Strain Fitness in Shewanella amazonensis SB2B around Sama_2933

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,485,061	+				-1.5
3,485,064	-				-0.2
3,485,064	-				-0.5
3,485,065	+				-0.8
3,485,066	-				-0.9
3,485,120	-				+2.3
3,485,160	+				+0.3
3,485,160	+				-0.7
3,485,160	+				-1.2
3,485,161	-				-0.3
3,485,161	-				-1.2
3,485,161	-				-0.3
3,485,161	-				-0.7
3,485,161	-				+1.7
3,485,458	+		Sama_2932	0.39	-0.8
3,485,458	+		Sama_2932	0.39	-1.7
3,485,458	+		Sama_2932	0.39	+1.0
3,485,458	+		Sama_2932	0.39	-0.1
3,485,458	+		Sama_2932	0.39	-1.9
3,485,459	-		Sama_2932	0.39	-0.0
3,485,459	-		Sama_2932	0.39	+2.4
3,485,459	-		Sama_2932	0.39	-0.3
3,485,459	-		Sama_2932	0.39	-2.6
3,485,557	+		Sama_2932	0.54	-0.5
3,485,557	+		Sama_2932	0.54	-1.3
3,485,557	+		Sama_2932	0.54	-2.9
3,485,557	+		Sama_2932	0.54	+0.4
3,485,557	+		Sama_2932	0.54	-0.8
3,485,557	+		Sama_2932	0.54	-2.6
3,485,558	-		Sama_2932	0.54	+0.4
3,485,581	+		Sama_2932	0.58	-1.3
3,485,581	+		Sama_2932	0.58	+1.5
3,485,581	+		Sama_2932	0.58	-0.2
3,485,582	-		Sama_2932	0.58	-1.4
3,485,582	-		Sama_2932	0.58	-0.2
3,485,582	-		Sama_2932	0.58	+2.7
3,485,582	-		Sama_2932	0.58	+0.2
3,485,582	-		Sama_2932	0.58	-3.5
3,485,592	-		Sama_2932	0.59	-2.3
3,485,592	-		Sama_2932	0.59	+1.3
3,485,592	-		Sama_2932	0.59	-0.6
3,485,592	-		Sama_2932	0.59	-1.8
3,485,633	+		Sama_2932	0.66	+0.2
3,485,633	+		Sama_2932	0.66	+0.7
3,485,633	+		Sama_2932	0.66	+0.5
3,485,633	+		Sama_2932	0.66	+1.0
3,485,634	-		Sama_2932	0.66	+1.4
3,485,634	-		Sama_2932	0.66	+0.6
3,485,634	-		Sama_2932	0.66	-2.5
3,485,634	-		Sama_2932	0.66	-2.5
3,485,888	+				+1.5
3,485,923	-				-1.1
3,485,923	-				-0.6
3,485,923	-				-0.2
3,485,926	+				+1.4
3,485,960	+				+1.2
3,485,960	+				-0.1
3,486,030	-				-1.2
3,486,047	-				+1.4
3,486,160	+		Sama_2933	0.25	-1.4
3,486,161	-		Sama_2933	0.25	+0.7
3,486,161	-		Sama_2933	0.25	-1.9
3,486,201	-		Sama_2933	0.31	-2.4
3,486,201	-		Sama_2933	0.31	+0.4
3,486,268	+		Sama_2933	0.42	-1.6
3,486,269	-		Sama_2933	0.42	-1.2
3,486,288	-		Sama_2933	0.45	+0.6
3,486,288	-		Sama_2933	0.45	+2.1
3,486,293	+		Sama_2933	0.45	-0.7
3,486,326	+		Sama_2933	0.51	-0.1
3,486,357	+		Sama_2933	0.55	-2.6
3,486,357	+		Sama_2933	0.55	+0.5
3,486,357	+		Sama_2933	0.55	-1.4
3,486,357	+		Sama_2933	0.55	-0.2
3,486,358	-		Sama_2933	0.55	-1.3
3,486,358	-		Sama_2933	0.55	-2.2
3,486,358	-		Sama_2933	0.55	+1.6
3,486,358	-		Sama_2933	0.55	-1.4
3,486,358	-		Sama_2933	0.55	+0.3
