Strain Fitness in Shewanella amazonensis SB2B around Sama_2543

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
3,052,068	-		Sama_2542	0.17	+1.7
3,052,085	+		Sama_2542	0.18	+0.1
3,052,086	-		Sama_2542	0.18	-0.7
3,052,086	-		Sama_2542	0.18	+0.8
3,052,122	+		Sama_2542	0.22	+1.0
3,052,123	-		Sama_2542	0.22	-0.1
3,052,135	+		Sama_2542	0.23	+1.4
3,052,135	+		Sama_2542	0.23	+0.3
3,052,136	-		Sama_2542	0.23	-1.7
3,052,160	+		Sama_2542	0.25	+0.0
3,052,161	-		Sama_2542	0.25	-1.6
3,052,178	+		Sama_2542	0.27	+0.4
3,052,179	-		Sama_2542	0.27	+0.3
3,052,179	-		Sama_2542	0.27	-0.2
3,052,213	+		Sama_2542	0.30	+1.9
3,052,235	-		Sama_2542	0.32	+0.9
3,052,260	+		Sama_2542	0.34	+0.1
3,052,260	+		Sama_2542	0.34	-0.6
3,052,260	+		Sama_2542	0.34	+2.3
3,052,261	-		Sama_2542	0.35	-3.4
3,052,261	-		Sama_2542	0.35	+1.2
3,052,261	-		Sama_2542	0.35	+1.2
3,052,261	-		Sama_2542	0.35	-0.9
3,052,261	-		Sama_2542	0.35	-0.0
3,052,261	-		Sama_2542	0.35	+1.3
3,052,261	-		Sama_2542	0.35	+1.2
3,052,261	-		Sama_2542	0.35	+1.0
3,052,261	-		Sama_2542	0.35	-0.7
3,052,261	-		Sama_2542	0.35	+0.5
3,052,263	+		Sama_2542	0.35	+2.8
3,052,263	+		Sama_2542	0.35	+2.0
3,052,264	-		Sama_2542	0.35	-0.6
3,052,264	-		Sama_2542	0.35	-1.1
3,052,264	-		Sama_2542	0.35	-0.7
3,052,264	-		Sama_2542	0.35	-0.5
3,052,264	-		Sama_2542	0.35	-0.4
3,052,266	+		Sama_2542	0.35	-3.2
3,052,266	+		Sama_2542	0.35	-2.2
3,052,266	+		Sama_2542	0.35	+0.4
3,052,266	+		Sama_2542	0.35	+0.5
3,052,266	+		Sama_2542	0.35	+0.7
3,052,266	+		Sama_2542	0.35	-0.3
3,052,266	+		Sama_2542	0.35	-1.9
3,052,266	+		Sama_2542	0.35	-2.6
3,052,266	+		Sama_2542	0.35	-0.0
3,052,267	-		Sama_2542	0.35	-0.3
3,052,267	-		Sama_2542	0.35	-0.3
3,052,267	-		Sama_2542	0.35	+2.7
3,052,267	-		Sama_2542	0.35	+0.6
3,052,279	+		Sama_2542	0.36	-0.5
3,052,279	+		Sama_2542	0.36	-0.4
3,052,280	-		Sama_2542	0.36	+1.6
3,052,280	-		Sama_2542	0.36	-1.4
3,052,280	-		Sama_2542	0.36	-0.2
3,052,280	-		Sama_2542	0.36	-0.9
3,052,296	-		Sama_2542	0.38	-3.3
3,052,305	+		Sama_2542	0.39	-1.7
3,052,305	+		Sama_2542	0.39	-1.7
3,052,306	-		Sama_2542	0.39	-1.7
3,052,306	-		Sama_2542	0.39	-1.0
3,052,306	-		Sama_2542	0.39	-2.3
3,052,354	+		Sama_2542	0.43	+2.5
3,052,355	-		Sama_2542	0.43	-1.7
3,052,356	+		Sama_2542	0.43	-1.2
3,052,356	+		Sama_2542	0.43	+1.6
3,052,356	+		Sama_2542	0.43	+0.3
