Strain Fitness in Shewanella amazonensis SB2B around Sama_2924

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,477,461	+				+2.2
3,477,461	+				+1.5
3,477,461	+				+0.6
3,477,526	+				+0.3
3,477,549	-				-2.2
3,477,549	-				+0.3
3,477,575	+				-0.2
3,477,575	+				-1.2
3,477,576	-				+3.9
3,477,576	-				-0.2
3,477,576	-				+0.0
3,477,576	-				-1.4
3,477,576	-				+1.2
3,477,588	+				+1.0
3,477,588	+				-0.2
3,477,589	-				-1.2
3,477,605	+				-3.2
3,477,616	+				-0.6
3,477,616	+				-1.8
3,477,618	+				+1.9
3,477,618	+				-2.3
3,477,618	+				-0.2
3,477,618	+				-0.8
3,477,618	+				+1.1
3,477,619	-				-1.7
3,477,619	-				-1.6
3,477,619	-				+1.0
3,477,619	-				+0.4
3,477,627	+				+1.4
3,477,627	+				+0.7
3,477,628	-				-4.0
3,477,628	-				+0.4
3,477,628	-				+0.4
3,477,628	-				-2.5
3,477,631	+				-1.2
3,477,675	-				+0.8
3,477,675	-				-0.0
3,477,741	+		Sama_2923	0.20	+0.5
3,477,741	+		Sama_2923	0.20	-0.2
3,477,741	+		Sama_2923	0.20	+0.4
3,477,741	+		Sama_2923	0.20	-0.9
3,477,741	+		Sama_2923	0.20	+1.0
3,477,742	-		Sama_2923	0.20	-1.4
3,477,742	-		Sama_2923	0.20	-0.5
3,477,742	-		Sama_2923	0.20	+0.9
3,477,742	-		Sama_2923	0.20	-2.4
3,477,742	-		Sama_2923	0.20	+1.8
3,477,744	+		Sama_2923	0.21	-0.2
3,477,745	-		Sama_2923	0.21	+0.8
3,477,745	-		Sama_2923	0.21	-0.2
3,477,755	+		Sama_2923	0.23	-0.6
3,477,783	+		Sama_2923	0.28	+1.7
3,477,783	+		Sama_2923	0.28	+1.0
3,477,783	+		Sama_2923	0.28	+0.3
3,477,783	+		Sama_2923	0.28	+1.1
3,477,783	+		Sama_2923	0.28	-1.5
3,477,783	+		Sama_2923	0.28	-1.8
3,477,783	+		Sama_2923	0.28	-1.4
3,477,784	-		Sama_2923	0.28	+1.6
3,477,784	-		Sama_2923	0.28	+4.2
3,477,784	-		Sama_2923	0.28	+1.4
3,477,784	-		Sama_2923	0.28	-1.4
3,477,784	-		Sama_2923	0.28	-2.0
3,477,786	+		Sama_2923	0.28	+2.7
3,477,786	+		Sama_2923	0.28	+1.8
3,477,786	+		Sama_2923	0.28	-1.6
3,477,787	-		Sama_2923	0.28	-1.2
3,477,787	-		Sama_2923	0.28	+1.5
3,477,799	+		Sama_2923	0.31	-1.8
3,477,881	+		Sama_2923	0.45	-1.0
3,477,881	+		Sama_2923	0.45	+1.4
3,477,881	+		Sama_2923	0.45	+1.8
3,477,881	+		Sama_2923	0.45	+3.6
3,477,881	+		Sama_2923	0.45	-0.6
3,477,882	-		Sama_2923	0.45	+0.7
3,477,882	-		Sama_2923	0.45	+1.2
3,477,882	-		Sama_2923	0.45	-0.9