3,486,358	-		Sama_2933	0.55	-1.7
3,486,360	+		Sama_2933	0.56	-2.7
3,486,360	+		Sama_2933	0.56	-2.5
3,486,360	+		Sama_2933	0.56	+3.6
3,486,361	-		Sama_2933	0.56	-0.9
3,486,361	-		Sama_2933	0.56	-0.2
3,486,361	-		Sama_2933	0.56	-1.5
3,486,378	+		Sama_2933	0.59	-0.2
3,486,379	-		Sama_2933	0.59	+1.1
3,486,433	-		Sama_2933	0.67	+0.9
3,486,441	+		Sama_2933	0.68	-0.2
3,486,441	+		Sama_2933	0.68	+2.2
3,486,441	+		Sama_2933	0.68	-0.6
3,486,441	+		Sama_2933	0.68	-1.2
3,486,441	+		Sama_2933	0.68	-0.2
3,486,442	-		Sama_2933	0.68	+0.9
3,486,442	-		Sama_2933	0.68	-1.4
3,486,442	-		Sama_2933	0.68	-0.6
3,486,442	-		Sama_2933	0.68	-1.6
3,486,442	-		Sama_2933	0.68	-1.8
3,486,445	+		Sama_2933	0.69	+1.1
3,486,445	+		Sama_2933	0.69	+0.8
3,486,445	+		Sama_2933	0.69	+0.4
3,486,445	+		Sama_2933	0.69	+1.7
3,486,445	+		Sama_2933	0.69	-0.5
3,486,445	+		Sama_2933	0.69	+0.4
3,486,445	+		Sama_2933	0.69	-1.4
3,486,446	-		Sama_2933	0.69	+0.9
3,486,446	-		Sama_2933	0.69	-0.9
3,486,446	-		Sama_2933	0.69	-1.0
3,486,446	-		Sama_2933	0.69	-0.2
3,486,446	-		Sama_2933	0.69	+3.4
3,486,446	-		Sama_2933	0.69	-0.6
3,486,446	-		Sama_2933	0.69	+2.4
3,486,446	-		Sama_2933	0.69	-1.6
3,486,446	-		Sama_2933	0.69	-0.2
3,486,446	-		Sama_2933	0.69	-0.8
3,486,446	-		Sama_2933	0.69	-1.2
3,486,446	-		Sama_2933	0.69	+3.4
3,486,446	-		Sama_2933	0.69	-1.6
3,486,446	-		Sama_2933	0.69	+0.6
3,486,645	+				-2.3
3,486,645	+				+2.3
3,486,645	+				-0.2
3,486,645	+				+1.8
3,486,645	+				+1.5
3,486,646	-				-0.1
3,486,646	-				-0.3
3,486,646	-				-1.9
3,486,646	-				+2.1
3,486,646	-				-2.2
3,486,649	+				+1.6
3,486,650	-				-0.9
3,486,679	+				-1.2
3,486,696	+				+1.2
3,486,696	+				-1.3
3,486,697	-				-1.6
3,486,697	-				-1.6
3,486,697	-				+1.6
3,486,729	-				+1.1
3,486,729	-				-1.9
3,486,729	-				-2.3
3,486,732	+				+1.1
3,486,732	+				+1.6
3,486,733	-				+2.0
3,486,733	-				-1.0
3,486,782	-				+2.4
3,486,806	+				-0.9
3,486,891	+		Sama_2934	0.11	+0.1
3,486,891	+		Sama_2934	0.11	+0.7
3,486,891	+		Sama_2934	0.11	-0.4
3,486,891	+		Sama_2934	0.11	-3.6
3,486,891	+		Sama_2934	0.11	-1.5
3,486,892	-		Sama_2934	0.11	+1.4
3,486,892	-		Sama_2934	0.11	+0.6
3,486,892	-		Sama_2934	0.11	+0.7
3,486,892	-		Sama_2934	0.11	+0.4
3,486,955	-		Sama_2934	0.20	-0.2
3,486,955	-		Sama_2934	0.20	-1.6
3,486,955	-		Sama_2934	0.20	+0.2
3,486,974	+		Sama_2934	0.22	+1.6
3,486,974	+		Sama_2934	0.22	-0.9
3,486,974	+		Sama_2934	0.22	-1.2
3,486,974	+		Sama_2934	0.22	-0.6
