Strain Fitness in Shewanella amazonensis SB2B around Sama_1503

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,821,427	+		Sama_1502	0.52	+0.4
1,821,427	+		Sama_1502	0.52	-1.7
1,821,428	-		Sama_1502	0.52	+0.8
1,821,433	+		Sama_1502	0.52	-0.3
1,821,433	+		Sama_1502	0.52	-1.2
1,821,520	+		Sama_1502	0.58	-1.7
1,821,520	+		Sama_1502	0.58	-0.1
1,821,520	+		Sama_1502	0.58	+0.5
1,821,520	+		Sama_1502	0.58	-0.2
1,821,520	+		Sama_1502	0.58	-1.7
1,821,520	+		Sama_1502	0.58	-1.3
1,821,521	-		Sama_1502	0.58	-1.0
1,821,521	-		Sama_1502	0.58	+3.8
1,821,524	+		Sama_1502	0.58	-0.5
1,821,525	-		Sama_1502	0.58	+1.5
1,821,525	-		Sama_1502	0.58	+0.1
1,821,539	+		Sama_1502	0.59	+1.7
1,821,540	-		Sama_1502	0.59	+0.7
1,821,618	+		Sama_1502	0.64	+0.4
1,821,619	-		Sama_1502	0.64	-0.6
1,821,657	+		Sama_1502	0.66	-1.5
1,821,658	-		Sama_1502	0.66	+0.7
1,821,870	+		Sama_1502	0.80	+1.7
1,821,870	+		Sama_1502	0.80	+1.6
1,821,871	-		Sama_1502	0.80	+0.9
1,821,936	+		Sama_1502	0.84	+1.1
1,822,020	+		Sama_1502	0.90	+0.1
1,822,020	+		Sama_1502	0.90	+0.6
1,822,020	+		Sama_1502	0.90	+2.1
1,822,020	+		Sama_1502	0.90	-1.2
1,822,021	-		Sama_1502	0.90	-1.0
1,822,021	-		Sama_1502	0.90	+0.4
1,822,116	+				+1.8
1,822,117	-				-0.5
1,822,124	+				+0.4
1,822,125	-				-1.2
1,822,198	+				+0.1
1,822,198	+				+0.5
1,822,198	+				-0.7
1,822,198	+				+3.6
1,822,198	+				-0.2
1,822,198	+				+1.2
1,822,254	+				+1.1
1,822,254	+				-0.1
1,822,254	+				-2.1
1,822,272	+				-2.2
1,822,272	+				+2.1
1,822,273	-				-0.5
1,822,307	-				-0.7
1,822,326	+				-1.2
1,822,326	+				+0.5
1,822,327	-				-0.5
1,822,349	+				+0.8
1,822,397	-				-3.0
1,822,418	-				-0.5
1,822,437	+				-0.5
1,822,437	+				-0.5
1,822,438	-				-1.6
1,822,438	-				-3.6
1,822,466	-				-2.2
1,822,466	-				-2.1
1,822,515	-				+1.1
1,822,522	-				-1.9
1,822,522	-				-1.7
1,822,522	-				-1.5
1,822,522	-				-2.2
1,822,574	+				-0.9
1,822,575	-				-3.5
1,822,619	-				-1.9
1,822,663	+				-0.5
1,822,663	+				-1.2
1,822,664	-				-2.5
1,822,664	-				-1.2
1,822,664	-				-2.6
1,822,664	-				-1.9
1,822,754	-		Sama_1503	0.13	-1.5
1,822,754	-		Sama_1503	0.13	-3.1
1,822,788	+		Sama_1503	0.14	-1.9
1,822,788	+		Sama_1503	0.14	+0.1
1,822,789	-		Sama_1503	0.14	-1.9
1,822,789	-		Sama_1503	0.14	+0.1
1,822,789	-		Sama_1503	0.14	-2.1
1,822,800	-		Sama_1503	0.14	-1.5
1,822,831	+		Sama_1503	0.15	+0.1
1,822,832	-		Sama_1503	0.15	+0.1
1,822,993	+		Sama_1503	0.21	+0.1
1,822,993	+		Sama_1503	0.21	-0.9
1,822,993	+		Sama_1503	0.21	+0.1
1,822,993	+		Sama_1503	0.21	-0.9
1,822,993	+		Sama_1503	0.21	-1.2
1,822,994	-		Sama_1503	0.21	-1.7
1,823,072	+		Sama_1503	0.24	-1.2
1,823,114	+		Sama_1503	0.26	-0.9
1,823,115	-		Sama_1503	0.26	-2.2