3,477,882	-		Sama_2923	0.45	-0.0
3,477,882	-		Sama_2923	0.45	-0.6
3,477,882	-		Sama_2923	0.45	+0.7
3,477,933	+		Sama_2923	0.54	-1.8
3,477,933	+		Sama_2923	0.54	+1.4
3,477,933	+		Sama_2923	0.54	+0.5
3,477,933	+		Sama_2923	0.54	-1.8
3,477,933	+		Sama_2923	0.54	-2.1
3,477,933	+		Sama_2923	0.54	-0.2
3,477,933	+		Sama_2923	0.54	+1.8
3,477,933	+		Sama_2923	0.54	+1.5
3,477,933	+		Sama_2923	0.54	+2.6
3,477,933	+		Sama_2923	0.54	-0.9
3,477,933	+		Sama_2923	0.54	-0.2
3,477,933	+		Sama_2923	0.54	-1.4
3,477,933	+		Sama_2923	0.54	+0.4
3,477,933	+		Sama_2923	0.54	-0.9
3,477,933	+		Sama_2923	0.54	+1.0
3,477,934	-		Sama_2923	0.54	+2.1
3,477,934	-		Sama_2923	0.54	-0.2
3,477,934	-		Sama_2923	0.54	+1.8
3,477,934	-		Sama_2923	0.54	-0.9
3,477,934	-		Sama_2923	0.54	-0.2
3,477,934	-		Sama_2923	0.54	-1.6
3,477,934	-		Sama_2923	0.54	+1.4
3,477,934	-		Sama_2923	0.54	+1.8
3,477,934	-		Sama_2923	0.54	-0.2
3,477,934	-		Sama_2923	0.54	-0.8
3,477,934	-		Sama_2923	0.54	+0.6
3,477,934	-		Sama_2923	0.54	+1.3
3,477,934	-		Sama_2923	0.54	+0.8
3,477,976	+		Sama_2923	0.62	-0.7
3,477,977	-		Sama_2923	0.62	+1.8
3,477,977	-		Sama_2923	0.62	+2.8
3,477,981	-		Sama_2923	0.63	+1.7
3,477,981	-		Sama_2923	0.63	-2.1
3,477,981	-		Sama_2923	0.63	+3.4
3,477,981	-		Sama_2923	0.63	-0.4
3,477,981	-		Sama_2923	0.63	-0.9
3,477,987	+		Sama_2923	0.64	+0.5
3,477,987	+		Sama_2923	0.64	+1.1
3,477,987	+		Sama_2923	0.64	-2.1
3,477,987	+		Sama_2923	0.64	+0.6
3,477,987	+		Sama_2923	0.64	-0.4
3,477,988	-		Sama_2923	0.64	+1.9
3,477,990	+		Sama_2923	0.64	+0.8
3,477,990	+		Sama_2923	0.64	+0.6
3,477,990	+		Sama_2923	0.64	-2.0
3,477,990	+		Sama_2923	0.64	+1.4
3,477,990	+		Sama_2923	0.64	+0.8
3,477,990	+		Sama_2923	0.64	+0.4
3,477,991	-		Sama_2923	0.64	-0.6
3,477,991	-		Sama_2923	0.64	-0.6
3,478,000	+		Sama_2923	0.66	-0.2
3,478,000	+		Sama_2923	0.66	-1.6
3,478,000	+		Sama_2923	0.66	+2.4
3,478,001	-		Sama_2923	0.66	+0.8
3,478,044	+		Sama_2923	0.74	-0.9
3,478,044	+		Sama_2923	0.74	-0.4
3,478,044	+		Sama_2923	0.74	+2.2
3,478,045	-		Sama_2923	0.74	+1.1
3,478,065	-		Sama_2923	0.77	+0.4
3,478,065	-		Sama_2923	0.77	+1.2
3,478,065	-		Sama_2923	0.77	-2.5
3,478,122	+		Sama_2923	0.87	-1.6
3,478,122	+		Sama_2923	0.87	-0.9
