Strain Fitness in Marinobacter adhaerens HP15 around HP15_1237

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1236 and HP15_1237 are separated by 178 nucleotidesHP15_1237 and HP15_1238 are separated by 19 nucleotides HP15_1236: HP15_1236 - conserved hypothetical protein, at 1,285,897 to 1,288,026 _1236 HP15_1237: HP15_1237 - regulatory protein RecX-like protein, at 1,288,205 to 1,288,675 _1237 HP15_1238: HP15_1238 - transglycosylase, Slt family protein, at 1,288,695 to 1,290,215 _1238 Position (kb) 1288 1289Strain fitness (log2 ratio) -1 0 1 2 3at 1287.230 kb on + strand, within HP15_1236at 1287.415 kb on - strand, within HP15_1236at 1287.420 kb on + strand, within HP15_1236at 1287.513 kb on + strand, within HP15_1236at 1287.521 kb on - strand, within HP15_1236at 1287.533 kb on + strand, within HP15_1236at 1287.541 kb on - strand, within HP15_1236at 1287.546 kb on - strand, within HP15_1236at 1287.560 kb on + strand, within HP15_1236at 1287.580 kb on - strand, within HP15_1236at 1287.620 kb on - strand, within HP15_1236at 1287.651 kb on + strand, within HP15_1236at 1287.657 kb on + strand, within HP15_1236at 1287.672 kb on + strand, within HP15_1236at 1287.675 kb on - strand, within HP15_1236at 1287.690 kb on - strand, within HP15_1236at 1287.774 kb on - strand, within HP15_1236at 1287.890 kb on + strandat 1287.891 kb on - strandat 1287.900 kb on + strandat 1287.900 kb on + strandat 1287.900 kb on + strandat 1287.974 kb on - strandat 1287.985 kb on - strandat 1288.021 kb on + strandat 1288.256 kb on + strand, within HP15_1237at 1288.290 kb on + strand, within HP15_1237at 1288.402 kb on + strand, within HP15_1237at 1288.475 kb on + strand, within HP15_1237at 1288.477 kb on + strand, within HP15_1237at 1288.483 kb on - strand, within HP15_1237at 1288.492 kb on - strand, within HP15_1237at 1288.502 kb on - strand, within HP15_1237at 1288.516 kb on + strand, within HP15_1237at 1288.516 kb on + strand, within HP15_1237at 1288.524 kb on - strand, within HP15_1237at 1288.554 kb on + strand, within HP15_1237at 1288.608 kb on - strand, within HP15_1237at 1288.865 kb on + strand, within HP15_1238at 1288.873 kb on - strand, within HP15_1238at 1288.994 kb on + strand, within HP15_1238at 1288.999 kb on + strand, within HP15_1238at 1289.085 kb on - strand, within HP15_1238at 1289.240 kb on - strand, within HP15_1238at 1289.244 kb on - strand, within HP15_1238at 1289.508 kb on - strand, within HP15_1238at 1289.508 kb on - strand, within HP15_1238at 1289.553 kb on + strand, within HP15_1238at 1289.580 kb on - strand, within HP15_1238at 1289.672 kb on + strand, within HP15_1238at 1289.672 kb on + strand, within HP15_1238

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,287,230 + HP15_1236 0.63 +1.8
1,287,415 - HP15_1236 0.71 +0.4
1,287,420 + HP15_1236 0.72 -0.6
1,287,513 + HP15_1236 0.76 +1.2
1,287,521 - HP15_1236 0.76 -0.6
1,287,533 + HP15_1236 0.77 +2.9
1,287,541 - HP15_1236 0.77 +1.8
1,287,546 - HP15_1236 0.77 +1.6
1,287,560 + HP15_1236 0.78 +1.1
1,287,580 - HP15_1236 0.79 +0.2
1,287,620 - HP15_1236 0.81 +1.1
1,287,651 + HP15_1236 0.82 -0.0
1,287,657 + HP15_1236 0.83 +1.3
1,287,672 + HP15_1236 0.83 -0.2
1,287,675 - HP15_1236 0.83 +0.3
1,287,690 - HP15_1236 0.84 -0.4
1,287,774 - HP15_1236 0.88 -1.3
1,287,890 + +2.3
1,287,891 - -0.2
1,287,900 + +0.8
1,287,900 + -0.8
1,287,900 + +1.4
1,287,974 - -1.1
1,287,985 - +1.1
1,288,021 + +1.4
1,288,256 + HP15_1237 0.11 +0.3
1,288,290 + HP15_1237 0.18 +0.4
1,288,402 + HP15_1237 0.42 +0.5
1,288,475 + HP15_1237 0.57 -0.9
1,288,477 + HP15_1237 0.58 +0.1
1,288,483 - HP15_1237 0.59 +0.5
1,288,492 - HP15_1237 0.61 +0.6
1,288,502 - HP15_1237 0.63 +1.0
1,288,516 + HP15_1237 0.66 +0.0
1,288,516 + HP15_1237 0.66 +0.1
1,288,524 - HP15_1237 0.68 +0.3
1,288,554 + HP15_1237 0.74 -1.6
1,288,608 - HP15_1237 0.86 +0.2
1,288,865 + HP15_1238 0.11 -0.2
1,288,873 - HP15_1238 0.12 -0.4
1,288,994 + HP15_1238 0.20 +0.5
1,288,999 + HP15_1238 0.20 -0.2
1,289,085 - HP15_1238 0.26 +0.2
1,289,240 - HP15_1238 0.36 +1.4
1,289,244 - HP15_1238 0.36 -0.6
1,289,508 - HP15_1238 0.53 +0.5
1,289,508 - HP15_1238 0.53 +1.0
1,289,553 + HP15_1238 0.56 +0.4
1,289,580 - HP15_1238 0.58 +1.1
1,289,672 + HP15_1238 0.64 -1.7
1,289,672 + HP15_1238 0.64 +1.4

Or see this region's nucleotide sequence