Strain Fitness in Shewanella amazonensis SB2B around Sama_2201

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
2,657,871	-		Sama_2200	0.42	-2.1
2,657,898	-		Sama_2200	0.44	-1.7
2,657,921	+		Sama_2200	0.46	-2.7
2,658,136	+		Sama_2200	0.64	-1.2
2,658,137	-		Sama_2200	0.64	-1.5
2,658,137	-		Sama_2200	0.64	-0.2
2,658,137	-		Sama_2200	0.64	-0.1
2,658,138	+		Sama_2200	0.64	-0.0
2,658,138	+		Sama_2200	0.64	+2.7
2,658,138	+		Sama_2200	0.64	-1.2
2,658,138	+		Sama_2200	0.64	-2.1
2,658,138	+		Sama_2200	0.64	-0.2
2,658,138	+		Sama_2200	0.64	+0.6
2,658,139	-		Sama_2200	0.64	-0.2
2,658,139	-		Sama_2200	0.64	+0.0
2,658,139	-		Sama_2200	0.64	-0.5
2,658,139	-		Sama_2200	0.64	-1.4
2,658,139	-		Sama_2200	0.64	-0.7
2,658,139	-		Sama_2200	0.64	-1.5
2,658,139	-		Sama_2200	0.64	+0.1
2,658,139	-		Sama_2200	0.64	+0.0
2,658,210	-		Sama_2200	0.70	-2.2
2,658,311	-		Sama_2200	0.78	-2.4
2,658,321	+		Sama_2200	0.79	-1.0
2,658,321	+		Sama_2200	0.79	-0.2
2,658,321	+		Sama_2200	0.79	-1.8
2,658,322	-		Sama_2200	0.79	-2.0
2,658,322	-		Sama_2200	0.79	+0.5
2,658,322	-		Sama_2200	0.79	-2.0
2,658,323	+		Sama_2200	0.79	-1.7
2,658,323	+		Sama_2200	0.79	-0.0
2,658,324	-		Sama_2200	0.79	-2.5
2,658,324	-		Sama_2200	0.79	+3.3
2,658,324	-		Sama_2200	0.79	-0.6
2,658,343	+		Sama_2200	0.81	-0.2
2,658,571	+				+0.8
2,658,572	-				+0.7
2,658,621	-				+0.9
2,658,696	+				+1.5
2,658,772	+				+0.3
2,658,838	+		Sama_2201	0.10	-1.5
2,658,896	+		Sama_2201	0.17	-0.2
2,658,896	+		Sama_2201	0.17	-1.7
2,658,896	+		Sama_2201	0.17	-0.7
2,658,896	+		Sama_2201	0.17	+0.1
2,658,896	+		Sama_2201	0.17	+0.3
2,658,896	+		Sama_2201	0.17	-2.1
2,658,897	-		Sama_2201	0.17	-2.5
2,658,897	-		Sama_2201	0.17	-1.4
2,658,897	-		Sama_2201	0.17	-1.8
2,658,897	-		Sama_2201	0.17	-0.2
2,658,945	-		Sama_2201	0.22	-2.4
2,659,059	-		Sama_2201	0.35	-1.5
2,659,066	-		Sama_2201	0.36	-2.9
2,659,066	-		Sama_2201	0.36	-1.5
2,659,066	-		Sama_2201	0.36	-1.2
2,659,066	-		Sama_2201	0.36	+3.3
2,659,066	-		Sama_2201	0.36	-3.2
2,659,131	+		Sama_2201	0.43	-1.8
2,659,131	+		Sama_2201	0.43	+0.6
2,659,131	+		Sama_2201	0.43	-2.1
2,659,132	-		Sama_2201	0.43	-0.2
2,659,173	+		Sama_2201	0.48	-0.6
2,659,173	+		Sama_2201	0.48	-2.1
2,659,173	+		Sama_2201	0.48	-1.7
2,659,173	+		Sama_2201	0.48	-0.5
2,659,174	-		Sama_2201	0.48	-0.2
2,659,174	-		Sama_2201	0.48	-1.2
2,659,174	-		Sama_2201	0.48	+1.3
2,659,174	-		Sama_2201	0.48	-1.8
2,659,174	-		Sama_2201	0.48	-2.0
2,659,177	+		Sama_2201	0.48	-0.9
2,659,178	-		Sama_2201	0.48	-1.1
2,659,178	-		Sama_2201	0.48	-1.4
2,659,248	+		Sama_2201	0.56	-0.7
2,659,249	-		Sama_2201	0.56	-0.7
2,659,326	+		Sama_2201	0.65	-0.2
2,659,327	-		Sama_2201	0.65	-0.7
2,659,327	-		Sama_2201	0.65	-0.2
2,659,341	+		Sama_2201	0.66	+1.2
2,659,341	+		Sama_2201	0.66	-2.1
2,659,342	-		Sama_2201	0.66	+0.3
2,659,342	-		Sama_2201	0.66	-1.0
2,659,342	-		Sama_2201	0.66	+2.0
2,659,342	-		Sama_2201	0.66	-0.2
2,659,342	-		Sama_2201	0.66	-0.5
2,659,342	-		Sama_2201	0.66	+0.3
2,659,345	+		Sama_2201	0.67	-1.0
2,659,346	-		Sama_2201	0.67	-1.2
2,659,346	-		Sama_2201	0.67	-0.7
2,659,398	+		Sama_2201	0.73	+0.3
2,659,399	-		Sama_2201	0.73	-2.7
2,659,436	+		Sama_2201	0.77	-1.0
2,659,442	-		Sama_2201	0.77	-0.3