3,478,122	+		Sama_2923	0.87	-0.6
3,478,123	-		Sama_2923	0.88	+0.7
3,478,172	-				+0.3
3,478,176	+				-2.5
3,478,176	+				+0.4
3,478,176	+				-1.3
3,478,176	+				+0.8
3,478,176	+				-3.5
3,478,176	+				-0.6
3,478,177	-				+1.5
3,478,177	-				+4.5
3,478,177	-				+3.2
3,478,177	-				+0.2
3,478,177	-				-0.6
3,478,177	-				-0.9
3,478,192	+				+0.3
3,478,192	+				-0.7
3,478,192	+				+0.2
3,478,192	+				-1.2
3,478,193	-				-0.4
3,478,193	-				-2.6
3,478,193	-				+0.4
3,478,193	-				+0.2
3,478,193	-				+0.2
3,478,212	+				+0.1
3,478,212	+				+1.7
3,478,212	+				+1.2
3,478,212	+				+0.7
3,478,213	-				+0.2
3,478,213	-				-1.2
3,478,213	-				+2.4
3,478,213	-				-1.8
3,478,282	+				+0.5
3,478,283	-				-2.2
3,478,316	+				-0.4
3,478,317	-				+1.2
3,478,410	-				+0.1
3,478,410	-				-0.1
3,478,423	+				-2.4
3,478,508	+				-2.4
3,478,509	-				-0.9
3,478,509	-				+0.1
3,478,509	-				-1.6
3,478,550	-				-0.6
3,478,550	-				+1.7
3,478,550	-				-0.2
3,478,554	+				-0.4
3,478,554	+				+0.2
3,478,652	+		Sama_2924	0.14	-0.8
3,478,653	-		Sama_2924	0.14	-0.7
3,478,653	-		Sama_2924	0.14	+0.1
3,478,653	-		Sama_2924	0.14	+0.3
3,478,653	-		Sama_2924	0.14	-3.5
3,478,653	-		Sama_2924	0.14	-1.4
3,478,653	-		Sama_2924	0.14	-0.2
3,478,653	-		Sama_2924	0.14	-1.9
3,478,653	-		Sama_2924	0.14	-0.6
3,478,653	-		Sama_2924	0.14	-1.1
3,478,655	+		Sama_2924	0.14	-0.5
3,478,655	+		Sama_2924	0.14	+0.5
3,478,655	+		Sama_2924	0.14	-2.3
3,478,656	-		Sama_2924	0.14	+1.8
3,478,656	-		Sama_2924	0.14	+1.0
3,478,656	-		Sama_2924	0.14	-2.1
3,478,656	-		Sama_2924	0.14	+1.4
3,478,656	-		Sama_2924	0.14	+0.2
3,478,752	+		Sama_2924	0.19	-0.7
3,478,821	-		Sama_2924	0.23	+2.1
3,478,827	-		Sama_2924	0.24	+0.6
3,478,850	+		Sama_2924	0.25	+2.7
3,478,850	+		Sama_2924	0.25	+0.5
3,478,850	+		Sama_2924	0.25	+0.4
3,478,851	-		Sama_2924	0.25	+1.4
3,478,851	-		Sama_2924	0.25	-3.1
3,478,851	-		Sama_2924	0.25	+0.5
3,478,899	+		Sama_2924	0.28	-1.6
3,478,899	+		Sama_2924	0.28	-1.6
3,478,899	+		Sama_2924	0.28	+2.0
3,478,899	+		Sama_2924	0.28	-0.7
3,478,900	-		Sama_2924	0.28	-1.2
3,478,900	-		Sama_2924	0.28	-1.6
3,478,900	-		Sama_2924	0.28	-1.6
3,478,900	-		Sama_2924	0.28	+0.7
3,478,900	-		Sama_2924	0.28	-3.3