1,823,123	-		Sama_1503	0.26	-1.5
1,823,183	+		Sama_1503	0.28	-0.9
1,823,184	-		Sama_1503	0.28	-2.6
1,823,219	+		Sama_1503	0.30	-0.5
1,823,220	-		Sama_1503	0.30	-3.1
1,823,220	-		Sama_1503	0.30	-0.5
1,823,220	-		Sama_1503	0.30	-0.5
1,823,220	-		Sama_1503	0.30	+1.1
1,823,220	-		Sama_1503	0.30	-0.9
1,823,262	+		Sama_1503	0.31	+0.1
1,823,263	-		Sama_1503	0.31	-1.7
1,823,294	-		Sama_1503	0.33	-1.3
1,823,296	-		Sama_1503	0.33	-3.6
1,823,296	-		Sama_1503	0.33	-1.2
1,823,296	-		Sama_1503	0.33	+0.1
1,823,296	-		Sama_1503	0.33	-1.2
1,823,296	-		Sama_1503	0.33	-1.2
1,823,337	-		Sama_1503	0.34	-2.5
1,823,337	-		Sama_1503	0.34	+0.1
1,823,344	-		Sama_1503	0.34	+0.1
1,823,369	-		Sama_1503	0.35	-1.9
1,823,380	-		Sama_1503	0.36	+0.5
1,823,422	+		Sama_1503	0.37	-0.5
1,823,422	+		Sama_1503	0.37	-0.9
1,823,427	+		Sama_1503	0.37	+0.1
1,823,428	-		Sama_1503	0.37	-0.2
1,823,428	-		Sama_1503	0.37	+0.1
1,823,428	-		Sama_1503	0.37	-2.2
1,823,440	-		Sama_1503	0.38	-2.2
1,823,440	-		Sama_1503	0.38	+1.1
1,823,440	-		Sama_1503	0.38	-1.7
1,823,479	+		Sama_1503	0.39	-0.5
1,823,479	+		Sama_1503	0.39	+0.8
1,823,484	-		Sama_1503	0.40	-0.9
1,823,492	-		Sama_1503	0.40	-0.5
1,823,538	-		Sama_1503	0.42	-1.9
1,823,538	-		Sama_1503	0.42	-1.2
1,823,538	-		Sama_1503	0.42	-2.3
1,823,588	-		Sama_1503	0.43	-0.5
1,823,588	-		Sama_1503	0.43	-1.2
1,823,588	-		Sama_1503	0.43	-2.2
1,823,639	+		Sama_1503	0.45	-0.5
1,823,658	+		Sama_1503	0.46	-0.9
1,823,659	-		Sama_1503	0.46	+0.1
1,823,698	+		Sama_1503	0.47	-1.2
1,823,699	-		Sama_1503	0.48	-1.9
1,823,699	-		Sama_1503	0.48	-1.5
1,823,699	-		Sama_1503	0.48	-1.2
1,823,712	+		Sama_1503	0.48	-0.9
1,823,712	+		Sama_1503	0.48	-1.9
1,823,713	-		Sama_1503	0.48	-1.7
1,823,729	+		Sama_1503	0.49	+1.1
1,823,729	+		Sama_1503	0.49	-1.5
1,823,730	-		Sama_1503	0.49	-2.5
1,823,730	-		Sama_1503	0.49	-2.1
1,823,770	+		Sama_1503	0.50	-0.9
1,823,771	-		Sama_1503	0.50	-2.3
1,823,787	+		Sama_1503	0.51	+1.1
1,823,809	+		Sama_1503	0.52	-0.5
1,823,809	+		Sama_1503	0.52	+1.1
1,823,809	+		Sama_1503	0.52	-0.5
1,823,809	+		Sama_1503	0.52	+1.1
1,823,809	+		Sama_1503	0.52	-2.6
1,823,809	+		Sama_1503	0.52	-2.7
1,823,810	-		Sama_1503	0.52	-2.1
1,823,810	-		Sama_1503	0.52	-3.3
1,823,810	-		Sama_1503	0.52	+0.1
1,823,813	+		Sama_1503	0.52	-0.9
1,823,813	+		Sama_1503	0.52	-2.3
1,823,814	-		Sama_1503	0.52	-1.9
1,823,833	+		Sama_1503	0.52	-1.2
1,823,834	-		Sama_1503	0.53	-1.2
1,823,838	+		Sama_1503	0.53	-1.2
1,823,857	+		Sama_1503	0.53	-0.6
1,823,857	+		Sama_1503	0.53	-2.1
1,823,857	+		Sama_1503	0.53	-2.2
1,823,858	-		Sama_1503	0.53	-0.9
1,823,858	-		Sama_1503	0.53	-2.9
1,823,858	-		Sama_1503	0.53	-1.5
1,823,858	-		Sama_1503	0.53	-3.0
