Strain Fitness in Marinobacter adhaerens HP15 around HP15_1062

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1061 and HP15_1062 are separated by 61 nucleotidesHP15_1062 and HP15_1063 are separated by 165 nucleotidesHP15_1063 and HP15_1064 overlap by 4 nucleotides HP15_1061: HP15_1061 - diadenosine tetraphosphatase and related serine/threonine protein phosphatase, at 1,085,475 to 1,086,494 _1061 HP15_1062: HP15_1062 - rhomboid family protein, at 1,086,556 to 1,087,401 _1062 HP15_1063: HP15_1063 - protein containing DUF1315, at 1,087,567 to 1,087,857 _1063 HP15_1064: HP15_1064 - conserved hypothetical protein, at 1,087,854 to 1,088,693 _1064 Position (kb) 1086 1087 1088Strain fitness (log2 ratio) -3 -2 -1 0 1at 1085.596 kb on + strand, within HP15_1061at 1085.670 kb on + strand, within HP15_1061at 1085.670 kb on + strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.678 kb on - strand, within HP15_1061at 1085.692 kb on + strand, within HP15_1061at 1085.742 kb on + strand, within HP15_1061at 1085.747 kb on + strand, within HP15_1061at 1085.808 kb on + strand, within HP15_1061at 1085.843 kb on + strand, within HP15_1061at 1085.885 kb on + strand, within HP15_1061at 1085.885 kb on + strand, within HP15_1061at 1085.893 kb on - strand, within HP15_1061at 1085.893 kb on - strand, within HP15_1061at 1085.939 kb on - strand, within HP15_1061at 1085.978 kb on + strand, within HP15_1061at 1086.083 kb on - strand, within HP15_1061at 1086.107 kb on - strand, within HP15_1061at 1086.146 kb on + strand, within HP15_1061at 1086.162 kb on + strand, within HP15_1061at 1086.162 kb on + strand, within HP15_1061at 1086.162 kb on + strand, within HP15_1061at 1086.170 kb on - strand, within HP15_1061at 1086.535 kb on + strandat 1086.574 kb on - strandat 1086.588 kb on - strandat 1086.610 kb on - strandat 1086.610 kb on - strandat 1086.739 kb on + strand, within HP15_1062at 1086.747 kb on - strand, within HP15_1062at 1086.820 kb on - strand, within HP15_1062at 1086.840 kb on - strand, within HP15_1062at 1086.974 kb on - strand, within HP15_1062at 1087.161 kb on + strand, within HP15_1062at 1087.277 kb on + strand, within HP15_1062at 1087.332 kb on + strandat 1087.446 kb on + strandat 1087.808 kb on - strand, within HP15_1063at 1087.851 kb on + strandat 1087.935 kb on - strandat 1088.184 kb on + strand, within HP15_1064

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,085,596 + HP15_1061 0.12 +0.7
1,085,670 + HP15_1061 0.19 +0.7
1,085,670 + HP15_1061 0.19 -0.2
1,085,678 - HP15_1061 0.20 +1.0
1,085,678 - HP15_1061 0.20 -0.3
1,085,678 - HP15_1061 0.20 -1.1
1,085,678 - HP15_1061 0.20 -1.6
1,085,678 - HP15_1061 0.20 -2.1
1,085,678 - HP15_1061 0.20 -0.0
1,085,692 + HP15_1061 0.21 -1.2
1,085,742 + HP15_1061 0.26 +0.4
1,085,747 + HP15_1061 0.27 -0.5
1,085,808 + HP15_1061 0.33 +0.0
1,085,843 + HP15_1061 0.36 -1.8
1,085,885 + HP15_1061 0.40 +0.2
1,085,885 + HP15_1061 0.40 -0.3
1,085,893 - HP15_1061 0.41 -0.3
1,085,893 - HP15_1061 0.41 +0.3
1,085,939 - HP15_1061 0.45 -0.3
1,085,978 + HP15_1061 0.49 +0.1
1,086,083 - HP15_1061 0.60 +0.3
1,086,107 - HP15_1061 0.62 +0.1
1,086,146 + HP15_1061 0.66 +0.4
1,086,162 + HP15_1061 0.67 -1.4
1,086,162 + HP15_1061 0.67 +0.5
1,086,162 + HP15_1061 0.67 +0.6
1,086,170 - HP15_1061 0.68 +0.0
1,086,535 + -0.6
1,086,574 - -3.7
1,086,588 - +0.1
1,086,610 - +0.6
1,086,610 - +0.8
1,086,739 + HP15_1062 0.22 -0.8
1,086,747 - HP15_1062 0.23 +1.3
1,086,820 - HP15_1062 0.31 -0.8
1,086,840 - HP15_1062 0.34 -1.9
1,086,974 - HP15_1062 0.49 -0.5
1,087,161 + HP15_1062 0.72 -0.7
1,087,277 + HP15_1062 0.85 -0.0
1,087,332 + -1.1
1,087,446 + +0.7
1,087,808 - HP15_1063 0.83 +0.3
1,087,851 + +0.0
1,087,935 - -2.3
1,088,184 + HP15_1064 0.39 +0.0

Or see this region's nucleotide sequence