Strain Fitness in Shewanella amazonensis SB2B around Sama_1176

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,436,434	+		Sama_1175	0.54	+1.2
1,436,435	-		Sama_1175	0.54	-0.9
1,436,454	+		Sama_1175	0.55	+0.6
1,436,454	+		Sama_1175	0.55	-1.7
1,436,455	-		Sama_1175	0.55	-0.4
1,436,472	+		Sama_1175	0.56	-1.7
1,436,497	+		Sama_1175	0.57	+0.8
1,436,497	+		Sama_1175	0.57	-0.4
1,436,497	+		Sama_1175	0.57	-1.4
1,436,497	+		Sama_1175	0.57	+1.1
1,436,497	+		Sama_1175	0.57	+0.1
1,436,497	+		Sama_1175	0.57	-0.1
1,436,497	+		Sama_1175	0.57	+0.4
1,436,498	-		Sama_1175	0.57	+3.0
1,436,498	-		Sama_1175	0.57	+0.4
1,436,498	-		Sama_1175	0.57	-1.2
1,436,498	-		Sama_1175	0.57	-0.7
1,436,498	-		Sama_1175	0.57	-1.9
1,436,674	+		Sama_1175	0.66	-1.2
1,436,861	-		Sama_1175	0.76	-0.9
1,436,865	+		Sama_1175	0.76	-1.9
1,436,865	+		Sama_1175	0.76	-2.2
1,436,900	+		Sama_1175	0.78	+1.0
1,436,901	-		Sama_1175	0.78	+1.6
1,436,901	-		Sama_1175	0.78	+1.6
1,436,901	-		Sama_1175	0.78	+1.0
1,436,901	-		Sama_1175	0.78	+0.1
1,437,040	+		Sama_1175	0.85	-0.5
1,437,040	+		Sama_1175	0.85	-0.5
1,437,040	+		Sama_1175	0.85	-1.5
1,437,041	-		Sama_1175	0.85	+0.1
1,437,041	-		Sama_1175	0.85	-0.1
1,437,041	-		Sama_1175	0.85	-1.9
1,437,041	-		Sama_1175	0.85	-0.9
1,437,041	-		Sama_1175	0.85	-1.2
1,437,041	-		Sama_1175	0.85	+2.0
1,437,117	-		Sama_1175	0.89	-2.0
1,437,138	-		Sama_1175	0.90	-0.6
1,437,142	+		Sama_1175	0.90	+0.3
1,437,142	+		Sama_1175	0.90	-0.8
1,437,143	-				-0.9
1,437,224	+				-1.2
1,437,224	+				+0.5
1,437,224	+				+0.9
1,437,224	+				-1.2
1,437,224	+				-1.9
1,437,225	-				-0.5
1,437,225	-				+2.0
1,437,225	-				-0.5
1,437,225	-				-0.9
1,437,239	+				+0.2
1,437,239	+				+2.5
1,437,239	+				+0.4
1,437,270	+				+2.1
1,437,270	+				+3.1
1,437,279	-				+0.1
1,437,296	+				-1.5
1,437,296	+				+1.9
1,437,297	-				-1.7
1,437,307	-				-0.7
1,437,307	-				+0.1
1,437,307	-				-2.2
1,437,374	+				+2.1
1,437,374	+				+1.1
1,437,375	-				+0.8
1,437,375	-				-0.9
1,437,390	+				-0.3
1,437,390	+				+2.9
1,437,390	+				-0.7
1,437,391	-				-2.3
1,437,398	-				+0.8
1,437,398	-				+1.1
1,437,409	+				+1.1
1,437,435	+				+0.2
1,437,503	+		Sama_1176	0.26	+1.1
1,437,504	-		Sama_1176	0.26	-1.2
1,437,538	+		Sama_1176	0.36	-0.6
1,437,583	+		Sama_1176	0.48	-1.7
1,437,595	+		Sama_1176	0.52	+0.8
1,437,595	+		Sama_1176	0.52	-2.6
1,437,596	-		Sama_1176	0.52	-0.0
1,437,613	+		Sama_1176	0.57	+0.6
1,437,635	+		Sama_1176	0.63	-0.9
1,437,646	+		Sama_1176	0.66	-2.0
1,437,646	+		Sama_1176	0.66	-0.2
1,437,673	+		Sama_1176	0.74	+0.9
1,437,673	+		Sama_1176	0.74	+0.9
1,437,673	+		Sama_1176	0.74	+1.5
1,437,674	-		Sama_1176	0.74	-2.7
1,437,719	+		Sama_1176	0.87	+4.3
1,437,719	+		Sama_1176	0.87	+0.1
1,437,719	+		Sama_1176	0.87	-1.7
1,437,719	+		Sama_1176	0.87	-0.9
1,437,719	+		Sama_1176	0.87	+0.4
1,437,719	+		Sama_1176	0.87	+1.5
1,437,720	-		Sama_1176	0.87	-1.2
1,437,720	-		Sama_1176	0.87	-1.2
1,437,720	-		Sama_1176	0.87	-0.5
1,437,739	+				-2.9
1,437,739	+				-0.9
1,437,758	-				+1.9
1,437,764	+				+1.1
1,437,764	+				-0.9
1,437,764	+				-0.9
1,437,841	+				-2.0
1,437,841	+				-0.5
1,437,884	+				+0.1
1,437,886	+				-0.9
1,437,886	+				+0.3
1,437,887	-				-0.2
1,437,908	+				+0.2
