Strain Fitness in Shewanella amazonensis SB2B around Sama_2662

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,185,331	+		Sama_2661	0.42	+1.6
3,185,331	+		Sama_2661	0.42	+0.0
3,185,331	+		Sama_2661	0.42	-1.7
3,185,331	+		Sama_2661	0.42	+1.8
3,185,332	-		Sama_2661	0.42	+0.1
3,185,332	-		Sama_2661	0.42	-0.9
3,185,332	-		Sama_2661	0.42	+0.7
3,185,332	-		Sama_2661	0.42	+2.6
3,185,332	-		Sama_2661	0.42	+0.7
3,185,332	-		Sama_2661	0.42	+3.1
3,185,332	-		Sama_2661	0.42	-0.4
3,185,332	-		Sama_2661	0.42	+0.2
3,185,332	-		Sama_2661	0.42	-0.5
3,185,332	-		Sama_2661	0.42	-0.5
3,185,332	-		Sama_2661	0.42	-1.2
3,185,332	-		Sama_2661	0.42	+1.7
3,185,332	-		Sama_2661	0.42	-0.7
3,185,332	-		Sama_2661	0.42	+1.0
3,185,332	-		Sama_2661	0.42	-0.3
3,185,333	+		Sama_2661	0.42	+0.3
3,185,333	+		Sama_2661	0.42	-1.5
3,185,333	+		Sama_2661	0.42	+1.4
3,185,334	-		Sama_2661	0.42	+0.3
3,185,334	-		Sama_2661	0.42	+2.5
3,185,334	-		Sama_2661	0.42	-1.5
3,185,344	-		Sama_2661	0.43	-1.3
3,185,462	+		Sama_2661	0.51	+0.3
3,185,462	+		Sama_2661	0.51	-2.6
3,185,462	+		Sama_2661	0.51	-0.3
3,185,462	+		Sama_2661	0.51	-1.0
3,185,463	-		Sama_2661	0.51	+0.5
3,185,463	-		Sama_2661	0.51	+2.3
3,185,463	-		Sama_2661	0.51	+0.9
3,185,463	-		Sama_2661	0.51	-1.0
3,185,463	-		Sama_2661	0.51	+1.3
3,185,463	-		Sama_2661	0.51	+2.0
3,185,516	-		Sama_2661	0.55	-0.5
3,185,516	-		Sama_2661	0.55	-1.0
3,185,578	-		Sama_2661	0.59	+0.2
3,185,583	-		Sama_2661	0.59	+0.5
3,185,583	-		Sama_2661	0.59	-2.3
3,185,583	-		Sama_2661	0.59	-0.7
3,185,612	-		Sama_2661	0.61	-1.5
3,185,710	+		Sama_2661	0.68	-1.5
3,185,710	+		Sama_2661	0.68	-0.6
3,185,711	-		Sama_2661	0.68	+1.0
3,185,711	-		Sama_2661	0.68	-2.0
3,185,711	-		Sama_2661	0.68	+0.1
3,185,833	-		Sama_2661	0.76	+1.8
3,185,840	+		Sama_2661	0.77	+1.1
3,185,841	-		Sama_2661	0.77	+0.8
3,185,849	+		Sama_2661	0.77	+0.1
3,185,849	+		Sama_2661	0.77	+0.1
3,185,871	+		Sama_2661	0.79	+0.6
3,185,872	-		Sama_2661	0.79	+0.5
3,186,108	+				-0.1
3,186,109	-				-1.0
3,186,130	-				+1.3
3,186,179	-				-1.0
3,186,179	-				+2.8
3,186,205	-				-0.5
3,186,220	+				-1.5
3,186,220	+				+1.2
3,186,220	+				+3.0
3,186,220	+				-0.1
3,186,220	+				-1.4
3,186,221	-				-1.4
3,186,247	+				+0.4
3,186,286	+				-1.6
3,186,286	+				-3.0
3,186,288	+				+1.6
3,186,288	+				-1.7
3,186,288	+				-0.7
3,186,289	-				-0.6
3,186,289	-				-0.8
