Strain Fitness in Shewanella amazonensis SB2B around Sama_1431

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,741,817	+				-0.4
1,741,817	+				+1.1
1,742,099	+		Sama_1430	0.32	+0.1
1,742,100	-		Sama_1430	0.32	+0.1
1,742,100	-		Sama_1430	0.32	+1.1
1,742,689	+				+0.1
1,742,740	+				-2.4
1,742,741	-				-1.4
1,742,741	-				-0.4
1,742,742	+				-2.0
1,742,742	+				-3.0
1,742,742	+				+0.1
1,742,742	+				+2.5
1,742,742	+				+1.1
1,742,742	+				-0.4
1,742,743	-				+0.1
1,742,743	-				+1.4
1,742,743	-				-0.9
1,742,743	-				+0.7
1,742,743	-				-0.4
1,742,743	-				+0.7
1,742,743	-				+0.7
1,742,748	+				+1.1
1,742,748	+				-0.4
1,742,748	+				+1.6
1,742,748	+				+1.6
1,742,748	+				-2.0
1,742,748	+				-1.7
1,742,748	+				+0.1
1,742,748	+				-1.3
1,742,748	+				-1.4
1,742,748	+				-0.4
1,742,748	+				-2.0
1,742,748	+				-2.7
1,742,748	+				-0.6
1,742,748	+				+1.0
1,742,749	-				-1.7
1,742,749	-				-0.3
1,742,749	-				-0.7
1,742,749	-				-1.7
1,742,749	-				-1.4
1,742,749	-				+2.1
1,742,749	-				+4.5
1,742,749	-				-1.2
1,742,749	-				+0.1
1,742,749	-				+2.5
1,742,749	-				-1.4
1,742,749	-				-1.6
1,742,749	-				+0.2
1,742,749	-				-1.4
1,742,749	-				-1.4
1,742,752	+				+1.6
1,742,752	+				-1.2
1,742,752	+				+0.3
1,742,753	-				+3.1
1,742,753	-				-0.1
1,742,753	-				+1.4
1,742,753	-				+0.1
1,742,753	-				-0.3
1,742,753	-				+0.4
1,742,754	+				-0.9
1,742,754	+				+1.5
1,742,755	-				-1.4
1,742,755	-				-2.4
1,742,755	-				-0.4
1,742,755	-				-0.8
1,742,755	-				+0.6
1,742,755	-				+1.1
1,742,761	-				+0.4
1,742,761	-				+1.8
1,742,761	-				-1.9
1,742,761	-				+1.1
1,742,761	-				-0.5
1,742,764	+				-1.2
1,742,764	+				-1.2
1,742,765	-				+2.0
1,742,766	+				-0.2
1,742,766	+				+1.7
1,742,766	+				-0.1
1,742,766	+				-1.2
1,742,766	+				-0.7
1,742,767	-				-0.2
1,742,767	-				+0.5
1,742,767	-				-0.3
1,742,767	-				+2.3
1,742,767	-				+3.0
1,742,767	-				-2.9
1,742,767	-				-0.1
1,742,770	+				-0.9
1,742,770	+				+2.8
1,742,770	+				-0.9
1,742,770	+				-1.9
1,742,770	+				+0.6
1,742,770	+				-1.7
1,742,770	+				-1.4
1,742,770	+				-3.3
1,742,770	+				-1.2
1,742,770	+				-0.9
1,742,770	+				-1.7
1,742,771	-				-2.0
1,742,771	-				-1.4
1,742,771	-				+0.4
1,742,771	-				-1.2
1,742,771	-				-0.2
1,742,771	-				-1.0
1,742,771	-				-2.0
1,742,771	-				+0.6
1,742,771	-				+1.6
1,742,771	-				+0.4
1,742,771	-				-1.2
1,742,791	-				-2.4
1,742,791	-				-0.9
1,742,835	+				+2.5
1,742,851	+				-1.9
1,742,852	-				-2.2
1,742,901	-		Sama_1431	0.11	+0.6
1,742,917	+		Sama_1431	0.13	-2.0
1,742,917	+		Sama_1431	0.13	+1.7
1,742,918	-		Sama_1431	0.13	-0.7
1,742,925	+		Sama_1431	0.14	-1.8
1,742,926	-		Sama_1431	0.14	+2.7
1,742,926	-		Sama_1431	0.14	-2.2
1,742,960	+		Sama_1431	0.17	-2.2