3,052,357	-		Sama_2542	0.43	+1.3
3,052,357	-		Sama_2542	0.43	-3.2
3,052,357	-		Sama_2542	0.43	-1.0
3,052,438	+		Sama_2542	0.51	+0.8
3,052,447	+		Sama_2542	0.52	+0.1
3,052,448	-		Sama_2542	0.52	+0.2
3,052,460	-		Sama_2542	0.53	-1.0
3,052,474	+		Sama_2542	0.54	-0.7
3,052,475	-		Sama_2542	0.54	-1.3
3,052,477	+		Sama_2542	0.54	+1.3
3,052,478	-		Sama_2542	0.54	+0.8
3,052,478	-		Sama_2542	0.54	+1.3
3,052,542	+		Sama_2542	0.60	+0.9
3,052,542	+		Sama_2542	0.60	+3.0
3,052,542	+		Sama_2542	0.60	-1.5
3,052,542	+		Sama_2542	0.60	-0.9
3,052,543	-		Sama_2542	0.60	-0.3
3,052,543	-		Sama_2542	0.60	-1.5
3,052,543	-		Sama_2542	0.60	-1.5
3,052,543	-		Sama_2542	0.60	-1.2
3,052,543	-		Sama_2542	0.60	+0.3
3,052,543	-		Sama_2542	0.60	-3.0
3,052,575	+		Sama_2542	0.63	+0.9
3,052,619	+		Sama_2542	0.67	+1.3
3,052,619	+		Sama_2542	0.67	-0.7
3,052,662	+		Sama_2542	0.71	+1.4
3,052,665	+		Sama_2542	0.72	-1.0
3,052,666	-		Sama_2542	0.72	+0.4
3,052,666	-		Sama_2542	0.72	-1.3
3,052,666	-		Sama_2542	0.72	-0.8
3,052,749	+		Sama_2542	0.79	-1.0
3,052,749	+		Sama_2542	0.79	-1.2
3,052,866	-				-4.0
3,052,866	-				-1.5
3,053,063	+				-2.1
3,053,063	+				-2.2
3,053,063	+				-1.7
3,053,064	-				-0.0
3,053,064	-				+0.1
3,053,064	-				+0.1
3,053,064	-				+1.5
3,053,066	+				-0.0
3,053,067	-				-1.2
3,053,067	-				+0.6
3,053,154	-		Sama_2543	0.11	+0.1
3,053,157	+		Sama_2543	0.11	-0.9
3,053,157	+		Sama_2543	0.11	+1.9
3,053,157	+		Sama_2543	0.11	-0.9
3,053,157	+		Sama_2543	0.11	+0.6
3,053,311	+		Sama_2543	0.22	-1.0
3,053,312	-		Sama_2543	0.22	-0.1
3,053,330	-		Sama_2543	0.24	+4.2
3,053,375	-		Sama_2543	0.27	-0.0
3,053,389	+		Sama_2543	0.28	-0.7
3,053,389	+		Sama_2543	0.28	+0.9
3,053,390	-		Sama_2543	0.28	-1.0
3,053,390	-		Sama_2543	0.28	-2.2
3,053,390	-		Sama_2543	0.28	+1.0
3,053,390	-		Sama_2543	0.28	-0.3
3,053,390	-		Sama_2543	0.28	-2.2
3,053,390	-		Sama_2543	0.28	+3.3
3,053,390	-		Sama_2543	0.28	+0.1
3,053,390	-		Sama_2543	0.28	+1.7
3,053,393	+		Sama_2543	0.28	-2.2
3,053,393	+		Sama_2543	0.28	+3.3
3,053,393	+		Sama_2543	0.28	-0.1
3,053,393	+		Sama_2543	0.28	+1.3
3,053,393	+		Sama_2543	0.28	-1.2
3,053,394	-		Sama_2543	0.28	+0.7
3,053,394	-		Sama_2543	0.28	+0.9
3,053,594	-		Sama_2543	0.43	-1.8
3,053,616	-		Sama_2543	0.45	+0.5
3,053,682	+		Sama_2543	0.49	-1.0
3,053,683	-		Sama_2543	0.49	-2.0