3,186,289	-				+0.9
3,186,292	+				-0.4
3,186,292	+				+1.7
3,186,292	+				+0.3
3,186,292	+				+1.6
3,186,292	+				-0.7
3,186,292	+				-0.2
3,186,292	+				+0.9
3,186,292	+				+1.5
3,186,292	+				-2.5
3,186,292	+				+1.0
3,186,292	+				-2.2
3,186,292	+				+1.3
3,186,292	+				+0.6
3,186,292	+				-0.0
3,186,292	+				+2.7
3,186,293	-				-2.6
3,186,293	-				-2.0
3,186,293	-				-2.2
3,186,293	-				-1.3
3,186,293	-				+0.6
3,186,293	-				-1.5
3,186,293	-				+0.8
3,186,293	-				+1.6
3,186,293	-				-2.7
3,186,293	-				+1.5
3,186,293	-				+1.1
3,186,293	-				+1.5
3,186,324	+				+1.3
3,186,423	+		Sama_2662	0.14	+2.0
3,186,424	-		Sama_2662	0.14	+2.8
3,186,483	+		Sama_2662	0.21	-2.0
3,186,484	-		Sama_2662	0.21	+0.3
3,186,484	-		Sama_2662	0.21	-1.2
3,186,484	-		Sama_2662	0.21	+0.0
3,186,484	-		Sama_2662	0.21	+0.0
3,186,484	-		Sama_2662	0.21	+2.0
3,186,488	-		Sama_2662	0.21	-1.3
3,186,493	+		Sama_2662	0.22	+0.3
3,186,494	-		Sama_2662	0.22	+0.4
3,186,504	-		Sama_2662	0.23	-0.3
3,186,603	+		Sama_2662	0.34	+1.5
3,186,687	+		Sama_2662	0.43	+0.4
3,186,715	+		Sama_2662	0.46	-1.2
3,186,725	+		Sama_2662	0.47	+0.7
3,186,726	-		Sama_2662	0.47	-0.7
3,186,766	+		Sama_2662	0.51	-1.8
3,186,900	-		Sama_2662	0.66	-1.2
3,186,954	+		Sama_2662	0.72	-0.0
3,186,954	+		Sama_2662	0.72	-0.5
3,186,954	+		Sama_2662	0.72	+1.4
3,186,954	+		Sama_2662	0.72	-1.3
3,186,954	+		Sama_2662	0.72	-1.8
3,186,954	+		Sama_2662	0.72	+0.9
3,186,954	+		Sama_2662	0.72	-0.1
3,186,954	+		Sama_2662	0.72	-1.7
3,186,954	+		Sama_2662	0.72	-0.2
3,186,954	+		Sama_2662	0.72	+0.1
3,186,954	+		Sama_2662	0.72	+0.3
3,186,955	-		Sama_2662	0.72	-1.5
3,186,955	-		Sama_2662	0.72	+0.2
3,186,955	-		Sama_2662	0.72	+2.3
3,186,956	+		Sama_2662	0.72	-2.4
3,186,956	+		Sama_2662	0.72	+1.5
3,186,956	+		Sama_2662	0.72	-2.5
3,186,956	+		Sama_2662	0.72	-1.3
3,186,956	+		Sama_2662	0.72	+0.1
3,186,956	+		Sama_2662	0.72	-1.5
3,186,956	+		Sama_2662	0.72	-0.2
3,186,957	-		Sama_2662	0.72	+1.4
3,186,957	-		Sama_2662	0.72	+1.6
3,186,957	-		Sama_2662	0.72	-1.5
3,186,957	-		Sama_2662	0.72	+0.4
3,186,957	-		Sama_2662	0.72	+1.6
3,186,957	-		Sama_2662	0.72	+1.4
3,186,957	-		Sama_2662	0.72	+1.5
3,186,957	-		Sama_2662	0.72	-1.5
3,186,957	-		Sama_2662	0.72	-1.3
3,186,957	-		Sama_2662	0.72	+0.3
3,186,957	-		Sama_2662	0.72	+4.1
3,186,958	+		Sama_2662	0.72	-2.5
3,186,958	+		Sama_2662	0.72	-1.0