1,742,967	+		Sama_1431	0.18	-0.9
1,742,968	-		Sama_1431	0.18	+1.5
1,742,977	-		Sama_1431	0.19	-3.0
1,743,004	+		Sama_1431	0.22	+3.5
1,743,006	+		Sama_1431	0.22	+2.7
1,743,033	+		Sama_1431	0.25	-1.0
1,743,034	-		Sama_1431	0.25	+1.5
1,743,060	+		Sama_1431	0.28	-2.8
1,743,183	-		Sama_1431	0.42	+1.0
1,743,237	+		Sama_1431	0.48	-0.4
1,743,240	+		Sama_1431	0.48	+1.1
1,743,241	-		Sama_1431	0.48	+0.5
1,743,241	-		Sama_1431	0.48	-1.1
1,743,276	+		Sama_1431	0.52	+2.7
1,743,277	-		Sama_1431	0.52	+3.3
1,743,277	-		Sama_1431	0.52	-1.4
1,743,479	+		Sama_1431	0.74	+1.4
1,743,489	+		Sama_1431	0.75	+0.1
1,743,489	+		Sama_1431	0.75	-0.6
1,743,489	+		Sama_1431	0.75	-2.9
1,743,490	-		Sama_1431	0.75	+0.3
1,743,490	-		Sama_1431	0.75	-1.2
1,743,490	-		Sama_1431	0.75	-1.2
1,743,495	+		Sama_1431	0.76	-1.2
1,743,495	+		Sama_1431	0.76	-0.9
1,743,496	-		Sama_1431	0.76	-1.4
1,743,496	-		Sama_1431	0.76	+1.9
1,743,496	-		Sama_1431	0.76	+2.1
1,743,513	+		Sama_1431	0.78	-0.6
1,743,543	+		Sama_1431	0.81	+0.6
1,743,544	-		Sama_1431	0.81	+0.3
1,743,569	+		Sama_1431	0.84	+3.0
1,743,570	-		Sama_1431	0.84	+3.0
1,743,570	-		Sama_1431	0.84	-0.9
1,743,743	-				-0.3
1,743,743	-				+0.4
1,743,844	-				+0.0
1,743,849	-				+0.1
1,743,849	-				-1.0
1,743,852	+				+2.9
1,743,852	+				+0.1
1,743,852	+				+1.9
1,743,852	+				+1.5
1,743,853	-				-2.9
1,743,853	-				+0.1
1,743,853	-				+0.7
1,743,853	-				+0.1
1,743,898	-		Sama_1432	0.11	+1.1
1,743,899	+		Sama_1432	0.11	-0.6
1,743,936	-		Sama_1432	0.18	+0.1
1,743,943	+		Sama_1432	0.20	+0.3
1,743,943	+		Sama_1432	0.20	-1.4
1,743,943	+		Sama_1432	0.20	+2.1
1,743,943	+		Sama_1432	0.20	+0.1
1,743,944	-		Sama_1432	0.20	-0.4
1,743,944	-		Sama_1432	0.20	-2.4
1,743,963	+		Sama_1432	0.24	-2.7
1,744,015	+		Sama_1432	0.34	-1.2
1,744,016	-		Sama_1432	0.34	+0.1
1,744,053	+		Sama_1432	0.41	+1.3
1,744,095	+		Sama_1432	0.50	+3.1
1,744,105	+		Sama_1432	0.52	+4.9
1,744,115	+		Sama_1432	0.54	-1.9
1,744,116	-		Sama_1432	0.54	+0.7
1,744,224	+		Sama_1432	0.75	-1.2
1,744,224	+		Sama_1432	0.75	-2.7
1,744,224	+		Sama_1432	0.75	+1.0
1,744,224	+		Sama_1432	0.75	-2.9
1,744,224	+		Sama_1432	0.75	-0.4
1,744,225	-		Sama_1432	0.76	-0.1
1,744,225	-		Sama_1432	0.76	+0.1
1,744,226	+		Sama_1432	0.76	+0.9
1,744,335	+				+0.7
1,744,335	+				+0.1
1,744,335	+				-0.9
1,744,336	-				+0.1
1,744,336	-				-0.4
1,744,336	-				-1.3
1,744,336	-				+1.7
1,744,345	+				-0.8
1,744,345	+				+1.6
1,744,345	+				-0.2
1,744,346	-				-1.4
1,744,349	+				-0.7
1,744,349	+				-2.0
1,744,349	+				+0.2
1,744,349	+				+4.0
1,744,350	-				+0.1
1,744,350	-				-1.2
1,744,440	+				+1.1
1,744,441	-				-1.9
1,744,441	-				+0.6
1,744,568	+				-0.7
1,744,568	+				+1.3
1,744,604	-				-0.4
1,744,629	+				-0.3
1,744,644	+				+1.1
1,744,645	-				-1.8
1,744,653	-				-2.6