Strain Fitness in Shewanella amazonensis SB2B around Sama_2384

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,864,059	+		Sama_2382	0.65	-2.5
2,864,059	+		Sama_2382	0.65	-2.0
2,864,059	+		Sama_2382	0.65	+2.4
2,864,059	+		Sama_2382	0.65	+0.5
2,864,059	+		Sama_2382	0.65	-0.5
2,864,059	+		Sama_2382	0.65	-0.1
2,864,059	+		Sama_2382	0.65	+0.7
2,864,059	+		Sama_2382	0.65	-1.5
2,864,059	+		Sama_2382	0.65	+0.4
2,864,059	+		Sama_2382	0.65	+1.5
2,864,060	-		Sama_2382	0.65	+3.6
2,864,060	-		Sama_2382	0.65	-0.1
2,864,060	-		Sama_2382	0.65	-0.7
2,864,074	+		Sama_2382	0.66	+0.5
2,864,074	+		Sama_2382	0.66	-2.0
2,864,074	+		Sama_2382	0.66	+1.1
2,864,075	-		Sama_2382	0.66	+1.7
2,864,075	-		Sama_2382	0.66	-0.5
2,864,118	+		Sama_2382	0.68	-0.1
2,864,176	+		Sama_2382	0.71	-1.1
2,864,176	+		Sama_2382	0.71	+0.1
2,864,176	+		Sama_2382	0.71	-2.7
2,864,176	+		Sama_2382	0.71	-0.5
2,864,176	+		Sama_2382	0.71	-1.1
2,864,177	-		Sama_2382	0.71	+1.0
2,864,177	-		Sama_2382	0.71	-0.1
2,864,178	+		Sama_2382	0.71	-1.0
2,864,178	+		Sama_2382	0.71	+0.3
2,864,178	+		Sama_2382	0.71	-1.3
2,864,178	+		Sama_2382	0.71	+1.4
2,864,178	+		Sama_2382	0.71	+1.2
2,864,179	-		Sama_2382	0.71	-1.5
2,864,188	+		Sama_2382	0.71	+1.0
2,864,189	-		Sama_2382	0.72	-0.9
2,864,190	+		Sama_2382	0.72	+1.6
2,864,190	+		Sama_2382	0.72	+4.5
2,864,190	+		Sama_2382	0.72	-0.0
2,864,191	-		Sama_2382	0.72	+1.9
2,864,191	-		Sama_2382	0.72	+0.2
2,864,191	-		Sama_2382	0.72	+1.5
2,864,191	-		Sama_2382	0.72	+1.5
2,864,203	-		Sama_2382	0.72	-1.5
2,864,209	+		Sama_2382	0.73	+2.0
2,864,218	+		Sama_2382	0.73	-0.2
2,864,219	-		Sama_2382	0.73	-0.9
2,864,219	-		Sama_2382	0.73	+0.5
2,864,219	-		Sama_2382	0.73	+0.1
2,864,235	-		Sama_2382	0.74	+1.6
2,864,256	+		Sama_2382	0.75	-0.6
2,864,274	+		Sama_2382	0.76	+0.1
2,864,274	+		Sama_2382	0.76	-1.3
2,864,275	-		Sama_2382	0.76	+2.0
2,864,289	+		Sama_2382	0.77	+2.5
2,864,289	+		Sama_2382	0.77	+0.4
2,864,313	+		Sama_2382	0.78	-0.5
2,864,314	-		Sama_2382	0.78	-1.9
2,864,314	-		Sama_2382	0.78	+0.1
2,864,314	-		Sama_2382	0.78	+1.2
2,864,327	+		Sama_2382	0.79	-2.2
2,864,327	+		Sama_2382	0.79	+1.7
2,864,328	-		Sama_2382	0.79	+0.8
2,864,328	-		Sama_2382	0.79	+1.1
2,864,328	-		Sama_2382	0.79	+0.1
2,864,328	-		Sama_2382	0.79	-0.0
2,864,376	+		Sama_2382	0.81	-0.9
2,864,377	-		Sama_2382	0.81	-2.5
2,864,412	+		Sama_2382	0.83	-2.0
2,864,413	-		Sama_2382	0.83	+2.5
2,864,427	+		Sama_2382	0.84	-1.5
2,864,427	+		Sama_2382	0.84	-1.3
2,864,428	-		Sama_2382	0.84	+1.5