3,186,958	+		Sama_2662	0.72	-0.3
3,186,958	+		Sama_2662	0.72	+0.0
3,186,958	+		Sama_2662	0.72	+1.5
3,186,958	+		Sama_2662	0.72	-2.5
3,186,959	-		Sama_2662	0.72	-1.5
3,186,959	-		Sama_2662	0.72	-2.3
3,186,959	-		Sama_2662	0.72	+1.3
3,186,959	-		Sama_2662	0.72	-0.5
3,186,959	-		Sama_2662	0.72	+0.5
3,186,959	-		Sama_2662	0.72	+2.3
3,186,959	-		Sama_2662	0.72	+4.1
3,186,959	-		Sama_2662	0.72	-0.3
3,187,021	-		Sama_2662	0.79	+1.9
3,187,033	+		Sama_2662	0.80	+1.0
3,187,051	+		Sama_2662	0.82	-1.0
3,187,051	+		Sama_2662	0.82	+0.5
3,187,052	-		Sama_2662	0.82	+0.4
3,187,052	-		Sama_2662	0.82	-0.4
3,187,052	-		Sama_2662	0.82	+0.5
3,187,052	-		Sama_2662	0.82	+2.0
3,187,052	-		Sama_2662	0.82	+2.4
3,187,060	-		Sama_2662	0.83	+0.3
3,187,060	-		Sama_2662	0.83	-1.0
3,187,060	-		Sama_2662	0.83	+2.2
3,187,149	+				-0.7
3,187,149	+				-1.9
3,187,158	-				+2.5
3,187,158	-				-0.1
3,187,158	-				+1.9
3,187,158	-				-0.6
3,187,214	+				+1.9
3,187,218	+				+0.9
3,187,219	-				+1.3
3,187,219	-				-0.4
3,187,319	+				+0.0
3,187,320	-				+1.7
3,187,342	+				-2.6
3,187,343	-				+0.0
3,187,358	-				-1.7
3,187,358	-				-1.9
3,187,358	-				+1.5
3,187,396	-				-2.2
3,187,396	-				-1.9
3,187,412	-				-0.9
3,187,412	-				-0.3
3,187,448	+		Sama_2663	0.10	+0.3
3,187,448	+		Sama_2663	0.10	-0.5
3,187,449	-		Sama_2663	0.10	+1.6
3,187,449	-		Sama_2663	0.10	-1.9
3,187,458	+		Sama_2663	0.10	-1.7
3,187,459	-		Sama_2663	0.10	+2.9
3,187,468	-		Sama_2663	0.11	-1.2
3,187,588	+		Sama_2663	0.15	+0.8
3,187,589	-		Sama_2663	0.15	-1.3
3,187,594	-		Sama_2663	0.15	+1.7
3,187,710	-		Sama_2663	0.19	-1.3
3,187,710	-		Sama_2663	0.19	-0.6
3,187,784	+		Sama_2663	0.22	+0.3
3,187,784	+		Sama_2663	0.22	+1.5
3,187,784	+		Sama_2663	0.22	+0.1
3,187,785	-		Sama_2663	0.22	-2.3
3,187,785	-		Sama_2663	0.22	-2.8
3,187,785	-		Sama_2663	0.22	-1.0
3,187,785	-		Sama_2663	0.22	+0.5
3,187,785	-		Sama_2663	0.22	+2.2
3,187,785	-		Sama_2663	0.22	+1.3
3,187,848	-		Sama_2663	0.24	+0.1
3,187,901	+		Sama_2663	0.26	+2.3
3,187,902	-		Sama_2663	0.26	-2.6
3,188,109	+		Sama_2663	0.33	+1.9
3,188,109	+		Sama_2663	0.33	+1.3
3,188,109	+		Sama_2663	0.33	-0.0
3,188,116	+		Sama_2663	0.33	-0.3
3,188,116	+		Sama_2663	0.33	+1.4
3,188,117	-		Sama_2663	0.33	+1.7
3,188,149	+		Sama_2663	0.34	+0.7
3,188,150	-		Sama_2663	0.34	-2.3
3,188,150	-		Sama_2663	0.34	+0.9
3,188,150	-		Sama_2663	0.34	+0.2