Experiment: m.b. Zinc 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_110 and HP15_111 are separated by 17 nucleotides HP15_111 and HP15_112 are separated by 424 nucleotides
HP15_110: HP15_110 - heavy metal efflux pump, CzcA family, at 113,868 to 116,975
_110
HP15_111: HP15_111 - nitrogen regulatory protein PII-like protein, at 116,993 to 117,337
_111
HP15_112: HP15_112 - TonB-dependent receptor protein, at 117,762 to 119,873
_112
Position (kb) 116
117
118 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 116.010 kb on + strand, within HP15_110 at 116.012 kb on + strand, within HP15_110 at 116.058 kb on - strand, within HP15_110 at 116.069 kb on + strand, within HP15_110 at 116.096 kb on - strand, within HP15_110 at 116.297 kb on - strand, within HP15_110 at 116.353 kb on + strand, within HP15_110 at 116.368 kb on + strand, within HP15_110 at 116.467 kb on - strand, within HP15_110 at 116.495 kb on - strand, within HP15_110 at 116.556 kb on + strand, within HP15_110 at 116.556 kb on + strand, within HP15_110 at 116.684 kb on - strand at 116.699 kb on + strand at 116.753 kb on + strand at 116.760 kb on + strand at 116.781 kb on + strand at 116.781 kb on + strand at 116.789 kb on - strand at 116.813 kb on - strand at 116.847 kb on - strand at 116.896 kb on + strand at 116.896 kb on + strand at 116.897 kb on - strand at 116.904 kb on - strand at 116.911 kb on + strand at 116.927 kb on - strand at 116.929 kb on + strand at 116.932 kb on - strand at 116.937 kb on - strand at 116.937 kb on - strand at 116.964 kb on + strand at 117.014 kb on - strand at 117.067 kb on - strand, within HP15_111 at 117.161 kb on - strand, within HP15_111 at 117.271 kb on + strand, within HP15_111 at 117.279 kb on - strand, within HP15_111 at 117.317 kb on + strand at 117.317 kb on + strand at 117.325 kb on - strand at 117.327 kb on + strand at 117.436 kb on - strand at 117.530 kb on - strand at 117.541 kb on - strand at 117.577 kb on - strand at 117.642 kb on + strand at 117.702 kb on + strand at 117.744 kb on - strand at 117.747 kb on + strand at 117.963 kb on + strand at 117.971 kb on - strand at 117.992 kb on - strand, within HP15_112 at 117.994 kb on - strand, within HP15_112 at 118.012 kb on - strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.075 kb on + strand, within HP15_112 at 118.083 kb on - strand, within HP15_112 at 118.098 kb on - strand, within HP15_112 at 118.111 kb on + strand, within HP15_112 at 118.119 kb on - strand, within HP15_112 at 118.119 kb on - strand, within HP15_112 at 118.125 kb on + strand, within HP15_112 at 118.144 kb on - strand, within HP15_112 at 118.151 kb on - strand, within HP15_112 at 118.156 kb on - strand, within HP15_112 at 118.174 kb on - strand, within HP15_112
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM remove 116,010 + HP15_110 0.69 -2.7 116,012 + HP15_110 0.69 -2.6 116,058 - HP15_110 0.70 -2.6 116,069 + HP15_110 0.71 -2.1 116,096 - HP15_110 0.72 -2.0 116,297 - HP15_110 0.78 -3.3 116,353 + HP15_110 0.80 -3.0 116,368 + HP15_110 0.80 -2.7 116,467 - HP15_110 0.84 -0.9 116,495 - HP15_110 0.85 -4.3 116,556 + HP15_110 0.86 -2.1 116,556 + HP15_110 0.86 -2.6 116,684 - -2.8 116,699 + -3.2 116,753 + -2.5 116,760 + -2.8 116,781 + -1.6 116,781 + -0.9 116,789 - -3.6 116,813 - -2.8 116,847 - -3.3 116,896 + -2.9 116,896 + -2.0 116,897 - -3.5 116,904 - -3.8 116,911 + -2.3 116,927 - -1.4 116,929 + -2.1 116,932 - -1.0 116,937 - -1.6 116,937 - -2.1 116,964 + -3.3 117,014 - +0.1 117,067 - HP15_111 0.21 +0.1 117,161 - HP15_111 0.49 -0.2 117,271 + HP15_111 0.81 -0.5 117,279 - HP15_111 0.83 -0.9 117,317 + -0.6 117,317 + -0.8 117,325 - +0.4 117,327 + -0.5 117,436 - +0.4 117,530 - +0.3 117,541 - +0.2 117,577 - +0.3 117,642 + +0.4 117,702 + +0.4 117,744 - -1.0 117,747 + +0.9 117,963 + +0.5 117,971 - +0.9 117,992 - HP15_112 0.11 -1.4 117,994 - HP15_112 0.11 +0.1 118,012 - HP15_112 0.12 +0.2 118,075 + HP15_112 0.15 +0.4 118,075 + HP15_112 0.15 -0.2 118,075 + HP15_112 0.15 -0.3 118,075 + HP15_112 0.15 -1.6 118,083 - HP15_112 0.15 +0.3 118,098 - HP15_112 0.16 +0.4 118,111 + HP15_112 0.17 -1.0 118,119 - HP15_112 0.17 -0.2 118,119 - HP15_112 0.17 -0.7 118,125 + HP15_112 0.17 +0.9 118,144 - HP15_112 0.18 -2.9 118,151 - HP15_112 0.18 -1.8 118,156 - HP15_112 0.19 -1.4 118,174 - HP15_112 0.20 +0.9
Or see this region's nucleotide sequence