3,053,683	-		Sama_2543	0.49	+0.1
3,053,727	-		Sama_2543	0.53	-1.7
3,053,727	-		Sama_2543	0.53	+1.3
3,053,742	+		Sama_2543	0.54	-2.6
3,053,742	+		Sama_2543	0.54	+1.5
3,053,743	-		Sama_2543	0.54	-1.0
3,053,749	+		Sama_2543	0.54	-0.6
3,053,749	+		Sama_2543	0.54	-0.7
3,053,749	+		Sama_2543	0.54	-1.3
3,053,749	+		Sama_2543	0.54	+1.3
3,053,749	+		Sama_2543	0.54	-1.2
3,053,749	+		Sama_2543	0.54	+2.6
3,053,749	+		Sama_2543	0.54	-1.7
3,053,749	+		Sama_2543	0.54	+0.6
3,053,749	+		Sama_2543	0.54	+0.8
3,053,749	+		Sama_2543	0.54	-2.0
3,053,749	+		Sama_2543	0.54	-0.0
3,053,750	-		Sama_2543	0.54	-2.8
3,053,750	-		Sama_2543	0.54	-1.3
3,053,750	-		Sama_2543	0.54	-0.7
3,053,750	-		Sama_2543	0.54	-0.3
3,053,750	-		Sama_2543	0.54	-1.9
3,053,750	-		Sama_2543	0.54	-0.0
3,053,750	-		Sama_2543	0.54	-1.4
3,053,750	-		Sama_2543	0.54	+0.7
3,053,750	-		Sama_2543	0.54	-0.5
3,053,750	-		Sama_2543	0.54	-1.5
3,053,750	-		Sama_2543	0.54	+1.3
3,053,750	-		Sama_2543	0.54	+0.4
3,053,750	-		Sama_2543	0.54	+1.6
3,053,750	-		Sama_2543	0.54	+0.8
3,053,750	-		Sama_2543	0.54	-3.0
3,053,751	+		Sama_2543	0.54	+1.5
3,053,751	+		Sama_2543	0.54	+0.1
3,053,751	+		Sama_2543	0.54	-2.2
3,053,751	+		Sama_2543	0.54	+1.3
3,053,751	+		Sama_2543	0.54	+1.9
3,053,751	+		Sama_2543	0.54	-1.7
3,053,751	+		Sama_2543	0.54	-0.5
3,053,751	+		Sama_2543	0.54	+0.3
3,053,752	-		Sama_2543	0.55	-1.8
3,053,752	-		Sama_2543	0.55	-1.3
3,053,752	-		Sama_2543	0.55	-2.0
3,053,752	-		Sama_2543	0.55	+0.4
3,053,752	-		Sama_2543	0.55	-0.8
3,053,752	-		Sama_2543	0.55	-0.7
3,053,752	-		Sama_2543	0.55	+1.4
3,053,752	-		Sama_2543	0.55	-2.2
3,053,752	-		Sama_2543	0.55	+2.1
3,053,824	+		Sama_2543	0.60	-1.0
3,053,824	+		Sama_2543	0.60	-1.5
3,053,825	-		Sama_2543	0.60	+0.8
3,053,856	+		Sama_2543	0.62	+3.5
3,053,857	-		Sama_2543	0.62	+0.7
3,053,857	-		Sama_2543	0.62	+0.1
3,053,908	+		Sama_2543	0.66	+0.3
3,053,975	-		Sama_2543	0.71	+0.1
3,054,065	+		Sama_2543	0.78	-1.3
3,054,122	+		Sama_2543	0.82	-0.4
3,054,122	+		Sama_2543	0.82	+0.6
3,054,122	+		Sama_2543	0.82	-0.3
3,054,123	-		Sama_2543	0.82	+0.4
3,054,123	-		Sama_2543	0.82	+1.4
3,054,164	-		Sama_2543	0.85	+3.8
3,054,164	-		Sama_2543	0.85	+0.8
3,054,411	-				-1.6
3,054,411	-				+2.1
3,054,434	-		Sama_2544	0.13	-1.9
3,054,443	-		Sama_2544	0.14	-3.5
3,054,476	+		Sama_2544	0.21	-2.0
3,054,477	-		Sama_2544	0.21	+0.1
