Strain Fitness in Shewanella amazonensis SB2B around Sama_2407

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,893,190	+		Sama_2406	0.61	+1.1
2,893,198	-		Sama_2406	0.62	-0.7
2,893,278	+		Sama_2406	0.65	-2.0
2,893,278	+		Sama_2406	0.65	-0.3
2,893,278	+		Sama_2406	0.65	-1.5
2,893,278	+		Sama_2406	0.65	-2.0
2,893,278	+		Sama_2406	0.65	+0.6
2,893,278	+		Sama_2406	0.65	-1.0
2,893,279	-		Sama_2406	0.65	+4.0
2,893,279	-		Sama_2406	0.65	+1.9
2,893,309	+		Sama_2406	0.66	+2.1
2,893,508	+		Sama_2406	0.75	-0.3
2,893,538	+		Sama_2406	0.76	+0.8
2,893,585	+		Sama_2406	0.78	-0.9
2,893,586	-		Sama_2406	0.78	-2.0
2,893,603	-		Sama_2406	0.79	-1.3
2,893,634	+		Sama_2406	0.80	-0.5
2,893,635	-		Sama_2406	0.80	+1.4
2,893,671	+		Sama_2406	0.82	+1.2
2,893,671	+		Sama_2406	0.82	-1.5
2,893,672	-		Sama_2406	0.82	-0.1
2,893,672	-		Sama_2406	0.82	+2.1
2,893,825	+		Sama_2406	0.88	+0.1
2,893,826	-		Sama_2406	0.88	+1.6
2,893,836	+		Sama_2406	0.89	+1.0
2,893,836	+		Sama_2406	0.89	-3.3
2,893,836	+		Sama_2406	0.89	-1.1
2,893,837	-		Sama_2406	0.89	+1.0
2,893,837	-		Sama_2406	0.89	-2.3
2,893,882	+				+2.2
2,893,883	-				+0.1
2,893,883	-				-0.2
2,893,883	-				-1.7
2,893,925	+				+0.2
2,893,927	+				-1.1
2,893,927	+				-0.0
2,893,927	+				+0.7
2,893,928	-				+3.3
2,893,928	-				+0.0
2,893,928	-				+0.1
2,893,928	-				+2.0
2,893,961	-				-0.1
2,893,962	+				+1.3
2,893,962	+				+3.5
2,893,962	+				+2.9
2,893,962	+				-0.9
2,893,963	-				+2.3
2,893,963	-				-1.1
2,893,963	-				+4.9
2,893,963	-				+0.8
2,894,090	+				+2.3
2,894,158	+				+0.5
2,894,158	+				-0.1
2,894,177	-				-2.0
2,894,204	-				+0.3
2,894,204	-				-1.1
2,894,204	-				-1.0
2,894,242	+				-2.2
2,894,242	+				+0.4
2,894,243	-				+2.5
2,894,259	-				+1.2
2,894,291	+		Sama_2407	0.11	+2.2
2,894,292	-		Sama_2407	0.11	-1.1
2,894,292	-		Sama_2407	0.11	+0.8
2,894,292	-		Sama_2407	0.11	-0.9
2,894,292	-		Sama_2407	0.11	+0.9
2,894,292	-		Sama_2407	0.11	-2.4
2,894,292	-		Sama_2407	0.11	+0.4
2,894,329	+		Sama_2407	0.15	+1.1
2,894,329	+		Sama_2407	0.15	+1.3
2,894,329	+		Sama_2407	0.15	+3.3
2,894,329	+		Sama_2407	0.15	+2.3
2,894,330	-		Sama_2407	0.15	-0.7
2,894,330	-		Sama_2407	0.15	+3.1
2,894,330	-		Sama_2407	0.15	+1.5
2,894,330	-		Sama_2407	0.15	+0.4
2,894,330	-		Sama_2407	0.15	-0.9
2,894,352	-		Sama_2407	0.17	-3.2
2,894,374	+		Sama_2407	0.19	-0.5
2,894,375	-		Sama_2407	0.19	+0.9
2,894,375	-		Sama_2407	0.19	+0.5
2,894,375	-		Sama_2407	0.19	-0.6
2,894,399	-		Sama_2407	0.22	+0.7
2,894,404	+		Sama_2407	0.22	-2.1
2,894,405	-		Sama_2407	0.22	+1.0
2,894,405	-		Sama_2407	0.22	-1.1
2,894,424	+		Sama_2407	0.24	+0.6
2,894,425	-		Sama_2407	0.24	-0.9
2,894,425	-		Sama_2407	0.24	-0.2
2,894,425	-		Sama_2407	0.24	-2.7
2,894,425	-		Sama_2407	0.24	+1.6
2,894,426	+		Sama_2407	0.24	-0.5
2,894,427	-		Sama_2407	0.24	+1.0
2,894,427	-		Sama_2407	0.24	-1.7
2,894,427	-		Sama_2407	0.24	+1.3
2,894,440	+		Sama_2407	0.26	-2.9
2,894,440	+		Sama_2407	0.26	-2.2
2,894,441	-		Sama_2407	0.26	-0.5
2,894,521	+		Sama_2407	0.33	+3.0
2,894,522	-		Sama_2407	0.34	-0.3
2,894,537	+		Sama_2407	0.35	+0.5
2,894,678	+		Sama_2407	0.48	-1.9
2,894,678	+		Sama_2407	0.48	-0.5
2,894,678	+		Sama_2407	0.48	+2.9
2,894,678	+		Sama_2407	0.48	-1.3
2,894,678	+		Sama_2407	0.48	-0.3
2,894,678	+		Sama_2407	0.48	+1.2
2,894,678	+		Sama_2407	0.48	-0.1