3,478,919	+		Sama_2924	0.29	-2.1
3,478,919	+		Sama_2924	0.29	-1.2
3,478,920	-		Sama_2924	0.29	+0.7
3,478,944	+		Sama_2924	0.30	+0.9
3,479,010	+		Sama_2924	0.34	-1.4
3,479,010	+		Sama_2924	0.34	-0.6
3,479,010	+		Sama_2924	0.34	+1.2
3,479,011	-		Sama_2924	0.34	+0.2
3,479,077	+		Sama_2924	0.38	+1.1
3,479,077	+		Sama_2924	0.38	+0.1
3,479,216	+		Sama_2924	0.46	+0.8
3,479,217	-		Sama_2924	0.46	+0.8
3,479,217	-		Sama_2924	0.46	-0.2
3,479,279	-		Sama_2924	0.49	+2.1
3,479,344	-		Sama_2924	0.53	+4.2
3,479,360	+		Sama_2924	0.54	-1.2
3,479,360	+		Sama_2924	0.54	-1.9
3,479,360	+		Sama_2924	0.54	-3.2
3,479,361	-		Sama_2924	0.54	+0.5
3,479,361	-		Sama_2924	0.54	-1.4
3,479,361	-		Sama_2924	0.54	+0.8
3,479,382	+		Sama_2924	0.55	-1.2
3,479,446	-		Sama_2924	0.59	+1.7
3,479,472	+		Sama_2924	0.60	-1.9
3,479,473	-		Sama_2924	0.60	+0.0
3,479,473	-		Sama_2924	0.60	-0.6
3,479,473	-		Sama_2924	0.60	-0.3
3,479,473	-		Sama_2924	0.60	-1.7
3,479,473	-		Sama_2924	0.60	+2.1
3,479,473	-		Sama_2924	0.60	+0.4
3,479,473	-		Sama_2924	0.60	+0.2
3,479,473	-		Sama_2924	0.60	-0.9
3,479,475	+		Sama_2924	0.60	-0.5
3,479,475	+		Sama_2924	0.60	-0.9
3,479,475	+		Sama_2924	0.60	+0.9
3,479,475	+		Sama_2924	0.60	+0.3
3,479,475	+		Sama_2924	0.60	-1.7
3,479,476	-		Sama_2924	0.60	+1.5
3,479,476	-		Sama_2924	0.60	+1.9
3,479,523	-		Sama_2924	0.63	-0.6
3,479,523	-		Sama_2924	0.63	+3.0
3,479,538	+		Sama_2924	0.64	-2.7
3,479,539	-		Sama_2924	0.64	+1.2
3,479,543	+		Sama_2924	0.64	-0.2
3,479,543	+		Sama_2924	0.64	-2.1
3,479,578	+		Sama_2924	0.66	-0.6
3,479,578	+		Sama_2924	0.66	+0.7
3,479,578	+		Sama_2924	0.66	-1.6
3,479,579	-		Sama_2924	0.66	-0.7
3,479,579	-		Sama_2924	0.66	-0.3
3,479,579	-		Sama_2924	0.66	-1.4
3,479,630	+		Sama_2924	0.69	-3.1
3,479,636	+		Sama_2924	0.69	-1.9
3,479,636	+		Sama_2924	0.69	-0.3
3,479,636	+		Sama_2924	0.69	+0.4
3,479,636	+		Sama_2924	0.69	+0.4
3,479,636	+		Sama_2924	0.69	-0.6
3,479,636	+		Sama_2924	0.69	+1.4
3,479,637	-		Sama_2924	0.69	+0.2
3,479,637	-		Sama_2924	0.69	+2.4
3,479,637	-		Sama_2924	0.69	+0.6
3,479,637	-		Sama_2924	0.69	+4.7
3,479,640	+		Sama_2924	0.70	-0.4
3,479,640	+		Sama_2924	0.70	+1.1
3,479,640	+		Sama_2924	0.70	+0.2
3,479,640	+		Sama_2924	0.70	-2.3