1,823,858	-		Sama_1503	0.53	-3.6
1,823,892	-		Sama_1503	0.55	-1.5
1,823,892	-		Sama_1503	0.55	-0.5
1,823,956	+		Sama_1503	0.57	+0.1
1,823,956	+		Sama_1503	0.57	+2.1
1,823,956	+		Sama_1503	0.57	+2.1
1,823,956	+		Sama_1503	0.57	-2.6
1,823,956	+		Sama_1503	0.57	+0.1
1,823,956	+		Sama_1503	0.57	-1.5
1,823,957	-		Sama_1503	0.57	-3.4
1,823,957	-		Sama_1503	0.57	-1.7
1,823,957	-		Sama_1503	0.57	-1.5
1,823,957	-		Sama_1503	0.57	-1.5
1,823,957	-		Sama_1503	0.57	-0.5
1,823,957	-		Sama_1503	0.57	-3.4
1,823,957	-		Sama_1503	0.57	-0.5
1,823,957	-		Sama_1503	0.57	-1.9
1,823,957	-		Sama_1503	0.57	-0.5
1,823,957	-		Sama_1503	0.57	-1.2
1,823,957	-		Sama_1503	0.57	-2.8
1,823,959	+		Sama_1503	0.57	-1.5
1,823,959	+		Sama_1503	0.57	+1.9
1,823,959	+		Sama_1503	0.57	-0.5
1,823,959	+		Sama_1503	0.57	-0.5
1,823,960	-		Sama_1503	0.57	-0.5
1,823,960	-		Sama_1503	0.57	-0.2
1,823,960	-		Sama_1503	0.57	-1.2
1,823,960	-		Sama_1503	0.57	-1.7
1,823,960	-		Sama_1503	0.57	-1.5
1,823,960	-		Sama_1503	0.57	-2.5
1,823,962	+		Sama_1503	0.57	+0.1
1,823,963	-		Sama_1503	0.57	-2.1
1,823,963	-		Sama_1503	0.57	-2.8
1,823,963	-		Sama_1503	0.57	-0.9
1,824,085	+		Sama_1503	0.62	-1.2
1,824,085	+		Sama_1503	0.62	+1.1
1,824,086	-		Sama_1503	0.62	-0.9
1,824,086	-		Sama_1503	0.62	-1.7
1,824,086	-		Sama_1503	0.62	-1.1
1,824,086	-		Sama_1503	0.62	+0.1
1,824,086	-		Sama_1503	0.62	-1.9
1,824,086	-		Sama_1503	0.62	-2.7
1,824,086	-		Sama_1503	0.62	-2.7
1,824,086	-		Sama_1503	0.62	-2.2
1,824,089	+		Sama_1503	0.62	+1.1
1,824,089	+		Sama_1503	0.62	+0.1
1,824,090	-		Sama_1503	0.62	-0.5
1,824,090	-		Sama_1503	0.62	-1.2
1,824,116	+		Sama_1503	0.63	+6.2
1,824,117	-		Sama_1503	0.63	-2.6
1,824,136	+		Sama_1503	0.64	-0.5
1,824,137	-		Sama_1503	0.64	-2.1
1,824,137	-		Sama_1503	0.64	-2.5
1,824,137	-		Sama_1503	0.64	-1.2
1,824,143	+		Sama_1503	0.64	+1.1
1,824,144	-		Sama_1503	0.64	-2.2
1,824,144	-		Sama_1503	0.64	-0.5
1,824,178	+		Sama_1503	0.65	+0.4
1,824,178	+		Sama_1503	0.65	-0.5
1,824,178	+		Sama_1503	0.65	-2.3
1,824,179	-		Sama_1503	0.65	-1.6
1,824,179	-		Sama_1503	0.65	+1.1
1,824,179	-		Sama_1503	0.65	-0.9
1,824,280	+		Sama_1503	0.69	-1.2
1,824,280	+		Sama_1503	0.69	-1.2
1,824,293	+		Sama_1503	0.70	-0.5
1,824,294	-		Sama_1503	0.70	-3.2
1,824,335	+		Sama_1503	0.71	-0.5
1,824,361	+		Sama_1503	0.72	+2.1
1,824,361	+		Sama_1503	0.72	-0.9
1,824,361	+		Sama_1503	0.72	-1.9
1,824,370	+		Sama_1503	0.72	-1.1
1,824,371	-		Sama_1503	0.72	-2.3
1,824,371	-		Sama_1503	0.72	-0.9
1,824,380	-		Sama_1503	0.73	-0.9
1,824,388	+		Sama_1503	0.73	-0.5
1,824,418	-		Sama_1503	0.74	-0.9
1,824,470	+		Sama_1503	0.76	-1.5
1,824,471	-		Sama_1503	0.76	-2.1
1,824,471	-		Sama_1503	0.76	-2.5