1,437,909	-				+0.6
1,437,929	+				+0.4
1,437,944	+				+1.6
1,437,944	+				+1.7
1,437,944	+				-2.2
1,437,944	+				-1.2
1,437,944	+				-1.5
1,437,945	-				+2.7
1,437,945	-				+0.5
1,437,971	+				+0.3
1,438,014	+				-1.2
1,438,014	+				-2.2
1,438,014	+				-0.9
1,438,014	+				-0.9
1,438,014	+				+1.4
1,438,015	-				+0.1
1,438,015	-				-0.5
1,438,015	-				-2.5
1,438,015	-				-0.2
1,438,020	-				-0.2
1,438,038	+				+0.3
1,438,043	+				+1.1
1,438,044	-				-0.7
1,438,114	-		Sama_1177	0.12	-2.0
1,438,114	-		Sama_1177	0.12	-0.9
1,438,114	-		Sama_1177	0.12	+2.4
1,438,114	-		Sama_1177	0.12	+1.7
1,438,232	+		Sama_1177	0.20	+1.5
1,438,232	+		Sama_1177	0.20	-2.0
1,438,266	-		Sama_1177	0.22	+0.9
1,438,365	+		Sama_1177	0.29	-1.7
1,438,365	+		Sama_1177	0.29	+5.1
1,438,365	+		Sama_1177	0.29	-0.5
1,438,365	+		Sama_1177	0.29	-0.2
1,438,365	+		Sama_1177	0.29	+6.3
1,438,365	+		Sama_1177	0.29	-0.3
1,438,365	+		Sama_1177	0.29	+1.0
1,438,365	+		Sama_1177	0.29	+0.2
1,438,366	-		Sama_1177	0.29	+0.1
1,438,366	-		Sama_1177	0.29	-0.3
1,438,366	-		Sama_1177	0.29	-0.5
1,438,366	-		Sama_1177	0.29	-1.9
1,438,366	-		Sama_1177	0.29	-0.2
1,438,368	+		Sama_1177	0.29	-1.5
1,438,368	+		Sama_1177	0.29	+0.4
1,438,369	-		Sama_1177	0.29	-0.5
1,438,369	-		Sama_1177	0.29	+0.8
1,438,369	-		Sama_1177	0.29	-1.2
1,438,369	-		Sama_1177	0.29	-0.7
1,438,369	-		Sama_1177	0.29	-2.9
1,438,369	-		Sama_1177	0.29	+0.9
1,438,369	-		Sama_1177	0.29	-0.6
1,438,369	-		Sama_1177	0.29	-0.9
1,438,369	-		Sama_1177	0.29	-1.7
1,438,384	+		Sama_1177	0.30	-0.1
1,438,385	-		Sama_1177	0.30	+0.9
1,438,385	-		Sama_1177	0.30	-2.2
1,438,385	-		Sama_1177	0.30	-0.7
1,438,421	+		Sama_1177	0.32	+1.5
1,438,422	-		Sama_1177	0.32	+2.0
1,438,428	+		Sama_1177	0.33	+0.0
1,438,429	-		Sama_1177	0.33	-0.5
1,438,429	-		Sama_1177	0.33	-1.9
1,438,429	-		Sama_1177	0.33	-0.9
1,438,443	+		Sama_1177	0.34	-0.9
1,438,443	+		Sama_1177	0.34	-1.3
1,438,443	+		Sama_1177	0.34	-0.5
1,438,443	+		Sama_1177	0.34	+0.7
1,438,443	+		Sama_1177	0.34	-1.9
1,438,443	+		Sama_1177	0.34	+0.2
1,438,443	+		Sama_1177	0.34	+0.1
1,438,443	+		Sama_1177	0.34	+0.6
1,438,443	+		Sama_1177	0.34	-0.5
1,438,444	-		Sama_1177	0.34	-2.1
1,438,444	-		Sama_1177	0.34	+1.3
1,438,444	-		Sama_1177	0.34	-1.7
1,438,444	-		Sama_1177	0.34	+1.5
1,438,444	-		Sama_1177	0.34	+0.5
1,438,515	+		Sama_1177	0.38	+1.1
1,438,515	+		Sama_1177	0.38	+0.1
1,438,515	+		Sama_1177	0.38	-1.2
1,438,515	+		Sama_1177	0.38	+1.5
1,438,516	-		Sama_1177	0.39	-0.0
1,438,516	-		Sama_1177	0.39	-0.1
1,438,516	-		Sama_1177	0.39	-0.6
1,438,516	-		Sama_1177	0.39	+0.6
1,438,516	-		Sama_1177	0.39	-0.5
1,438,516	-		Sama_1177	0.39	+0.8
1,438,516	-		Sama_1177	0.39	-1.5
1,438,516	-		Sama_1177	0.39	+0.3
1,438,516	-		Sama_1177	0.39	-0.4
1,438,532	+		Sama_1177	0.40	+0.1
1,438,532	+		Sama_1177	0.40	-0.5
1,438,545	+		Sama_1177	0.40	+2.6
1,438,545	+		Sama_1177	0.40	+0.1
1,438,546	-		Sama_1177	0.40	-2.9
1,438,546	-		Sama_1177	0.40	+0.3
1,438,546	-		Sama_1177	0.40	-0.9
1,438,546	-		Sama_1177	0.40	+2.0
1,438,546	-		Sama_1177	0.40	+1.7
1,438,597	+		Sama_1177	0.44	-0.9
1,438,597	+		Sama_1177	0.44	+1.1
1,438,666	+		Sama_1177	0.48	-1.9
1,438,667	-		Sama_1177	0.48	-0.6
1,438,766	-		Sama_1177	0.55	-1.2