Strain Fitness in Shewanella amazonensis SB2B around Sama_1502

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,819,620	+		Sama_1501	0.27	-1.2
1,819,631	+		Sama_1501	0.29	-1.2
1,819,637	+		Sama_1501	0.29	-0.9
1,819,706	+		Sama_1501	0.37	-0.3
1,819,707	-		Sama_1501	0.37	+0.1
1,819,714	+		Sama_1501	0.38	-0.5
1,819,715	-		Sama_1501	0.38	-1.9
1,819,749	+		Sama_1501	0.41	-2.3
1,819,750	-		Sama_1501	0.42	-0.2
1,819,866	+		Sama_1501	0.54	-0.9
1,819,866	+		Sama_1501	0.54	+1.5
1,819,867	-		Sama_1501	0.54	+0.8
1,819,923	-		Sama_1501	0.60	+0.1
1,820,004	-		Sama_1501	0.69	+0.7
1,820,016	-		Sama_1501	0.71	+1.8
1,820,066	+		Sama_1501	0.76	+1.0
1,820,179	+		Sama_1501	0.88	-2.6
1,820,179	+		Sama_1501	0.88	-1.9
1,820,179	+		Sama_1501	0.88	-1.7
1,820,180	-		Sama_1501	0.89	-1.7
1,820,277	+				-0.9
1,820,277	+				-1.7
1,820,277	+				+1.5
1,820,325	+				-0.5
1,820,325	+				+1.8
1,820,325	+				-3.0
1,820,326	-				-2.5
1,820,326	-				-1.9
1,820,328	-				+0.1
1,820,328	-				-1.0
1,820,348	-				-1.2
1,820,348	-				+0.4
1,820,423	+				-0.1
1,820,460	+				+0.9
1,820,469	+				-1.9
1,820,481	+				-1.7
1,820,516	+				-1.1
1,820,526	+				+0.8
1,820,526	+				-1.1
1,820,543	+				-1.2
1,820,543	+				+0.1
1,820,577	+				-1.2
1,820,577	+				-3.5
1,820,600	+				+0.1
1,820,608	+				+0.7
1,820,608	+				-1.8
1,820,609	-				+2.7
1,820,612	+				+2.1
1,820,613	-				-0.5
1,820,613	-				-1.5
1,820,714	+				+1.8
1,820,749	+				-0.1
1,820,750	-				+1.1
1,820,750	-				+0.9
1,820,911	-		Sama_1502	0.19	+1.6
1,820,926	+		Sama_1502	0.20	-1.9
1,820,926	+		Sama_1502	0.20	-0.5
1,820,926	+		Sama_1502	0.20	+0.2
1,820,926	+		Sama_1502	0.20	-1.7
1,820,926	+		Sama_1502	0.20	+1.0
1,820,926	+		Sama_1502	0.20	+0.0
1,820,926	+		Sama_1502	0.20	-1.5
1,820,926	+		Sama_1502	0.20	-0.7
1,820,927	-		Sama_1502	0.20	-1.2
1,820,927	-		Sama_1502	0.20	-0.5
1,820,928	+		Sama_1502	0.20	-2.6
1,820,928	+		Sama_1502	0.20	-0.5
1,820,928	+		Sama_1502	0.20	+1.4
1,820,929	-		Sama_1502	0.20	+1.7
1,820,929	-		Sama_1502	0.20	-2.1
1,820,929	-		Sama_1502	0.20	+1.7
1,820,929	-		Sama_1502	0.20	-1.1
1,820,929	-		Sama_1502	0.20	+2.9
1,820,946	-		Sama_1502	0.21	-2.3
1,820,980	-		Sama_1502	0.23	-1.7
1,820,988	+		Sama_1502	0.24	+1.3
1,820,988	+		Sama_1502	0.24	-0.9
1,820,989	-		Sama_1502	0.24	-1.2
1,820,989	-		Sama_1502	0.24	-0.9