1,824,471	-		Sama_1503	0.76	-1.5
1,824,471	-		Sama_1503	0.76	-1.5
1,824,515	+		Sama_1503	0.78	-0.8
1,824,516	-		Sama_1503	0.78	-0.9
1,824,559	+		Sama_1503	0.79	-1.5
1,824,560	-		Sama_1503	0.79	-1.9
1,824,560	-		Sama_1503	0.79	-0.5
1,824,602	+		Sama_1503	0.81	+0.1
1,824,602	+		Sama_1503	0.81	-2.3
1,824,615	+		Sama_1503	0.81	-0.5
1,824,616	-		Sama_1503	0.81	-2.3
1,824,616	-		Sama_1503	0.81	-1.5
1,824,616	-		Sama_1503	0.81	-2.2
1,824,616	-		Sama_1503	0.81	-1.2
1,824,634	-		Sama_1503	0.82	+0.1
1,824,753	-		Sama_1503	0.87	-1.6
1,824,861	-				-0.9
1,824,861	-				-2.3
1,824,861	-				-0.9
1,824,890	+				-1.5
1,824,891	-				-0.9
1,824,968	+				-1.5
1,824,968	+				-0.2
1,824,969	-				-1.2
1,824,969	-				+0.1
1,824,969	-				-1.7
1,824,971	+				-0.9
1,824,971	+				+0.1
1,824,972	-				-2.5
1,825,000	-				+2.5
1,825,046	+				-1.9
1,825,046	+				+0.1
1,825,046	+				+1.1
1,825,047	-				-0.5
1,825,050	+				-1.7
1,825,050	+				-1.5
1,825,050	+				-0.9
1,825,050	+				+0.7
1,825,050	+				-1.2
1,825,051	-				-2.1
1,825,051	-				-1.5
1,825,051	-				-1.2
1,825,051	-				-1.5
1,825,119	-				+0.1
1,825,119	-				-1.9
1,825,119	-				+0.1
1,825,119	-				-2.1
1,825,134	+				-0.9
1,825,135	-				-0.9
1,825,135	-				-2.8
1,825,135	-				+0.5
1,825,135	-				-2.5
1,825,154	+				-1.5
1,825,182	-				-3.6
1,825,215	-				-0.5
1,825,215	-				-0.9
1,825,215	-				-1.7
1,825,216	+				-1.2
1,825,217	-				-2.7
1,825,217	-				-2.1
1,825,217	-				-0.5
1,825,232	-				-0.5
1,825,232	-				-1.2
1,825,232	-				-1.7
1,825,232	-				-1.5
1,825,232	-				-2.2
1,825,232	-				-1.2
1,825,256	-				-0.5
1,825,345	+				-0.5
1,825,362	+				-2.7
1,825,485	+				+0.2
1,825,526	+				-2.1
1,825,528	+				-1.5
1,825,581	-				-0.7
1,825,622	+				-0.4
1,825,675	-				+1.1
1,825,844	-		Sama_1504	0.19	-1.7
1,825,844	-		Sama_1504	0.19	+0.1
1,825,899	+		Sama_1504	0.24	-2.6
1,825,899	+		Sama_1504	0.24	-0.9
1,825,899	+		Sama_1504	0.24	+2.6
1,825,899	+		Sama_1504	0.24	-2.3
1,825,899	+		Sama_1504	0.24	+0.5
1,825,899	+		Sama_1504	0.24	-1.9
1,825,899	+		Sama_1504	0.24	+2.1
1,825,900	-		Sama_1504	0.25	+2.4
1,825,900	-		Sama_1504	0.25	+1.1
1,825,906	+		Sama_1504	0.25	+0.5
1,825,937	+		Sama_1504	0.28	-1.1
1,825,938	-		Sama_1504	0.28	+0.1
1,825,943	+		Sama_1504	0.29	-0.7
1,825,943	+		Sama_1504	0.29	-0.5
1,825,943	+		Sama_1504	0.29	-0.3
1,825,943	+		Sama_1504	0.29	-0.3
1,825,943	+		Sama_1504	0.29	+1.1
1,825,943	+		Sama_1504	0.29	-0.1
1,825,944	-		Sama_1504	0.29	+1.1
1,825,944	-		Sama_1504	0.29	+4.3
1,825,946	+		Sama_1504	0.29	+1.2
1,825,946	+		Sama_1504	0.29	-2.9
1,825,946	+		Sama_1504	0.29	+0.4
1,825,946	+		Sama_1504	0.29	-1.7
1,826,070	+		Sama_1504	0.41	+0.1
1,826,098	-		Sama_1504	0.44	+1.2