Strain Fitness in Marinobacter adhaerens HP15 around HP15_110

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_109 and HP15_110 are separated by 14 nucleotidesHP15_110 and HP15_111 are separated by 17 nucleotidesHP15_111 and HP15_112 are separated by 424 nucleotides HP15_109: HP15_109 - cation efflux family protein, at 112,669 to 113,853 _109 HP15_110: HP15_110 - heavy metal efflux pump, CzcA family, at 113,868 to 116,975 _110 HP15_111: HP15_111 - nitrogen regulatory protein PII-like protein, at 116,993 to 117,337 _111 HP15_112: HP15_112 - TonB-dependent receptor protein, at 117,762 to 119,873 _112 Position (kb) 113 114 115 116 117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 112.964 kb on - strand, within HP15_109at 113.010 kb on + strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.028 kb on - strand, within HP15_109at 113.033 kb on - strand, within HP15_109at 113.131 kb on + strand, within HP15_109at 113.255 kb on + strand, within HP15_109at 113.287 kb on - strand, within HP15_109at 113.292 kb on - strand, within HP15_109at 113.297 kb on - strand, within HP15_109at 113.320 kb on + strand, within HP15_109at 113.327 kb on + strand, within HP15_109at 113.334 kb on - strand, within HP15_109at 113.336 kb on + strand, within HP15_109at 113.336 kb on + strand, within HP15_109at 113.349 kb on - strand, within HP15_109at 113.368 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.434 kb on + strand, within HP15_109at 113.474 kb on + strand, within HP15_109at 113.492 kb on + strand, within HP15_109at 113.539 kb on + strand, within HP15_109at 113.627 kb on - strand, within HP15_109at 113.636 kb on + strand, within HP15_109at 113.705 kb on - strand, within HP15_109at 113.711 kb on + strand, within HP15_109at 113.749 kb on - strandat 113.782 kb on + strandat 113.803 kb on - strandat 113.805 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.848 kb on + strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.856 kb on - strandat 113.904 kb on + strandat 114.006 kb on + strandat 114.009 kb on - strandat 114.025 kb on + strandat 114.070 kb on + strandat 114.179 kb on - strand, within HP15_110at 114.212 kb on - strand, within HP15_110at 114.248 kb on + strand, within HP15_110at 114.274 kb on + strand, within HP15_110at 114.292 kb on - strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.348 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.374 kb on + strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.382 kb on - strand, within HP15_110at 114.405 kb on - strand, within HP15_110at 114.421 kb on + strand, within HP15_110at 114.437 kb on + strand, within HP15_110at 114.445 kb on - strand, within HP15_110at 114.478 kb on - strand, within HP15_110at 114.554 kb on + strand, within HP15_110at 114.575 kb on + strand, within HP15_110at 114.591 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.629 kb on + strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.637 kb on - strand, within HP15_110at 114.677 kb on + strand, within HP15_110at 114.682 kb on + strand, within HP15_110at 114.706 kb on + strand, within HP15_110at 114.706 kb on + strand, within HP15_110at 114.711 kb on + strand, within HP15_110at 114.714 kb on - strand, within HP15_110at 114.714 kb on - strand, within HP15_110at 114.716 kb on + strand, within HP15_110at 114.724 kb on - strand, within HP15_110at 114.724 kb on - strand, within HP15_110at 114.805 kb on + strand, within HP15_110at 114.851 kb on + strand, within HP15_110at 114.882 kb on + strand, within HP15_110at 114.882 kb on + strand, within HP15_110at 114.889 kb on + strand, within HP15_110at 