3,486,975	-		Sama_2934	0.22	+1.6
3,486,975	-		Sama_2934	0.22	-0.6
3,486,987	+		Sama_2934	0.24	-1.6
3,486,987	+		Sama_2934	0.24	-1.7
3,486,987	+		Sama_2934	0.24	-1.6
3,486,987	+		Sama_2934	0.24	-1.4
3,486,988	-		Sama_2934	0.24	-1.3
3,486,988	-		Sama_2934	0.24	-0.9
3,486,988	-		Sama_2934	0.24	+0.8
3,486,988	-		Sama_2934	0.24	-0.3
3,486,988	-		Sama_2934	0.24	-0.9
3,486,988	-		Sama_2934	0.24	+3.7
3,487,052	+		Sama_2934	0.33	+0.2
3,487,053	-		Sama_2934	0.33	-1.4
3,487,066	+		Sama_2934	0.35	-0.8
3,487,066	+		Sama_2934	0.35	+2.2
3,487,066	+		Sama_2934	0.35	-1.4
3,487,066	+		Sama_2934	0.35	-1.2
3,487,066	+		Sama_2934	0.35	-2.4
3,487,067	-		Sama_2934	0.35	+2.9
3,487,067	-		Sama_2934	0.35	+1.0
3,487,067	-		Sama_2934	0.35	-0.4
3,487,067	-		Sama_2934	0.35	-0.8
3,487,067	-		Sama_2934	0.35	-0.9
3,487,067	-		Sama_2934	0.35	+0.4
3,487,067	-		Sama_2934	0.35	-1.2
3,487,067	-		Sama_2934	0.35	-1.2
3,487,067	-		Sama_2934	0.35	+1.4
3,487,067	-		Sama_2934	0.35	-0.6
3,487,070	+		Sama_2934	0.35	-2.5
3,487,070	+		Sama_2934	0.35	-0.2
3,487,148	+		Sama_2934	0.46	-0.6
3,487,246	+		Sama_2934	0.59	+0.8
3,487,263	-		Sama_2934	0.61	-2.7
3,487,263	-		Sama_2934	0.61	+0.1
3,487,279	-		Sama_2934	0.63	-1.8
3,487,279	-		Sama_2934	0.63	+0.4
3,487,385	+		Sama_2934	0.77	-1.6
3,487,385	+		Sama_2934	0.77	-1.6
3,487,385	+		Sama_2934	0.77	-2.7
3,487,385	+		Sama_2934	0.77	+0.5
3,487,385	+		Sama_2934	0.77	-1.4
3,487,385	+		Sama_2934	0.77	+0.0
3,487,385	+		Sama_2934	0.77	-0.9
3,487,385	+		Sama_2934	0.77	-2.7
3,487,385	+		Sama_2934	0.77	-1.5
3,487,386	-		Sama_2934	0.78	-2.2
3,487,386	-		Sama_2934	0.78	-0.6
3,487,386	-		Sama_2934	0.78	+0.4
3,487,386	-		Sama_2934	0.78	+0.4
3,487,386	-		Sama_2934	0.78	-1.4
3,487,386	-		Sama_2934	0.78	-1.7
3,487,389	+		Sama_2934	0.78	+0.9
3,487,390	-		Sama_2934	0.78	+0.4
3,487,390	-		Sama_2934	0.78	-1.1
3,487,442	+		Sama_2934	0.85	-0.9
3,487,442	+		Sama_2934	0.85	-1.5
3,487,442	+		Sama_2934	0.85	+1.2
3,487,442	+		Sama_2934	0.85	-2.3
3,487,442	+		Sama_2934	0.85	-1.2
3,487,442	+		Sama_2934	0.85	-2.3
3,487,442	+		Sama_2934	0.85	-0.1
3,487,442	+		Sama_2934	0.85	-0.3
3,487,443	-		Sama_2934	0.85	+4.0
3,487,443	-		Sama_2934	0.85	+0.5
3,487,443	-		Sama_2934	0.85	-1.1
3,487,443	-		Sama_2934	0.85	+1.4
3,487,447	-		Sama_2934	0.86	+0.0
3,487,447	-		Sama_2934	0.86	+2.6
3,487,447	-		Sama_2934	0.86	+0.4
3,487,552	-				-0.3
3,487,552	-				-0.4
3,487,582	-				-3.2
3,487,582	-				-0.9
3,487,582	-				+0.8