1,821,038	+		Sama_1502	0.27	-0.8
1,821,038	+		Sama_1502	0.27	+2.5
1,821,038	+		Sama_1502	0.27	-0.9
1,821,038	+		Sama_1502	0.27	-0.3
1,821,038	+		Sama_1502	0.27	-1.9
1,821,038	+		Sama_1502	0.27	-1.2
1,821,039	-		Sama_1502	0.27	-1.7
1,821,039	-		Sama_1502	0.27	-0.9
1,821,043	-		Sama_1502	0.27	+1.6
1,821,048	+		Sama_1502	0.27	-2.4
1,821,048	+		Sama_1502	0.27	+0.9
1,821,048	+		Sama_1502	0.27	-1.2
1,821,048	+		Sama_1502	0.27	-2.2
1,821,048	+		Sama_1502	0.27	+1.8
1,821,050	+		Sama_1502	0.28	-2.2
1,821,050	+		Sama_1502	0.28	+0.8
1,821,050	+		Sama_1502	0.28	-1.7
1,821,050	+		Sama_1502	0.28	-1.2
1,821,051	-		Sama_1502	0.28	+0.2
1,821,051	-		Sama_1502	0.28	+0.7
1,821,060	+		Sama_1502	0.28	+2.0
1,821,061	-		Sama_1502	0.28	-0.2
1,821,174	+		Sama_1502	0.35	-3.4
1,821,174	+		Sama_1502	0.35	+0.2
1,821,175	-		Sama_1502	0.36	-0.8
1,821,175	-		Sama_1502	0.36	+0.7
1,821,191	+		Sama_1502	0.37	+0.9
1,821,192	-		Sama_1502	0.37	-0.9
1,821,192	-		Sama_1502	0.37	+0.1
1,821,192	-		Sama_1502	0.37	-0.5
1,821,202	+		Sama_1502	0.37	+0.0
1,821,232	+		Sama_1502	0.39	+0.1
1,821,232	+		Sama_1502	0.39	-1.0
1,821,232	+		Sama_1502	0.39	-1.7
1,821,232	+		Sama_1502	0.39	+1.5
1,821,233	-		Sama_1502	0.39	-0.5
1,821,233	-		Sama_1502	0.39	-3.0
1,821,233	-		Sama_1502	0.39	+1.1
1,821,233	-		Sama_1502	0.39	+2.4
1,821,233	-		Sama_1502	0.39	-0.5
1,821,335	+		Sama_1502	0.46	-0.8
1,821,335	+		Sama_1502	0.46	-0.5
1,821,335	+		Sama_1502	0.46	+1.7
1,821,336	-		Sama_1502	0.46	+0.8
1,821,336	-		Sama_1502	0.46	+2.4
1,821,336	-		Sama_1502	0.46	-0.9
1,821,336	-		Sama_1502	0.46	-0.9
1,821,336	-		Sama_1502	0.46	+1.4
1,821,339	+		Sama_1502	0.46	+0.5
1,821,339	+		Sama_1502	0.46	-0.5
1,821,339	+		Sama_1502	0.46	+0.7
1,821,339	+		Sama_1502	0.46	-0.9
1,821,340	-		Sama_1502	0.46	-0.5
1,821,340	-		Sama_1502	0.46	+1.8
1,821,354	-		Sama_1502	0.47	-0.2
1,821,360	+		Sama_1502	0.47	-2.5
1,821,361	-		Sama_1502	0.47	-0.7
1,821,382	-		Sama_1502	0.49	-2.6
1,821,391	+		Sama_1502	0.49	+0.9
1,821,427	+		Sama_1502	0.52	+0.4
1,821,427	+		Sama_1502	0.52	-1.7
1,821,428	-		Sama_1502	0.52	+0.8
1,821,433	+		Sama_1502	0.52	-0.3
1,821,433	+		Sama_1502	0.52	-1.2
1,821,520	+		Sama_1502	0.58	-1.7
1,821,520	+		Sama_1502	0.58	-0.1
1,821,520	+		Sama_1502	0.58	+0.5
1,821,520	+		Sama_1502	0.58	-0.2