3,479,640	+		Sama_2924	0.70	-1.3
3,479,640	+		Sama_2924	0.70	+0.2
3,479,640	+		Sama_2924	0.70	+1.0
3,479,640	+		Sama_2924	0.70	+0.4
3,479,640	+		Sama_2924	0.70	-0.0
3,479,641	-		Sama_2924	0.70	+0.9
3,479,642	+		Sama_2924	0.70	-0.1
3,479,642	+		Sama_2924	0.70	-0.7
3,479,642	+		Sama_2924	0.70	-1.5
3,479,642	+		Sama_2924	0.70	-2.3
3,479,642	+		Sama_2924	0.70	+2.6
3,479,642	+		Sama_2924	0.70	-2.9
3,479,642	+		Sama_2924	0.70	+0.6
3,479,642	+		Sama_2924	0.70	-1.4
3,479,642	+		Sama_2924	0.70	+1.4
3,479,642	+		Sama_2924	0.70	+0.9
3,479,642	+		Sama_2924	0.70	-1.7
3,479,643	-		Sama_2924	0.70	-1.1
3,479,643	-		Sama_2924	0.70	-3.1
3,479,643	-		Sama_2924	0.70	-0.9
3,479,643	-		Sama_2924	0.70	-0.4
3,479,643	-		Sama_2924	0.70	-1.8
3,479,697	-		Sama_2924	0.73	-0.6
3,479,817	+		Sama_2924	0.80	-0.5
3,479,818	-		Sama_2924	0.80	-0.2
3,479,818	-		Sama_2924	0.80	-2.0
3,479,828	+		Sama_2924	0.80	+3.9
3,479,828	+		Sama_2924	0.80	-0.5
3,479,829	-		Sama_2924	0.80	-1.2
3,479,829	-		Sama_2924	0.80	+1.0
3,479,831	+		Sama_2924	0.80	+0.5
3,479,831	+		Sama_2924	0.80	-0.9
3,479,831	+		Sama_2924	0.80	+0.7
3,479,831	+		Sama_2924	0.80	+0.7
3,479,832	-		Sama_2924	0.80	+0.8
3,479,832	-		Sama_2924	0.80	-0.2
3,479,832	-		Sama_2924	0.80	-1.2
3,479,832	-		Sama_2924	0.80	-1.2
3,479,832	-		Sama_2924	0.80	-3.1
3,479,832	-		Sama_2924	0.80	-0.2
3,479,876	+		Sama_2924	0.83	+1.1
3,479,876	+		Sama_2924	0.83	+0.7
3,479,877	-		Sama_2924	0.83	-0.2
3,479,889	+		Sama_2924	0.84	+0.9
3,479,889	+		Sama_2924	0.84	+2.2
3,479,889	+		Sama_2924	0.84	+0.3
3,479,889	+		Sama_2924	0.84	-0.6
3,480,164	+				-0.3
3,480,165	-				+1.8
3,480,178	+				+0.4
3,480,179	-				-0.4
3,480,179	-				+2.0
3,480,181	+				-0.2
3,480,182	-				-2.4
3,480,184	+				-0.6
3,480,184	+				+4.0
3,480,196	+				-1.2
3,480,196	+				-0.0
3,480,196	+				-1.0
3,480,196	+				-3.0
3,480,196	+				+0.7
3,480,196	+				+0.5
3,480,197	-				-1.2
3,480,198	+				-0.2
3,480,198	+				-0.2
3,480,198	+				-0.6
3,480,198	+				+2.1
3,480,198	+				-1.5
3,480,198	+				+1.2
3,480,198	+				+0.6
3,480,199	-				+0.9
3,480,199	-				+0.2
3,480,199	-				+1.3
3,480,207	+				+0.0
3,480,207	+				+0.9
3,480,207	+				-2.6
3,480,207	+				-0.9
3,480,207	+				+1.4
3,480,207	+				-0.9