2,659,483	+		Sama_2201	0.82	+0.3
2,659,488	+		Sama_2201	0.83	+1.8
2,659,489	-		Sama_2201	0.83	+0.3
2,659,495	-		Sama_2201	0.83	-2.8
2,659,531	-		Sama_2201	0.87	-3.0
2,659,531	-		Sama_2201	0.87	-1.8
2,659,542	-		Sama_2201	0.89	+2.4
2,659,542	-		Sama_2201	0.89	-2.5
2,659,542	-		Sama_2201	0.89	-1.6
2,659,542	-		Sama_2201	0.89	-3.3
2,659,542	-		Sama_2201	0.89	+0.3
2,659,635	+				-0.2
2,659,635	+				-1.7
2,659,644	+				-1.1
2,659,644	+				-2.5
2,659,644	+				-0.7
2,659,644	+				-1.8
2,659,645	-				-1.2
2,659,645	-				-1.5
2,659,645	-				+0.3
2,659,663	+				-0.2
2,659,663	+				+0.3
2,659,664	-				+0.5
2,659,706	+				-0.7
2,659,707	-				+0.4
2,659,741	+				-0.2
2,659,741	+				+0.7
2,659,741	+				-1.0
2,659,742	-				+0.3
2,659,742	-				-0.7
2,659,745	+				+1.5
2,659,746	-				+0.8
2,659,775	-				-2.1
2,659,805	-				-0.2
2,659,889	+		Sama_2202	0.15	-0.6
2,659,890	-		Sama_2202	0.15	+1.3
2,659,893	-		Sama_2202	0.15	-1.5
2,659,920	-		Sama_2202	0.17	+3.9
2,660,035	+		Sama_2202	0.24	+0.5
2,660,035	+		Sama_2202	0.24	+0.8
2,660,036	-		Sama_2202	0.24	-2.6
2,660,036	-		Sama_2202	0.24	+1.3
2,660,165	+		Sama_2202	0.33	-1.1
2,660,166	-		Sama_2202	0.33	-0.7
2,660,247	+		Sama_2202	0.38	-1.2
2,660,247	+		Sama_2202	0.38	-0.7
2,660,247	+		Sama_2202	0.38	-0.7
2,660,248	-		Sama_2202	0.38	-0.5
2,660,248	-		Sama_2202	0.38	-0.5
2,660,248	-		Sama_2202	0.38	-0.8
2,660,291	+		Sama_2202	0.41	+1.1
2,660,292	-		Sama_2202	0.41	+0.2
2,660,388	+		Sama_2202	0.48	-0.8
2,660,388	+		Sama_2202	0.48	+1.7
2,660,388	+		Sama_2202	0.48	-1.1
2,660,388	+		Sama_2202	0.48	-1.0
2,660,389	-		Sama_2202	0.48	+0.9
2,660,389	-		Sama_2202	0.48	-0.5
2,660,389	-		Sama_2202	0.48	-1.0
2,660,390	+		Sama_2202	0.48	-1.4
2,660,390	+		Sama_2202	0.48	-1.8
2,660,390	+		Sama_2202	0.48	-0.7
2,660,391	-		Sama_2202	0.48	-0.7
2,660,391	-		Sama_2202	0.48	+1.6
2,660,391	-		Sama_2202	0.48	+0.3
2,660,392	+		Sama_2202	0.48	-3.1
2,660,392	+		Sama_2202	0.48	+0.5
2,660,392	+		Sama_2202	0.48	-2.6
2,660,392	+		Sama_2202	0.48	-1.5
2,660,393	-		Sama_2202	0.48	+1.3
2,660,393	-		Sama_2202	0.48	+0.2
2,660,393	-		Sama_2202	0.48	+1.6
2,660,393	-		Sama_2202	0.48	-1.0
2,660,393	-		Sama_2202	0.48	+2.5
2,660,393	-		Sama_2202	0.48	+0.4
2,660,393	-		Sama_2202	0.48	+1.1
2,660,437	+		Sama_2202	0.51	+0.2
2,660,437	+		Sama_2202	0.51	-0.4
2,660,437	+		Sama_2202	0.51	+0.6
2,660,437	+		Sama_2202	0.51	+0.1
2,660,437	+		Sama_2202	0.51	+2.5
2,660,437	+		Sama_2202	0.51	-0.9
2,660,437	+		Sama_2202	0.51	-1.7
2,660,438	-		Sama_2202	0.51	-0.5
2,660,438	-		Sama_2202	0.51	+1.9
2,660,438	-		Sama_2202	0.51	+0.1
2,660,438	-		Sama_2202	0.51	-0.7
2,660,438	-		Sama_2202	0.51	-1.0
2,660,438	-		Sama_2202	0.51	+0.6
2,660,438	-		Sama_2202	0.51	+2.2
2,660,438	-		Sama_2202	0.51	-1.5
2,660,495	-		Sama_2202	0.55	+1.2
2,660,516	-		Sama_2202	0.56	+0.3
2,660,544	+		Sama_2202	0.58	-1.8
2,660,545	-		Sama_2202	0.58	+1.3
2,660,545	-		Sama_2202	0.58	+4.1
2,660,545	-		Sama_2202	0.58	+1.6
2,660,586	+		Sama_2202	0.61	+1.5
2,660,586	+		Sama_2202	0.61	-1.6
2,660,586	+		Sama_2202	0.61	-1.0
2,660,587	-		Sama_2202	0.61	+1.8
2,660,608	+		Sama_2202	0.62	-1.7
2,660,608	+		Sama_2202	0.62	-1.0
2,660,609	-		Sama_2202	0.62	+0.3