Strain Fitness in Marinobacter adhaerens HP15 around HP15_1258

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1255 and HP15_1256 are separated by 63 nucleotidesHP15_1256 and HP15_1257 are separated by 80 nucleotidesHP15_1257 and HP15_1258 are separated by 1 nucleotidesHP15_1258 and HP15_1259 are separated by 52 nucleotides HP15_1255: HP15_1255 - protein containing Smr protein/MutS2 C-terminal domain, at 1,315,784 to 1,316,365 _1255 HP15_1256: HP15_1256 - conserved hypothetical protein, at 1,316,429 to 1,316,620 _1256 HP15_1257: HP15_1257 - (2Fe-2S)-binding domain protein, at 1,316,701 to 1,317,186 _1257 HP15_1258: HP15_1258 - isoquinoline 1-oxidoreductase, beta subunit, at 1,317,188 to 1,319,392 _1258 HP15_1259: HP15_1259 - xanthine dehydrogenase accessory factor, at 1,319,445 to 1,320,380 _1259 Position (kb) 1317 1318 1319 1320Strain fitness (log2 ratio) -2 -1 0 1 2at 1316.239 kb on + strand, within HP15_1255at 1316.249 kb on + strand, within HP15_1255at 1316.356 kb on - strandat 1316.360 kb on + strandat 1316.368 kb on - strandat 1316.513 kb on + strand, within HP15_1256at 1316.560 kb on + strand, within HP15_1256at 1316.581 kb on + strand, within HP15_1256at 1316.627 kb on + strandat 1316.693 kb on + strandat 1316.837 kb on - strand, within HP15_1257at 1316.876 kb on + strand, within HP15_1257at 1317.015 kb on + strand, within HP15_1257at 1317.018 kb on - strand, within HP15_1257at 1317.222 kb on + strandat 1317.224 kb on + strandat 1317.296 kb on - strandat 1317.362 kb on + strandat 1317.363 kb on + strandat 1317.409 kb on - strand, within HP15_1258at 1317.548 kb on - strand, within HP15_1258at 1317.646 kb on - strand, within HP15_1258at 1317.911 kb on + strand, within HP15_1258at 1317.911 kb on + strand, within HP15_1258at 1317.919 kb on - strand, within HP15_1258at 1317.954 kb on - strand, within HP15_1258at 1318.075 kb on - strand, within HP15_1258at 1318.186 kb on + strand, within HP15_1258at 1318.248 kb on + strand, within HP15_1258at 1318.387 kb on - strand, within HP15_1258at 1318.387 kb on - strand, within HP15_1258at 1318.392 kb on - strand, within HP15_1258at 1318.524 kb on - strand, within HP15_1258at 1318.542 kb on - strand, within HP15_1258at 1318.644 kb on - strand, within HP15_1258at 1318.743 kb on + strand, within HP15_1258at 1318.783 kb on - strand, within HP15_1258at 1318.963 kb on + strand, within HP15_1258at 1318.995 kb on + strand, within HP15_1258at 1319.098 kb on + strand, within HP15_1258at 1319.192 kb on - strandat 1319.321 kb on + strandat 1319.321 kb on + strandat 1319.326 kb on + strandat 1319.355 kb on - strandat 1319.441 kb on - strandat 1319.535 kb on - strandat 1319.584 kb on + strand, within HP15_1259at 1319.621 kb on - strand, within HP15_1259at 1319.621 kb on - strand, within HP15_1259at 1319.687 kb on + strand, within HP15_1259at 1319.687 kb on + strand, within HP15_1259at 1319.743 kb on - strand, within HP15_1259at 1319.983 kb on + strand, within HP15_1259at 1320.085 kb on - strand, within HP15_1259at 1320.112 kb on + strand, within HP15_1259at 1320.112 kb on + strand, within HP15_1259at 1320.141 kb on - strand, within HP15_1259at 1320.158 kb on + strand, within HP15_1259at 1320.158 kb on + strand, within HP15_1259at 1320.361 kb on + strandat 1320.369 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,316,239 + HP15_1255 0.78 +0.4
1,316,249 + HP15_1255 0.80 +0.7
1,316,356 - +0.1
1,316,360 + -0.4
1,316,368 - -0.1
1,316,513 + HP15_1256 0.44 -1.3
1,316,560 + HP15_1256 0.68 -0.7
1,316,581 + HP15_1256 0.79 +0.1
1,316,627 + +0.6
1,316,693 + +0.3
1,316,837 - HP15_1257 0.28 +0.2
1,316,876 + HP15_1257 0.36 +0.9
1,317,015 + HP15_1257 0.65 +0.7
1,317,018 - HP15_1257 0.65 +0.4
1,317,222 + -1.2
1,317,224 + -0.2
1,317,296 - +0.1
1,317,362 + -1.3
1,317,363 + -1.4
1,317,409 - HP15_1258 0.10 -2.0
1,317,548 - HP15_1258 0.16 +0.2
1,317,646 - HP15_1258 0.21 -2.2
1,317,911 + HP15_1258 0.33 +0.3
1,317,911 + HP15_1258 0.33 -1.6
1,317,919 - HP15_1258 0.33 -2.0
1,317,954 - HP15_1258 0.35 -1.3
1,318,075 - HP15_1258 0.40 +1.2
1,318,186 + HP15_1258 0.45 -0.1
1,318,248 + HP15_1258 0.48 +0.7
1,318,387 - HP15_1258 0.54 -1.0
1,318,387 - HP15_1258 0.54 -0.0
1,318,392 - HP15_1258 0.55 -1.0
1,318,524 - HP15_1258 0.61 -0.5
1,318,542 - HP15_1258 0.61 +0.3
1,318,644 - HP15_1258 0.66 -0.1
1,318,743 + HP15_1258 0.71 +0.1
1,318,783 - HP15_1258 0.72 -2.2
1,318,963 + HP15_1258 0.80 +0.6
1,318,995 + HP15_1258 0.82 +0.3
1,319,098 + HP15_1258 0.87 -0.0
1,319,192 - -1.8
1,319,321 + -2.0
1,319,321 + +1.1
1,319,326 + +0.2
1,319,355 - -0.4
1,319,441 - +0.7
1,319,535 - +0.2
1,319,584 + HP15_1259 0.15 -0.2
1,319,621 - HP15_1259 0.19 -0.3
1,319,621 - HP15_1259 0.19 +0.6
1,319,687 + HP15_1259 0.26 -1.0
1,319,687 + HP15_1259 0.26 -1.6
1,319,743 - HP15_1259 0.32 -0.4
1,319,983 + HP15_1259 0.57 +2.0
1,320,085 - HP15_1259 0.68 +0.7
1,320,112 + HP15_1259 0.71 +0.3
1,320,112 + HP15_1259 0.71 +0.9
1,320,141 - HP15_1259 0.74 -2.1
1,320,158 + HP15_1259 0.76 -1.3
1,320,158 + HP15_1259 0.76 +0.7
1,320,361 + -1.8
1,320,369 - -0.5

Or see this region's nucleotide sequence