114.902 kb on - strand, within HP15_110at 114.908 kb on + strand, within HP15_110at 114.916 kb on - strand, within HP15_110at 115.030 kb on + strand, within HP15_110at 115.038 kb on - strand, within HP15_110at 115.038 kb on - strand, within HP15_110at 115.057 kb on + strand, within HP15_110at 115.064 kb on + strand, within HP15_110at 115.065 kb on - strand, within HP15_110at 115.065 kb on - strand, within HP15_110at 115.107 kb on - strand, within HP15_110at 115.112 kb on - strand, within HP15_110at 115.112 kb on - strand, within HP15_110at 115.260 kb on + strand, within HP15_110at 115.260 kb on + strand, within HP15_110at 115.260 kb on + strand, within HP15_110at 115.260 kb on - strand, within HP15_110at 115.435 kb on + strand, within HP15_110at 115.442 kb on + strand, within HP15_110at 115.470 kb on + strand, within HP15_110at 115.509 kb on + strand, within HP15_110at 115.550 kb on + strand, within HP15_110at 115.716 kb on + strand, within HP15_110at 115.811 kb on + strand, within HP15_110at 115.811 kb on + strand, within HP15_110at 115.938 kb on - strand, within HP15_110at 115.962 kb on + strand, within HP15_110at 116.010 kb on + strand, within HP15_110at 116.012 kb on + strand, within HP15_110at 116.058 kb on - strand, within HP15_110at 116.069 kb on + strand, within HP15_110at 116.096 kb on - strand, within HP15_110at 116.297 kb on - strand, within HP15_110at 116.353 kb on + strand, within HP15_110at 116.368 kb on + strand, within HP15_110at 116.467 kb on - strand, within HP15_110at 116.495 kb on - strand, within HP15_110at 116.556 kb on + strand, within HP15_110at 116.556 kb on + strand, within HP15_110at 116.684 kb on - strandat 116.699 kb on + strandat 116.753 kb on + strandat 116.760 kb on + strandat 116.781 kb on + strandat 116.781 kb on + strandat 116.789 kb on - strandat 116.813 kb on - strandat 116.847 kb on - strandat 116.896 kb on + strandat 116.896 kb on + strandat 116.897 kb on - strandat 116.904 kb on - strandat 116.911 kb on + strandat 116.927 kb on - strandat 116.929 kb on + strandat 116.932 kb on - strandat 116.937 kb on - strandat 116.937 kb on - strandat 116.964 kb on + strandat 117.014 kb on - strandat 117.067 kb on - strand, within HP15_111at 117.161 kb on - strand, within HP15_111at 117.271 kb on + strand, within HP15_111at 117.279 kb on - strand, within HP15_111at 117.317 kb on + strandat 117.317 kb on + strandat 117.325 kb on - strandat 117.327 kb on + strandat 117.436 kb on - strandat 117.530 kb on - strandat 117.541 kb on - strandat 117.577 kb on - strandat 117.642 kb on + strandat 117.702 kb on + strandat 117.744 kb on - strandat 117.747 kb on + strandat 117.963 kb on + strandat 117.971 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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112,964 - HP15_109 0.25 -0.7
113,010 + HP15_109 0.29 -1.0
113,028 - HP15_109 0.30 -2.0
113,028 - HP15_109 0.30 -1.1
113,028 - HP15_109 0.30 -1.0
113,033 - HP15_109 0.31 -1.8
113,131 + HP15_109 0.39 -0.6
113,255 + HP15_109 0.49 -0.5
113,287 - HP15_109 0.52 +0.7
113,292 - HP15_109 0.53 -0.4
113,297 - HP15_109 0.53 -1.1
113,320 + HP15_109 0.55 -0.8
113,327 + HP15_109 0.56 -1.6
113,334 - HP15_109 0.56 -2.3
113,336 + HP15_109 0.56 -1.4
113,336 + HP15_109 0.56 -1.0
113,349 - HP15_109 0.57 -1.1
113,368 + HP15_109 0.59 -1.3
113,434 + HP15_109 0.65 -2.7
113,434 + HP15_109 0.65 +0.6
113,434 + HP15_109 0.65 -2.6
113,474 + HP15_109 0.68 -1.5
113,492 + HP15_109 0.69 +0.4
113,539 + HP15_109 0.73 -0.4
113,627 - HP15_109 0.81 -2.2
113,636 + HP15_109 0.82 -2.3
113,705 - HP15_109 0.87 -2.7
113,711 + HP15_109 0.88 -3.6
113,749 - -2.1
