Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1263 and HP15_1264 are separated by 7 nucleotides HP15_1264 and HP15_1265 are separated by 47 nucleotides HP15_1265 and HP15_1266 are separated by 57 nucleotides
HP15_1263: HP15_1263 - conserved hypothetical protein, at 1,322,339 to 1,323,394
_1263
HP15_1264: HP15_1264 - type IV-A pilus assembly ATPase PilB, at 1,323,402 to 1,325,192
_1264
HP15_1265: HP15_1265 - conserved hypothetical protein, membrane, at 1,325,240 to 1,325,611
_1265
HP15_1266: HP15_1266 - flavodoxin/nitric oxide synthase, at 1,325,669 to 1,326,274
_1266
Position (kb)
1323
1324
1325
1326 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1322.523 kb on + strand, within HP15_1263 at 1322.543 kb on + strand, within HP15_1263 at 1322.755 kb on + strand, within HP15_1263 at 1322.835 kb on - strand, within HP15_1263 at 1322.836 kb on + strand, within HP15_1263 at 1322.844 kb on - strand, within HP15_1263 at 1323.027 kb on + strand, within HP15_1263 at 1323.167 kb on + strand, within HP15_1263 at 1323.492 kb on + strand at 1323.573 kb on - strand at 1323.681 kb on - strand, within HP15_1264 at 1323.681 kb on - strand, within HP15_1264 at 1323.683 kb on + strand, within HP15_1264 at 1323.745 kb on + strand, within HP15_1264 at 1324.060 kb on + strand, within HP15_1264 at 1324.090 kb on - strand, within HP15_1264 at 1324.107 kb on - strand, within HP15_1264 at 1324.119 kb on - strand, within HP15_1264 at 1324.119 kb on - strand, within HP15_1264 at 1324.454 kb on - strand, within HP15_1264 at 1324.523 kb on + strand, within HP15_1264 at 1324.531 kb on - strand, within HP15_1264 at 1324.531 kb on - strand, within HP15_1264 at 1324.531 kb on - strand, within HP15_1264 at 1324.541 kb on - strand, within HP15_1264 at 1324.648 kb on - strand, within HP15_1264 at 1324.648 kb on - strand, within HP15_1264 at 1324.657 kb on + strand, within HP15_1264 at 1324.694 kb on + strand, within HP15_1264 at 1324.694 kb on + strand, within HP15_1264 at 1324.702 kb on - strand, within HP15_1264 at 1324.707 kb on - strand, within HP15_1264 at 1324.763 kb on + strand, within HP15_1264 at 1324.817 kb on + strand, within HP15_1264 at 1324.838 kb on - strand, within HP15_1264 at 1324.922 kb on + strand, within HP15_1264 at 1324.929 kb on + strand, within HP15_1264 at 1324.992 kb on + strand, within HP15_1264 at 1325.065 kb on + strand at 1325.154 kb on + strand at 1325.184 kb on + strand at 1325.192 kb on - strand at 1325.192 kb on - strand at 1325.243 kb on + strand at 1325.312 kb on + strand, within HP15_1265 at 1325.320 kb on - strand, within HP15_1265 at 1325.335 kb on + strand, within HP15_1265 at 1325.453 kb on + strand, within HP15_1265 at 1325.491 kb on - strand, within HP15_1265 at 1325.502 kb on + strand, within HP15_1265 at 1325.537 kb on - strand, within HP15_1265 at 1325.611 kb on - strand at 1325.633 kb on + strand at 1325.641 kb on - strand at 1325.696 kb on + strand at 1325.725 kb on + strand at 1325.776 kb on + strand, within HP15_1266 at 1325.783 kb on + strand, within HP15_1266 at 1325.783 kb on + strand, within HP15_1266 at 1325.824 kb on + strand, within HP15_1266 at 1325.836 kb on + strand, within HP15_1266 at 1325.859 kb on - strand, within HP15_1266 at 1325.975 kb on - strand, within HP15_1266
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 1,322,523 + HP15_1263 0.17 -0.7 1,322,543 + HP15_1263 0.19 -0.7 1,322,755 + HP15_1263 0.39 -1.7 1,322,835 - HP15_1263 0.47 -2.5 1,322,836 + HP15_1263 0.47 -0.7 1,322,844 - HP15_1263 0.48 -0.9 1,323,027 + HP15_1263 0.65 +0.4 1,323,167 + HP15_1263 0.78 -1.0 1,323,492 + -0.1 1,323,573 - +0.3 1,323,681 - HP15_1264 0.16 +0.7 1,323,681 - HP15_1264 0.16 -0.1 1,323,683 + HP15_1264 0.16 +0.3 1,323,745 + HP15_1264 0.19 +0.1 1,324,060 + HP15_1264 0.37 +0.3 1,324,090 - HP15_1264 0.38 +2.4 1,324,107 - HP15_1264 0.39 +1.1 1,324,119 - HP15_1264 0.40 +1.4 1,324,119 - HP15_1264 0.40 +1.0 1,324,454 - HP15_1264 0.59 -0.5 1,324,523 + HP15_1264 0.63 +0.3 1,324,531 - HP15_1264 0.63 +1.4 1,324,531 - HP15_1264 0.63 -0.7 1,324,531 - HP15_1264 0.63 +0.5 1,324,541 - HP15_1264 0.64 +0.4 1,324,648 - HP15_1264 0.70 -2.1 1,324,648 - HP15_1264 0.70 +0.5 1,324,657 + HP15_1264 0.70 +0.2 1,324,694 + HP15_1264 0.72 -0.4 1,324,694 + HP15_1264 0.72 -1.4 1,324,702 - HP15_1264 0.73 -2.4 1,324,707 - HP15_1264 0.73 -0.7 1,324,763 + HP15_1264 0.76 +1.1 1,324,817 + HP15_1264 0.79 -0.6 1,324,838 - HP15_1264 0.80 -1.5 1,324,922 + HP15_1264 0.85 -0.1 1,324,929 + HP15_1264 0.85 -0.3 1,324,992 + HP15_1264 0.89 -1.2 1,325,065 + +0.3 1,325,154 + -0.1 1,325,184 + -1.1 1,325,192 - +0.1 1,325,192 - -0.1 1,325,243 + +0.6 1,325,312 + HP15_1265 0.19 +0.4 1,325,320 - HP15_1265 0.22 -2.1 1,325,335 + HP15_1265 0.26 -1.4 1,325,453 + HP15_1265 0.57 -0.9 1,325,491 - HP15_1265 0.67 +0.2 1,325,502 + HP15_1265 0.70 -0.7 1,325,537 - HP15_1265 0.80 -1.0 1,325,611 - +0.7 1,325,633 + +0.7 1,325,641 - +0.5 1,325,696 + +0.5 1,325,725 + -0.9 1,325,776 + HP15_1266 0.18 +0.9 1,325,783 + HP15_1266 0.19 +0.6 1,325,783 + HP15_1266 0.19 +0.8 1,325,824 + HP15_1266 0.26 -1.7 1,325,836 + HP15_1266 0.28 +0.0 1,325,859 - HP15_1266 0.31 -0.7 1,325,975 - HP15_1266 0.50 -4.1
Or see this region's nucleotide sequence