1,821,520	+		Sama_1502	0.58	-1.7
1,821,520	+		Sama_1502	0.58	-1.3
1,821,521	-		Sama_1502	0.58	-1.0
1,821,521	-		Sama_1502	0.58	+3.8
1,821,524	+		Sama_1502	0.58	-0.5
1,821,525	-		Sama_1502	0.58	+1.5
1,821,525	-		Sama_1502	0.58	+0.1
1,821,539	+		Sama_1502	0.59	+1.7
1,821,540	-		Sama_1502	0.59	+0.7
1,821,618	+		Sama_1502	0.64	+0.4
1,821,619	-		Sama_1502	0.64	-0.6
1,821,657	+		Sama_1502	0.66	-1.5
1,821,658	-		Sama_1502	0.66	+0.7
1,821,870	+		Sama_1502	0.80	+1.7
1,821,870	+		Sama_1502	0.80	+1.6
1,821,871	-		Sama_1502	0.80	+0.9
1,821,936	+		Sama_1502	0.84	+1.1
1,822,020	+		Sama_1502	0.90	+0.1
1,822,020	+		Sama_1502	0.90	+0.6
1,822,020	+		Sama_1502	0.90	+2.1
1,822,020	+		Sama_1502	0.90	-1.2
1,822,021	-		Sama_1502	0.90	-1.0
1,822,021	-		Sama_1502	0.90	+0.4
1,822,116	+				+1.8
1,822,117	-				-0.5
1,822,124	+				+0.4
1,822,125	-				-1.2
1,822,198	+				+0.1
1,822,198	+				+0.5
1,822,198	+				-0.7
1,822,198	+				+3.6
1,822,198	+				-0.2
1,822,198	+				+1.2
1,822,254	+				+1.1
1,822,254	+				-0.1
1,822,254	+				-2.1
1,822,272	+				-2.2
1,822,272	+				+2.1
1,822,273	-				-0.5
1,822,307	-				-0.7
1,822,326	+				-1.2
1,822,326	+				+0.5
1,822,327	-				-0.5
1,822,349	+				+0.8
1,822,397	-				-3.0
1,822,418	-				-0.5
1,822,437	+				-0.5
1,822,437	+				-0.5
1,822,438	-				-1.6
1,822,438	-				-3.6
1,822,466	-				-2.2
1,822,466	-				-2.1
1,822,515	-				+1.1
1,822,522	-				-1.9
1,822,522	-				-1.7
1,822,522	-				-1.5
1,822,522	-				-2.2
1,822,574	+				-0.9
1,822,575	-				-3.5
1,822,619	-				-1.9
1,822,663	+				-0.5
1,822,663	+				-1.2
1,822,664	-				-2.5
1,822,664	-				-1.2
1,822,664	-				-2.6
1,822,664	-				-1.9
1,822,754	-		Sama_1503	0.13	-1.5
1,822,754	-		Sama_1503	0.13	-3.1
1,822,788	+		Sama_1503	0.14	-1.9
1,822,788	+		Sama_1503	0.14	+0.1
1,822,789	-		Sama_1503	0.14	-1.9
1,822,789	-		Sama_1503	0.14	+0.1
1,822,789	-		Sama_1503	0.14	-2.1
1,822,800	-		Sama_1503	0.14	-1.5
1,822,831	+		Sama_1503	0.15	+0.1
1,822,832	-		Sama_1503	0.15	+0.1
1,822,993	+		Sama_1503	0.21	+0.1
1,822,993	+		Sama_1503	0.21	-0.9
1,822,993	+		Sama_1503	0.21	+0.1
1,822,993	+		Sama_1503	0.21	-0.9
1,822,993	+		Sama_1503	0.21	-1.2
1,822,994	-		Sama_1503	0.21	-1.7
1,823,072	+		Sama_1503	0.24	-1.2
1,823,114	+		Sama_1503	0.26	-0.9
1,823,115	-		Sama_1503	0.26	-2.2
1,823,123	-		Sama_1503	0.26	-1.5