113,782 + -2.1
113,803 - -2.0
113,805 + -2.9
113,848 + -0.9
113,848 + -0.8
113,848 + -0.6
113,848 + -0.0
113,856 - -0.8
113,856 - -1.0
113,856 - -1.9
113,856 - -0.5
113,904 + -1.2
114,006 + -0.6
114,009 - -1.0
114,025 + -2.3
114,070 + -0.7
114,179 - HP15_110 0.10 -1.0
114,212 - HP15_110 0.11 -1.2
114,248 + HP15_110 0.12 -2.1
114,274 + HP15_110 0.13 -1.0
114,292 - HP15_110 0.14 -2.7
114,348 + HP15_110 0.15 -2.7
114,348 + HP15_110 0.15 +0.4
114,348 + HP15_110 0.15 -2.5
114,374 + HP15_110 0.16 -3.2
114,374 + HP15_110 0.16 -1.3
114,374 + HP15_110 0.16 -0.9
114,374 + HP15_110 0.16 -2.0
114,374 + HP15_110 0.16 -1.3
114,374 + HP15_110 0.16 -1.4
114,374 + HP15_110 0.16 -1.5
114,374 + HP15_110 0.16 -1.0
114,374 + HP15_110 0.16 -3.2
114,382 - HP15_110 0.17 -0.6
114,382 - HP15_110 0.17 -1.4
114,382 - HP15_110 0.17 -2.6
114,382 - HP15_110 0.17 -3.1
114,382 - HP15_110 0.17 -1.0
114,405 - HP15_110 0.17 -2.3
114,421 + HP15_110 0.18 -2.1
114,437 + HP15_110 0.18 -0.4
114,445 - HP15_110 0.19 -2.9
114,478 - HP15_110 0.20 -2.1
114,554 + HP15_110 0.22 -0.9
114,575 + HP15_110 0.23 -2.5
114,591 + HP15_110 0.23 -3.5
114,629 + HP15_110 0.24 -0.4
114,629 + HP15_110 0.24 -1.2
114,629 + HP15_110 0.24 -1.4
114,637 - HP15_110 0.25 -0.8
114,637 - HP15_110 0.25 -1.5
114,637 - HP15_110 0.25 -1.2
114,637 - HP15_110 0.25 +0.1
114,637 - HP15_110 0.25 -0.6
114,677 + HP15_110 0.26 -1.2
114,682 + HP15_110 0.26 -2.2
114,706 + HP15_110 0.27 -2.5
114,706 + HP15_110 0.27 -0.4
114,711 + HP15_110 0.27 -1.6
114,714 - HP15_110 0.27 -1.7
114,714 - HP15_110 0.27 -1.5
114,716 + HP15_110 0.27 -1.1
114,724 - HP15_110 0.28 -1.9
114,724 - HP15_110 0.28 -1.0
114,805 + HP15_110 0.30 -1.6
114,851 + HP15_110 0.32 -1.6
114,882 + HP15_110 0.33 -2.3
114,882 + HP15_110 0.33 -1.3
114,889 + HP15_110 0.33 -0.6
114,902 - HP15_110 0.33 -0.9
114,908 + HP15_110 0.33 -2.3
114,916 - HP15_110 0.34 -2.0
115,030 + HP15_110 0.37 -1.0
115,038 - HP15_110 0.38 -1.6
115,038 - HP15_110 0.38 -1.1
115,057 + HP15_110 0.38 -0.6
115,064 + HP15_110 0.38 -3.0
115,065 - HP15_110 0.39 -3.6
115,065 - HP15_110 0.39 -2.5
115,107 - HP15_110 0.40 -0.6
115,112 - HP15_110 0.40 -2.0
115,112 - HP15_110 0.40 -0.4
115,260 + HP15_110 0.45 +0.0
115,260 + HP15_110 0.45 -1.5
115,260 + HP15_110 0.45 -2.5
115,260 - HP15_110 0.45 -1.9
115,435 + HP15_110 0.50 -2.3
115,442 + HP15_110 0.51 -2.8
115,470 + HP15_110 0.52 -3.6
115,509 + HP15_110 0.53 -1.4
115,550 + HP15_110 0.54 -1.1
115,716 + HP15_110 0.59 -1.0
115,811 + HP15_110 0.63 -2.2
115,811 + HP15_110 0.63 -1.7
115,938 - HP15_110 0.67 -2.0
115,962 + HP15_110 0.67 -2.1
116,010 + HP15_110 0.69 -2.7
116,012 + HP15_110 0.69 -2.6
116,058 - HP15_110 0.70 -2.6
116,069 + HP15_110 0.71 -2.1
116,096 - HP15_110 0.72 -2.0
116,297 - HP15_110 0.78 -3.3
116,353 + HP15_110 0.80 -3.0
116,368 + HP15_110 0.80 -2.7
116,467 - HP15_110 0.84 -0.9
116,495 - HP15_110 0.85 -4.3
116,556 + HP15_110 0.86 -2.1
116,556 + HP15_110 0.86 -2.6
116,684 - -2.8
116,699 + -3.2
116,753 + -2.5
116,760 + -2.8
116,781 + -1.6
116,781 + -0.9
116,789 - -3.6
116,813 - -2.8
116,847 - -3.3
116,896 + -2.9
116,896 + -2.0
116,897 - -3.5
116,904 - -3.8
116,911 + -2.3
116,927 - -1.4
116,929 + -2.1
116,932 - -1.0
116,937 - -1.6
116,937 - -2.1
116,964 + -3.3
117,014 - +0.1
117,067 - HP15_111 0.21 +0.1
117,161 - HP15_111 0.49 -0.2
117,271 + HP15_111 0.81 -0.5
117,279 - HP15_111 0.83 -0.9
117,317 + -0.6
117,317 + -0.8
117,325 - +0.4
117,327 + -0.5
117,436 - +0.4
117,530 - +0.3
117,541 - +0.2
117,577 - +0.3
117,642 + +0.4
117,702 + +0.4
117,744 - -1.0
117,747 + +0.9
117,963 + +0.5
117,971 - +0.9

Or see this region's nucleotide sequence