139 kb on - strand, within HP15_1646at 1744.192 kb on + strand, within HP15_1646at 1744.222 kb on + strand, within HP15_1646at 1744.325 kb on - strand, within HP15_1646at 1744.364 kb on + strand, within HP15_1646at 1744.380 kb on + strand, within HP15_1646at 1744.388 kb on - strand, within HP15_1646at 1744.413 kb on + strand, within HP15_1646at 1744.829 kb on - strand, within HP15_1647at 1745.040 kb on + strand, within HP15_1647at 1745.040 kb on + strand, within HP15_1647at 1745.090 kb on + strandat 1745.090 kb on + strandat 1745.104 kb on + strandat 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.292 kb on + strand, within HP15_1648at 1745.297 kb on + strand, within HP15_1648at 1745.300 kb on - strand, within HP15_1648at 1745.300 kb on - strand, within HP15_1648at 1745.362 kb on + strand, within HP15_1648at 1745.367 kb on + strand, within HP15_1648at 1745.419 kb on - strand, within HP15_1648at 1745.489 kb on + strand, within HP15_1648at 1745.626 kb on - strandat 1745.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,743,045 + -0.1
1,743,053 - +1.4
1,743,213 - HP15_1645 0.26 +0.6
1,743,214 - HP15_1645 0.26 -0.3
1,743,267 - HP15_1645 0.31 +0.4
1,743,269 + HP15_1645 0.32 +0.7
1,743,287 + HP15_1645 0.34 -0.5
1,743,406 - HP15_1645 0.47 -1.3
1,743,447 + HP15_1645 0.51 +0.5
1,743,530 + HP15_1645 0.60 +0.4
1,743,827 - +0.2
1,743,834 + -0.5
1,743,844 + -0.1
1,743,856 + -0.2
1,743,866 - +0.9
1,743,875 + -1.0
1,743,936 + -0.7
1,743,959 - HP15_1646 0.11 -0.8
1,744,131 + HP15_1646 0.34 -3.1
1,744,139 - HP15_1646 0.35 -0.3
1,744,192 + HP15_1646 0.42 -0.2
1,744,222 + HP15_1646 0.46 -2.1
1,744,325 - HP15_1646 0.60 -0.5
1,744,364 + HP15_1646 0.65 -0.9
1,744,380 + HP15_1646 0.67 +0.5
1,744,388 - HP15_1646 0.68 -0.0
1,744,413 + HP15_1646 0.71 +0.0
1,744,829 - HP15_1647 0.41 -0.2
1,745,040 + HP15_1647 0.88 +0.3
1,745,040 + HP15_1647 0.88 +0.8
1,745,090 + -2.0
1,745,090 + -1.1
1,745,104 + -2.8
1,745,292 + HP15_1648 0.37 +0.6
1,745,292 + HP15_1648 0.37 +0.3
1,745,292 + HP15_1648 0.37 +0.2
1,745,292 + HP15_1648 0.37 +0.2
1,745,292 + HP15_1648 0.37 -1.8
1,745,297 + HP15_1648 0.38 -0.9
1,745,300 - HP15_1648 0.39 +0.1
1,745,300 - HP15_1648 0.39 +0.9
1,745,362 + HP15_1648 0.54 +0.4
1,745,367 + HP15_1648 0.56 +1.0
1,745,419 - HP15_1648 0.69 +0.9
1,745,489 + HP15_1648 0.86 -1.1
1,745,626 - +0.2
1,745,626 - -2.3

Or see this region's nucleotide sequence