3,054,539	+		Sama_2544	0.33	-2.5
3,054,551	+		Sama_2544	0.36	-2.3
3,054,552	-		Sama_2544	0.36	-2.2
3,054,560	-		Sama_2544	0.37	-2.2
3,054,560	-		Sama_2544	0.37	-1.9
3,054,560	-		Sama_2544	0.37	+3.7
3,054,560	-		Sama_2544	0.37	+0.7
3,054,607	+		Sama_2544	0.47	+1.8
3,054,608	-		Sama_2544	0.47	+0.2
3,054,641	+		Sama_2544	0.53	-0.0
3,054,699	+		Sama_2544	0.65	+1.9
3,054,699	+		Sama_2544	0.65	+3.0
3,054,765	-		Sama_2544	0.78	+0.9
3,054,776	-		Sama_2544	0.80	+1.4
3,054,810	+		Sama_2544	0.87	-0.6
3,054,810	+		Sama_2544	0.87	-1.3
3,054,844	+				+3.8
3,054,877	-				+0.8
3,054,880	+				+2.0
3,054,880	+				-0.4
3,054,880	+				+0.3
3,054,880	+				+1.4
3,054,881	-				-0.4
3,054,881	-				+0.9
3,054,881	-				+0.6
3,054,881	-				+2.3
3,054,881	-				-1.3
3,054,887	+				-1.7
3,054,887	+				+0.1
3,054,888	-				+0.2
3,054,888	-				-1.7
3,054,888	-				+0.6
3,054,891	+				-2.2
3,054,892	-				+2.9
3,054,899	+				-0.7
3,055,006	+				+0.5
3,055,006	+				-1.0
3,055,006	+				+0.3
3,055,006	+				+0.1
3,055,006	+				-0.7
3,055,007	-				+1.7
3,055,007	-				-1.0
3,055,007	-				-1.5
3,055,023	+				+0.2
3,055,023	+				-1.0
3,055,023	+				+1.7
3,055,023	+				+0.3
3,055,065	+		Sama_2545	0.13	-1.4
3,055,087	-		Sama_2545	0.20	-0.9
3,055,087	-		Sama_2545	0.20	-0.3
3,055,087	-		Sama_2545	0.20	+0.7
3,055,088	+		Sama_2545	0.20	+0.9
3,055,088	+		Sama_2545	0.20	-3.2
3,055,089	-		Sama_2545	0.21	-2.9
3,055,089	-		Sama_2545	0.21	-2.0
3,055,089	-		Sama_2545	0.21	-1.5
3,055,089	-		Sama_2545	0.21	+0.7
3,055,092	+		Sama_2545	0.22	-2.3
3,055,092	+		Sama_2545	0.22	+0.8
3,055,092	+		Sama_2545	0.22	-0.3
3,055,092	+		Sama_2545	0.22	-2.5
3,055,093	-		Sama_2545	0.22	+0.2
3,055,247	+		Sama_2545	0.73	-0.1
3,055,247	+		Sama_2545	0.73	-2.4
3,055,247	+		Sama_2545	0.73	+0.7
3,055,247	+		Sama_2545	0.73	-0.0
3,055,247	+		Sama_2545	0.73	+1.1
3,055,248	-		Sama_2545	0.74	-3.3
3,055,248	-		Sama_2545	0.74	-1.5
3,055,248	-		Sama_2545	0.74	-0.2
3,055,248	-		Sama_2545	0.74	-1.3
3,055,248	-		Sama_2545	0.74	-0.3
3,055,308	+				+0.1
3,055,308	+				+0.3
3,055,312	-				-2.7
3,055,326	+				-0.7
3,055,326	+				+1.0
3,055,326	+				+0.3
3,055,326	+				+1.5
3,055,326	+				-1.5
3,055,326	+				-0.0
3,055,327	-				-0.0
3,055,327	-				+0.8
3,055,327	-				-1.2
3,055,327	-				-0.6
3,055,327	-				-1.9
3,055,327	-				+0.8
3,055,327	-				-1.9