Strain Fitness in Marinobacter adhaerens HP15 around HP15_1201

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1200 and HP15_1201 are separated by 997 nucleotidesHP15_1201 and HP15_1202 are separated by 5 nucleotides HP15_1200: HP15_1200 - conserved hypothetical protein, at 1,235,602 to 1,238,877 _1200 HP15_1201: HP15_1201 - conserved hypothetical protein, at 1,239,875 to 1,241,359 _1201 HP15_1202: HP15_1202 - large ATP-binding protein, at 1,241,365 to 1,243,338 _1202 Position (kb) 1239 1240 1241 1242Strain fitness (log2 ratio) -3 -2 -1 0 1at 1238.899 kb on + strandat 1238.907 kb on - strandat 1238.917 kb on - strandat 1239.063 kb on - strandat 1239.111 kb on - strandat 1239.113 kb on - strandat 1239.212 kb on + strandat 1239.238 kb on - strandat 1239.275 kb on - strandat 1239.335 kb on + strandat 1239.340 kb on + strandat 1239.512 kb on + strandat 1239.719 kb on - strandat 1239.853 kb on - strandat 1239.877 kb on + strandat 1239.914 kb on - strandat 1239.916 kb on + strandat 1239.941 kb on - strandat 1239.967 kb on - strandat 1240.302 kb on + strand, within HP15_1201at 1240.367 kb on - strand, within HP15_1201at 1240.367 kb on - strand, within HP15_1201at 1240.369 kb on - strand, within HP15_1201at 1240.371 kb on + strand, within HP15_1201at 1240.407 kb on + strand, within HP15_1201at 1240.462 kb on - strand, within HP15_1201at 1240.462 kb on - strand, within HP15_1201at 1240.462 kb on - strand, within HP15_1201at 1240.486 kb on + strand, within HP15_1201at 1240.486 kb on + strand, within HP15_1201at 1240.486 kb on + strand, within HP15_1201at 1240.486 kb on + strand, within HP15_1201at 1240.492 kb on + strand, within HP15_1201at 1240.547 kb on + strand, within HP15_1201at 1240.613 kb on - strand, within HP15_1201at 1240.623 kb on + strand, within HP15_1201at 1240.650 kb on - strand, within HP15_1201at 1240.665 kb on + strand, within HP15_1201at 1240.673 kb on - strand, within HP15_1201at 1240.673 kb on - strand, within HP15_1201at 1240.673 kb on - strand, within HP15_1201at 1240.673 kb on - strand, within HP15_1201at 1240.675 kb on + strand, within HP15_1201at 1240.733 kb on + strand, within HP15_1201at 1240.734 kb on - strand, within HP15_1201at 1241.057 kb on + strand, within HP15_1201at 1241.109 kb on + strand, within HP15_1201at 1241.141 kb on + strand, within HP15_1201at 1241.163 kb on + strand, within HP15_1201at 1241.171 kb on - strand, within HP15_1201at 1241.171 kb on - strand, within HP15_1201at 1241.171 kb on - strand, within HP15_1201at 1241.201 kb on - strand, within HP15_1201at 1241.250 kb on - strandat 1241.273 kb on + strandat 1241.399 kb on - strandat 1241.614 kb on + strand, within HP15_1202at 1241.648 kb on + strand, within HP15_1202at 1241.938 kb on - strand, within HP15_1202at 1242.008 kb on + strand, within HP15_1202at 1242.078 kb on - strand, within HP15_1202at 1242.111 kb on + strand, within HP15_1202at 1242.135 kb on + strand, within HP15_1202at 1242.156 kb on - strand, within HP15_1202at 1242.184 kb on + strand, within HP15_1202at 1242.305 kb on - strand, within HP15_1202

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,238,899 + -1.8
1,238,907 - -1.4
1,238,917 - +0.2
1,239,063 - +0.1
1,239,111 - +0.1
1,239,113 - +0.4
1,239,212 + -1.7
1,239,238 - -2.0
1,239,275 - +0.5
1,239,335 + +0.4
1,239,340 + -1.5
1,239,512 + +0.6
1,239,719 - -1.5
1,239,853 - -0.8
1,239,877 + -0.3
1,239,914 - +0.4
1,239,916 + +0.4
1,239,941 - -3.2
1,239,967 - +0.2
1,240,302 + HP15_1201 0.29 -0.4
1,240,367 - HP15_1201 0.33 -1.5
1,240,367 - HP15_1201 0.33 +0.2
1,240,369 - HP15_1201 0.33 -0.2
1,240,371 + HP15_1201 0.33 -2.2
1,240,407 + HP15_1201 0.36 +1.1
1,240,462 - HP15_1201 0.40 +0.7
1,240,462 - HP15_1201 0.40 +0.2
1,240,462 - HP15_1201 0.40 -0.1
1,240,486 + HP15_1201 0.41 +0.2
1,240,486 + HP15_1201 0.41 -0.1
1,240,486 + HP15_1201 0.41 -0.6
1,240,486 + HP15_1201 0.41 -0.5
1,240,492 + HP15_1201 0.42 +0.5
1,240,547 + HP15_1201 0.45 -1.0
1,240,613 - HP15_1201 0.50 -0.8
1,240,623 + HP15_1201 0.50 +0.2
1,240,650 - HP15_1201 0.52 -1.1
1,240,665 + HP15_1201 0.53 -2.6
1,240,673 - HP15_1201 0.54 +0.1
1,240,673 - HP15_1201 0.54 -1.7
1,240,673 - HP15_1201 0.54 +0.4
1,240,673 - HP15_1201 0.54 -1.2
1,240,675 + HP15_1201 0.54 +1.5
1,240,733 + HP15_1201 0.58 +0.2
1,240,734 - HP15_1201 0.58 +0.2
1,241,057 + HP15_1201 0.80 +0.2
1,241,109 + HP15_1201 0.83 -1.7
1,241,141 + HP15_1201 0.85 +0.1
1,241,163 + HP15_1201 0.87 -0.1
1,241,171 - HP15_1201 0.87 -3.4
1,241,171 - HP15_1201 0.87 -0.4
1,241,171 - HP15_1201 0.87 -2.3
1,241,201 - HP15_1201 0.89 +0.2
1,241,250 - +0.8
1,241,273 + -1.0
1,241,399 - -0.5
1,241,614 + HP15_1202 0.13 +0.2
1,241,648 + HP15_1202 0.14 -1.2
1,241,938 - HP15_1202 0.29 -2.0
1,242,008 + HP15_1202 0.33 +0.8
1,242,078 - HP15_1202 0.36 -0.5
1,242,111 + HP15_1202 0.38 +0.1
1,242,135 + HP15_1202 0.39 +0.1
1,242,156 - HP15_1202 0.40 +0.4
1,242,184 + HP15_1202 0.41 -0.4
1,242,305 - HP15_1202 0.48 +1.5

Or see this region's nucleotide sequence