3,480,207	+				-1.4
3,480,208	-				+1.7
3,480,208	-				+0.1
3,480,208	-				-1.9
3,480,208	-				-0.2
3,480,208	-				-1.4
3,480,208	-				-1.2
3,480,208	-				-0.9
3,480,239	+				+1.4
3,480,240	-				+1.3
3,480,242	+				-0.2
3,480,243	-				+2.9
3,480,243	-				-1.4
3,480,268	-				-2.5
3,480,317	+				-0.2
3,480,317	+				-0.7
3,480,317	+				+0.1
3,480,317	+				+0.7
3,480,317	+				-1.9
3,480,317	+				-1.2
3,480,317	+				-2.6
3,480,376	+				+0.9
3,480,376	+				+0.5
3,480,376	+				-1.6
3,480,376	+				+1.1
3,480,377	-				+0.1
3,480,377	-				+2.5
3,480,385	+				+0.7
3,480,489	+		Sama_2925	0.27	-0.7
3,480,490	-		Sama_2925	0.27	-1.6
3,480,490	-		Sama_2925	0.27	-1.6
3,480,509	+		Sama_2925	0.31	+2.1
3,480,509	+		Sama_2925	0.31	+0.8
3,480,510	-		Sama_2925	0.32	-1.6
3,480,510	-		Sama_2925	0.32	-3.1
3,480,510	-		Sama_2925	0.32	+1.4
3,480,569	+		Sama_2925	0.46	+1.7
3,480,569	+		Sama_2925	0.46	-0.1
3,480,569	+		Sama_2925	0.46	+0.1
3,480,569	+		Sama_2925	0.46	-0.2
3,480,569	+		Sama_2925	0.46	-1.3
3,480,569	+		Sama_2925	0.46	-0.9
3,480,569	+		Sama_2925	0.46	+0.1
3,480,569	+		Sama_2925	0.46	-0.9
3,480,569	+		Sama_2925	0.46	+2.2
3,480,570	-		Sama_2925	0.46	-0.4
3,480,570	-		Sama_2925	0.46	-0.6
3,480,605	+		Sama_2925	0.54	+0.7
3,480,605	+		Sama_2925	0.54	-1.1
3,480,605	+		Sama_2925	0.54	-1.4
3,480,606	-		Sama_2925	0.55	-0.6
3,480,628	+		Sama_2925	0.60	-0.4
3,480,629	-		Sama_2925	0.60	+0.9
3,480,629	-		Sama_2925	0.60	-2.1
3,480,680	+		Sama_2925	0.72	+2.0
3,480,681	-		Sama_2925	0.72	-0.6
3,480,681	-		Sama_2925	0.72	+1.3
3,480,685	+		Sama_2925	0.73	+1.4
3,480,686	-		Sama_2925	0.74	+1.0
3,480,686	-		Sama_2925	0.74	-2.6
3,480,686	-		Sama_2925	0.74	-2.3
3,480,686	-		Sama_2925	0.74	+0.3
3,480,735	+		Sama_2925	0.85	+1.6
3,480,735	+		Sama_2925	0.85	-2.0
3,480,744	+		Sama_2925	0.87	-0.7
3,480,744	+		Sama_2925	0.87	-1.0
3,480,745	-		Sama_2925	0.88	-0.6
3,480,745	-		Sama_2925	0.88	-2.1
3,480,745	-		Sama_2925	0.88	-1.3
3,480,745	-		Sama_2925	0.88	-0.6
3,480,846	+				-0.3
3,480,846	+				-0.1
3,480,848	+				+1.0
3,481,017	-		Sama_2926	0.25	+2.7
3,481,055	-		Sama_2926	0.30	+2.3
3,481,055	-		Sama_2926	0.30	-2.2
3,481,161	-		Sama_2926	0.46	-1.3
3,481,161	-		Sama_2926	0.46	-0.6