2,864,505	+		Sama_2382	0.88	-3.3
2,864,518	-		Sama_2382	0.88	-2.3
2,864,518	-		Sama_2382	0.88	+1.4
2,864,519	+		Sama_2382	0.88	+1.1
2,864,519	+		Sama_2382	0.88	+2.0
2,864,519	+		Sama_2382	0.88	+0.9
2,864,519	+		Sama_2382	0.88	-1.7
2,864,519	+		Sama_2382	0.88	-0.8
2,864,519	+		Sama_2382	0.88	+1.8
2,864,519	+		Sama_2382	0.88	-1.1
2,864,520	-		Sama_2382	0.89	-1.3
2,864,520	-		Sama_2382	0.89	-0.7
2,864,520	-		Sama_2382	0.89	-1.7
2,864,520	-		Sama_2382	0.89	-1.3
2,864,520	-		Sama_2382	0.89	+0.4
2,864,520	-		Sama_2382	0.89	-2.9
2,864,520	-		Sama_2382	0.89	+0.5
2,864,592	-				-1.2
2,864,592	-				+1.3
2,864,596	+				+3.3
2,864,597	-				+1.2
2,864,597	-				+0.0
2,864,600	-				-0.1
2,864,642	+				-2.1
2,864,643	-				+0.7
2,864,643	-				+0.0
2,864,643	-				+1.5
2,864,645	-				-1.3
2,864,645	-				+3.6
2,864,645	-				+0.1
2,864,645	-				+0.2
2,864,645	-				+2.0
2,864,667	+				+1.7
2,864,745	+				-1.7
2,864,746	-				+1.5
2,864,746	-				-0.5
2,864,764	-				+2.5
2,864,764	-				+1.1
2,864,784	+		Sama_2383	0.19	-1.3
2,864,784	+		Sama_2383	0.19	+1.2
2,864,821	+		Sama_2383	0.36	+2.5
2,864,822	-		Sama_2383	0.36	-1.1
2,864,876	+		Sama_2383	0.61	-0.9
2,864,876	+		Sama_2383	0.61	+1.5
2,864,876	+		Sama_2383	0.61	-1.9
2,864,877	-		Sama_2383	0.62	-2.5
2,864,877	-		Sama_2383	0.62	-0.1
2,864,896	+		Sama_2383	0.70	-0.9
2,864,897	-		Sama_2383	0.71	-0.7
2,864,897	-		Sama_2383	0.71	-0.9
2,864,898	+		Sama_2383	0.71	+1.1
2,864,898	+		Sama_2383	0.71	-0.9
2,864,971	+				-0.5
2,864,972	-				+2.0
2,865,007	+				-1.0
2,865,007	+				+1.5
2,865,007	+				+0.3
2,865,007	+				+0.2
2,865,007	+				+1.1
2,865,007	+				-0.5
2,865,007	+				+0.7
2,865,007	+				-1.5
2,865,008	-				-0.0
2,865,008	-				+3.2
2,865,053	+				+1.0
2,865,054	-				-1.1
2,865,054	-				+1.2
2,865,066	+				+2.1
2,865,066	+				-2.0
2,865,067	-				-2.1
2,865,067	-				+0.0
2,865,129	-		Sama_2384	0.15	-1.3
2,865,189	+		Sama_2384	0.22	-0.1
2,865,189	+		Sama_2384	0.22	+1.6
2,865,190	-		Sama_2384	0.22	+0.4
2,865,190	-		Sama_2384	0.22	+0.3
2,865,227	+		Sama_2384	0.27	-2.3
2,865,227	+		Sama_2384	0.27	-1.5
2,865,227	+		Sama_2384	0.27	-0.9
2,865,227	+		Sama_2384	0.27	+0.2
2,865,227	+		Sama_2384	0.27	-0.1
2,865,227	+		Sama_2384	0.27	+1.7
2,865,228	-		Sama_2384	0.27	-0.1
2,865,228	-		Sama_2384	0.27	-0.9
2,865,228	-		Sama_2384	0.27	-1.7
2,865,228	-		Sama_2384	0.27	-3.9
2,865,302	+		Sama_2384	0.36	+0.2
2,865,303	-		Sama_2384	0.36	-1.9
2,865,303	-		Sama_2384	0.36	-1.5
2,865,303	-		Sama_2384	0.36	-0.5
