Strain Fitness in Marinobacter adhaerens HP15 around HP15_1030

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1029 and HP15_1030 are separated by 164 nucleotidesHP15_1030 and HP15_1031 are separated by 1 nucleotidesHP15_1031 and HP15_1032 overlap by 4 nucleotides HP15_1029: HP15_1029 - conserved hypothetical protein, membrane, at 1,046,645 to 1,047,925 _1029 HP15_1030: HP15_1030 - sulfate permease family protein, at 1,048,090 to 1,049,577 _1030 HP15_1031: HP15_1031 - UspA domain protein, at 1,049,579 to 1,050,505 _1031 HP15_1032: HP15_1032 - phospholipase, patatin family, at 1,050,502 to 1,051,368 _1032 Position (kb) 1048 1049 1050Strain fitness (log2 ratio) -3 -2 -1 0 1at 1047.090 kb on + strand, within HP15_1029at 1047.090 kb on + strand, within HP15_1029at 1047.103 kb on - strand, within HP15_1029at 1047.112 kb on - strand, within HP15_1029at 1047.210 kb on - strand, within HP15_1029at 1047.599 kb on + strand, within HP15_1029at 1047.599 kb on + strand, within HP15_1029at 1047.607 kb on - strand, within HP15_1029at 1047.649 kb on - strand, within HP15_1029at 1047.687 kb on + strand, within HP15_1029at 1047.692 kb on + strand, within HP15_1029at 1047.772 kb on - strand, within HP15_1029at 1047.777 kb on - strand, within HP15_1029at 1047.819 kb on - strandat 1047.822 kb on + strandat 1047.830 kb on - strandat 1047.830 kb on - strandat 1047.875 kb on + strandat 1047.920 kb on + strandat 1047.949 kb on - strandat 1048.148 kb on - strandat 1048.509 kb on - strand, within HP15_1030at 1048.593 kb on + strand, within HP15_1030at 1048.606 kb on + strand, within HP15_1030at 1048.644 kb on + strand, within HP15_1030at 1048.734 kb on + strand, within HP15_1030at 1048.766 kb on - strand, within HP15_1030at 1048.784 kb on - strand, within HP15_1030at 1048.846 kb on - strand, within HP15_1030at 1048.848 kb on + strand, within HP15_1030at 1048.867 kb on + strand, within HP15_1030at 1048.867 kb on + strand, within HP15_1030at 1048.867 kb on + strand, within HP15_1030at 1048.875 kb on - strand, within HP15_1030at 1048.875 kb on - strand, within HP15_1030at 1048.875 kb on - strand, within HP15_1030at 1048.907 kb on - strand, within HP15_1030at 1049.180 kb on + strand, within HP15_1030at 1049.195 kb on + strand, within HP15_1030at 1049.208 kb on - strand, within HP15_1030at 1049.232 kb on - strand, within HP15_1030at 1049.314 kb on + strand, within HP15_1030at 1049.439 kb on + strandat 1049.442 kb on - strandat 1049.447 kb on - strandat 1049.447 kb on - strandat 1049.447 kb on - strandat 1050.010 kb on - strand, within HP15_1031at 1050.027 kb on - strand, within HP15_1031at 1050.034 kb on - strand, within HP15_1031at 1050.179 kb on + strand, within HP15_1031at 1050.187 kb on - strand, within HP15_1031at 1050.247 kb on + strand, within HP15_1031at 1050.255 kb on - strand, within HP15_1031at 1050.270 kb on + strand, within HP15_1031at 1050.288 kb on - strand, within HP15_1031at 1050.457 kb on - strandat 1050.530 kb on + strandat 1050.530 kb on + strandat 1050.530 kb on + strandat 1050.543 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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1,047,090 + HP15_1029 0.35 +0.3
1,047,090 + HP15_1029 0.35 +0.3
1,047,103 - HP15_1029 0.36 +0.6
1,047,112 - HP15_1029 0.36 -0.3
1,047,210 - HP15_1029 0.44 +0.2
1,047,599 + HP15_1029 0.74 +0.0
1,047,599 + HP15_1029 0.74 -0.1
1,047,607 - HP15_1029 0.75 -0.8
1,047,649 - HP15_1029 0.78 +0.1
1,047,687 + HP15_1029 0.81 -0.3
1,047,692 + HP15_1029 0.82 -0.2
1,047,772 - HP15_1029 0.88 +0.4
1,047,777 - HP15_1029 0.88 -0.2
1,047,819 - -0.7
1,047,822 + -0.9
1,047,830 - +0.7
1,047,830 - -0.7
1,047,875 + -0.5
1,047,920 + +0.0
1,047,949 - -1.7
1,048,148 - -2.7
1,048,509 - HP15_1030 0.28 -0.8
1,048,593 + HP15_1030 0.34 -0.5
1,048,606 + HP15_1030 0.35 -1.6
1,048,644 + HP15_1030 0.37 -1.2
1,048,734 + HP15_1030 0.43 +0.8
1,048,766 - HP15_1030 0.45 -1.1
1,048,784 - HP15_1030 0.47 +0.4
1,048,846 - HP15_1030 0.51 -0.7
1,048,848 + HP15_1030 0.51 -0.5
1,048,867 + HP15_1030 0.52 +0.4
1,048,867 + HP15_1030 0.52 -1.2
1,048,867 + HP15_1030 0.52 +0.0
1,048,875 - HP15_1030 0.53 -1.9
1,048,875 - HP15_1030 0.53 -1.1
1,048,875 - HP15_1030 0.53 +0.4
1,048,907 - HP15_1030 0.55 -1.2
1,049,180 + HP15_1030 0.73 -0.5
1,049,195 + HP15_1030 0.74 -2.3
1,049,208 - HP15_1030 0.75 -1.2
1,049,232 - HP15_1030 0.77 -1.3
1,049,314 + HP15_1030 0.82 -2.9
1,049,439 + +0.1
1,049,442 - -2.2
1,049,447 - +0.7
1,049,447 - -0.4
1,049,447 - -0.5
1,050,010 - HP15_1031 0.46 -1.4
1,050,027 - HP15_1031 0.48 -0.2
1,050,034 - HP15_1031 0.49 -0.1
1,050,179 + HP15_1031 0.65 +0.1
1,050,187 - HP15_1031 0.66 -1.8
1,050,247 + HP15_1031 0.72 -0.6
1,050,255 - HP15_1031 0.73 -0.3
1,050,270 + HP15_1031 0.75 -0.0
1,050,288 - HP15_1031 0.76 +0.1
1,050,457 - +0.7
1,050,530 + -0.3
1,050,530 + -3.0
1,050,530 + -0.3
1,050,543 - +0.9

Or see this region's nucleotide sequence