2,894,679	-		Sama_2407	0.49	-2.0
2,894,679	-		Sama_2407	0.49	+0.3
2,894,679	-		Sama_2407	0.49	-0.9
2,894,679	-		Sama_2407	0.49	-1.5
2,894,679	-		Sama_2407	0.49	-0.2
2,894,679	-		Sama_2407	0.49	-0.9
2,894,679	-		Sama_2407	0.49	+1.1
2,894,679	-		Sama_2407	0.49	+0.7
2,894,679	-		Sama_2407	0.49	+0.2
2,894,679	-		Sama_2407	0.49	-3.0
2,894,679	-		Sama_2407	0.49	+1.5
2,894,679	-		Sama_2407	0.49	+0.1
2,894,680	+		Sama_2407	0.49	-1.1
2,894,681	-		Sama_2407	0.49	+1.0
2,894,749	+		Sama_2407	0.55	+0.7
2,894,750	-		Sama_2407	0.55	+1.7
2,894,750	-		Sama_2407	0.55	-1.9
2,894,750	-		Sama_2407	0.55	-0.0
2,894,750	-		Sama_2407	0.55	-0.3
2,894,750	-		Sama_2407	0.55	+0.3
2,894,750	-		Sama_2407	0.55	-0.9
2,894,803	+		Sama_2407	0.60	-0.9
2,894,803	+		Sama_2407	0.60	+0.3
2,894,803	+		Sama_2407	0.60	-1.6
2,894,803	+		Sama_2407	0.60	-0.9
2,894,804	-		Sama_2407	0.61	-1.3
2,894,831	+		Sama_2407	0.63	-0.5
2,894,832	-		Sama_2407	0.63	-0.1
2,894,832	-		Sama_2407	0.63	-0.9
2,894,839	-		Sama_2407	0.64	-0.3
2,894,946	+		Sama_2407	0.74	+1.2
2,894,946	+		Sama_2407	0.74	-1.5
2,894,946	+		Sama_2407	0.74	+1.4
2,894,946	+		Sama_2407	0.74	+3.0
2,894,946	+		Sama_2407	0.74	+2.8
2,894,947	-		Sama_2407	0.74	+1.4
2,894,963	+		Sama_2407	0.76	-3.6
2,894,963	+		Sama_2407	0.76	-0.4
2,895,054	-		Sama_2407	0.84	-0.1
2,895,082	+		Sama_2407	0.87	+3.8
2,895,082	+		Sama_2407	0.87	+1.7
2,895,083	-		Sama_2407	0.87	+0.6
2,895,083	-		Sama_2407	0.87	+0.7
2,895,083	-		Sama_2407	0.87	-1.1
2,895,083	-		Sama_2407	0.87	+0.2
2,895,085	+		Sama_2407	0.87	+1.5
2,895,085	+		Sama_2407	0.87	+1.7
2,895,085	+		Sama_2407	0.87	+0.3
2,895,086	-		Sama_2407	0.88	+0.2
2,895,086	-		Sama_2407	0.88	-3.3
2,895,086	-		Sama_2407	0.88	-1.9
2,895,086	-		Sama_2407	0.88	+0.9
2,895,095	+		Sama_2407	0.88	-0.3
2,895,096	-		Sama_2407	0.89	+5.7
2,895,096	-		Sama_2407	0.89	+1.0
2,895,096	-		Sama_2407	0.89	+2.8
2,895,128	+				-0.2
2,895,129	-				-1.5
2,895,197	+				-1.4
2,895,198	-				-2.7
2,895,204	+				-1.5
2,895,204	+				+0.6
2,895,204	+				+0.5
2,895,204	+				-0.8
2,895,204	+				-0.5
2,895,205	-				-1.2
2,895,205	-				+0.8
2,895,205	-				-1.1
2,895,205	-				-1.9
2,895,205	-				+2.3
2,895,205	-				+2.5
2,895,229	+				-1.5
2,895,291	+				-0.5
2,895,291	+				+0.5
2,895,292	-				+0.6
2,895,292	-				-1.1
2,895,292	-				+2.0
2,895,315	+				+1.3
2,895,315	+				-1.5
2,895,315	+				+1.1
2,895,315	+				-1.9
2,895,315	+				+0.1
2,895,316	-				-2.6
2,895,321	+				-0.9
2,895,322	-				-0.2
2,895,401	-				-0.1
2,895,401	-				+1.9
2,895,401	-				-2.8
2,895,473	+		Sama_2408	0.22	+1.7
2,895,474	-		Sama_2408	0.22	-1.5
2,895,524	+		Sama_2408	0.31	-1.1
2,895,600	-		Sama_2408	0.44	+0.0
2,895,696	+		Sama_2408	0.61	-1.1
2,895,696	+		Sama_2408	0.61	-0.4
2,895,696	+		Sama_2408	0.61	+0.5
2,895,696	+		Sama_2408	0.61	-2.1
2,895,697	-		Sama_2408	0.61	-1.7
2,895,697	-		Sama_2408	0.61	-1.4
2,895,815	+		Sama_2408	0.81	-2.1
2,895,833	+		Sama_2408	0.84	+3.0
2,895,833	+		Sama_2408	0.84	+0.8
2,895,894	+				+3.7
2,895,985	+				+1.3
2,896,043	-				-2.1
2,896,043	-				-0.1
2,896,075	+		Sama_2409	0.11	+0.6
2,896,075	+		Sama_2409	0.11	-1.2
2,896,076	-		Sama_2409	0.12	+0.5
2,896,076	-		Sama_2409	0.12	+1.1
2,896,102	-		Sama_2409	0.21	+1.5
2,896,102	-		Sama_2409	0.21	+0.9
2,896,102	-		Sama_2409	0.21	-0.1
2,896,123	-		Sama_2409	0.28	-2.8