2,865,317	+		Sama_2384	0.38	-1.3
2,865,317	+		Sama_2384	0.38	-2.4
2,865,317	+		Sama_2384	0.38	-0.1
2,865,317	+		Sama_2384	0.38	+1.2
2,865,318	-		Sama_2384	0.38	-0.9
2,865,318	-		Sama_2384	0.38	+0.1
2,865,318	-		Sama_2384	0.38	-1.5
2,865,318	-		Sama_2384	0.38	+0.8
2,865,318	-		Sama_2384	0.38	-1.2
2,865,318	-		Sama_2384	0.38	+0.5
2,865,334	+		Sama_2384	0.40	-0.3
2,865,348	+		Sama_2384	0.42	-1.6
2,865,374	-		Sama_2384	0.45	-2.1
2,865,374	-		Sama_2384	0.45	-2.5
2,865,485	+		Sama_2384	0.59	-2.0
2,865,486	-		Sama_2384	0.60	-1.5
2,865,486	-		Sama_2384	0.60	+0.1
2,865,493	+		Sama_2384	0.60	+0.5
2,865,493	+		Sama_2384	0.60	+1.3
2,865,493	+		Sama_2384	0.60	-0.5
2,865,494	-		Sama_2384	0.61	-1.8
2,865,494	-		Sama_2384	0.61	-0.0
2,865,494	-		Sama_2384	0.61	-0.7
2,865,494	-		Sama_2384	0.61	+0.6
2,865,494	-		Sama_2384	0.61	-2.5
2,865,494	-		Sama_2384	0.61	-2.1
2,865,494	-		Sama_2384	0.61	-1.1
2,865,494	-		Sama_2384	0.61	-0.5
2,865,494	-		Sama_2384	0.61	-0.5
2,865,494	-		Sama_2384	0.61	+0.2
2,865,494	-		Sama_2384	0.61	-0.1
2,865,528	+		Sama_2384	0.65	+1.5
2,865,529	-		Sama_2384	0.65	-1.1
2,865,529	-		Sama_2384	0.65	-1.0
2,865,529	-		Sama_2384	0.65	-2.3
2,865,594	+		Sama_2384	0.73	+0.1
2,865,595	-		Sama_2384	0.73	-1.1
2,865,614	+		Sama_2384	0.76	-0.1
2,865,615	-		Sama_2384	0.76	-1.0
2,865,615	-		Sama_2384	0.76	-1.1
2,865,615	-		Sama_2384	0.76	-0.8
2,865,615	-		Sama_2384	0.76	-0.0
2,865,615	-		Sama_2384	0.76	+5.0
2,865,633	+		Sama_2384	0.78	+0.3
2,865,633	+		Sama_2384	0.78	+1.8
2,865,665	-		Sama_2384	0.82	+0.0
2,865,679	-		Sama_2384	0.84	-0.1
2,865,679	-		Sama_2384	0.84	-0.9
2,865,679	-		Sama_2384	0.84	-1.1
2,865,714	-		Sama_2384	0.88	-2.0
2,865,773	+				-2.4
2,865,774	-				-0.1
2,865,799	+				+1.7
2,865,800	-				+2.1
2,865,859	-				+0.5
2,865,859	-				+0.5
2,865,890	+				+1.1
2,865,910	-				+1.5
2,865,915	+				-0.3
2,865,916	-				-1.5
2,865,942	+				-0.4
2,865,942	+				-0.3
2,865,946	+				+1.5
2,865,946	+				+0.5
2,865,946	+				-1.3
2,865,946	+				-2.9
2,865,947	-				-0.5
2,865,947	-				-1.3
2,865,970	-				+0.1
2,866,472	+		Sama_2385	0.72	+0.1
2,866,473	-		Sama_2385	0.72	+3.5
2,866,491	-		Sama_2385	0.76	-1.9
2,866,620	+				-0.4
2,866,671	+				-0.1
2,866,671	+				-1.1
2,866,672	-				-0.3
2,866,689	-				+0.4
2,866,689	-				-0.5
2,866,689	-				-0.1
2,866,689	-				+1.2
2,866,709	+				+0.2
2,866,709	+				+1.5
2,866,709	+				-1.9
2,866,710	-				+1.0
2,866,710	-				-1.9
2,866,712	-				-0.9
2,866,751	+				-0.5
2,866,752	-				-1.7
2,866,752	-				-0.5