Strain Fitness in Shewanella amazonensis SB2B around Sama_1081

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,307,334	-		Sama_1079	0.51	-1.2
1,307,334	-		Sama_1079	0.51	+1.9
1,307,334	-		Sama_1079	0.51	+2.1
1,307,414	+		Sama_1079	0.81	-1.3
1,307,414	+		Sama_1079	0.81	-1.5
1,307,414	+		Sama_1079	0.81	+1.2
1,307,415	-		Sama_1079	0.81	-0.6
1,307,531	-				+0.0
1,307,531	-				+0.6
1,307,533	+				-0.4
1,307,534	-				+0.1
1,307,534	-				+1.4
1,307,656	+				+0.3
1,307,813	-		Sama_1080	0.27	-1.2
1,307,813	-		Sama_1080	0.27	-0.3
1,307,842	+		Sama_1080	0.33	-0.4
1,307,842	+		Sama_1080	0.33	-1.2
1,307,843	-		Sama_1080	0.33	+2.7
1,307,843	-		Sama_1080	0.33	-0.8
1,307,852	-		Sama_1080	0.35	+1.0
1,307,997	-		Sama_1080	0.64	+0.9
1,308,018	+		Sama_1080	0.69	+1.0
1,308,018	+		Sama_1080	0.69	-0.7
1,308,018	+		Sama_1080	0.69	-1.0
1,308,018	+		Sama_1080	0.69	-0.8
1,308,019	-		Sama_1080	0.69	+1.2
1,308,019	-		Sama_1080	0.69	-1.0
1,308,019	-		Sama_1080	0.69	-1.5
1,308,048	+		Sama_1080	0.75	+4.5
1,308,048	+		Sama_1080	0.75	-3.2
1,308,049	-		Sama_1080	0.75	+1.2
1,308,058	+		Sama_1080	0.77	-0.3
1,308,079	+		Sama_1080	0.81	+1.2
1,308,080	-		Sama_1080	0.81	-2.0
1,308,092	+		Sama_1080	0.84	+1.2
1,308,092	+		Sama_1080	0.84	+0.9
1,308,093	-		Sama_1080	0.84	-1.8
1,308,093	-		Sama_1080	0.84	+2.2
1,308,093	-		Sama_1080	0.84	-0.6
1,308,159	+				+0.2
1,308,159	+				-1.6
1,308,159	+				-0.1
1,308,160	-				-0.2
1,308,172	+				-0.4
1,308,209	+				-1.4
1,308,210	-				-1.4
1,308,210	-				+0.7
1,308,210	-				-1.2
1,308,251	+				-0.7
1,308,266	+				+0.2
1,308,267	-				-1.2
1,308,286	-				-2.0
1,308,286	-				-1.8
1,308,286	-				+0.6
1,308,286	-				-1.2
1,308,287	+				+0.8
1,308,287	+				+1.8
1,308,288	-				-0.8
1,308,288	-				-0.3
1,308,288	-				+0.2
1,308,304	+				-0.1
1,308,305	-				+0.7
1,308,386	+				+2.4
1,308,395	+				-1.0
1,308,395	+				-1.8
1,308,396	-				+0.8
1,308,467	+				+2.4
1,308,467	+				+0.2
1,308,468	-				-1.6
1,308,506	-		Sama_1081	0.13	+1.2
1,308,542	+		Sama_1081	0.15	-0.8
1,308,542	+		Sama_1081	0.15	-1.2
1,308,542	+		Sama_1081	0.15	-0.4
1,308,543	-		Sama_1081	0.15	+1.5
1,308,543	-		Sama_1081	0.15	+0.2
1,308,594	+		Sama_1081	0.19	-0.6
1,308,594	+		Sama_1081	0.19	+0.4
1,308,594	+		Sama_1081	0.19	-1.6
1,308,594	+		Sama_1081	0.19	-1.4
1,308,594	+		Sama_1081	0.19	-2.2
1,308,632	+		Sama_1081	0.22	+0.5
1,308,632	+		Sama_1081	0.22	+0.2
1,308,664	+		Sama_1081	0.24	-0.1
1,308,665	-		Sama_1081	0.24	+3.5
1,308,682	-		Sama_1081	0.25	+0.2
1,308,736	+		Sama_1081	0.29	+1.9
1,308,736	+		Sama_1081	0.29	+1.5
1,308,736	+		Sama_1081	0.29	+1.0
1,308,737	-		Sama_1081	0.30	-2.0
1,308,737	-		Sama_1081	0.30	+1.2
1,308,737	-		Sama_1081	0.30	-2.5
1,308,737	-		Sama_1081	0.30	-0.3
1,308,737	-		Sama_1081	0.30	+2.8
1,308,737	-		Sama_1081	0.30	-0.4
1,308,738	+		Sama_1081	0.30	-1.2
1,308,739	-		Sama_1081	0.30	-0.8
1,308,761	+		Sama_1081	0.31	+2.0
1,308,762	-		Sama_1081	0.31	+0.9
1,308,762	-		Sama_1081	0.31	-3.3
1,308,762	-		Sama_1081	0.31	-0.7
1,308,762	-		Sama_1081	0.31	+1.8
1,308,798	+		Sama_1081	0.34	-0.5
1,308,798	+		Sama_1081	0.34	+4.6
1,308,799	-		Sama_1081	0.34	-3.2
1,308,799	-		Sama_1081	0.34	+0.8
1,308,799	-		Sama_1081	0.34	-1.5
1,308,799	-		Sama_1081	0.34	-0.5
1,308,812	+		Sama_1081	0.35	+2.2
1,308,812	+		Sama_1081	0.35	+1.2
1,308,812	+		Sama_1081	0.35	-1.3
1,308,812	+		Sama_1081	0.35	+0.2
1,308,812	+		Sama_1081	0.35	+0.6
1,308,813	-		Sama_1081	0.35	+2.6
1,308,813	-		Sama_1081	0.35	+4.0
1,308,813	-		Sama_1081	0.35	+0.7
1,308,813	-		Sama_1081	0.35	+0.2
1,308,813	-		Sama_1081	0.35	-0.6
1,308,813	-		Sama_1081	0.35	+0.2
1,308,813	-		Sama_1081	0.35	-0.3
1,308,813	-		Sama_1081	0.35	-1.4
1,308,813	-		Sama_1081	0.35	-1.0
1,308,855	+		Sama_1081	0.38	-1.2
1,308,855	+		Sama_1081	0.38	-1.8
1,308,856	-		Sama_1081	0.38	-0.5
1,308,856	-		Sama_1081	0.38	-0.6
1,308,920	+		Sama_1081	0.43	+1.2
1,308,920	+		Sama_1081	0.43	+0.3
1,308,920	+		Sama_1081	0.43	-0.8
1,308,921	-		Sama_1081	0.43	+2.0
1,308,921	-		Sama_1081	0.43	+0.8
1,308,931	-		Sama_1081	0.44	-0.4
1,309,027	-		Sama_1081	0.51	+0.2
1,309,027	-		Sama_1081	0.51	-1.6
1,309,120	+		Sama_1081	0.58	-0.0
1,309,120	+		Sama_1081	0.58	+4.1
1,309,120	+		Sama_1081	0.58	+3.6
1,309,120	+		Sama_1081	0.58	+0.5
1,309,120	+		Sama_1081	0.58	-1.3
1,309,120	+		Sama_1081	0.58	+0.2
1,309,120	+		Sama_1081	0.58	+0.6
1,309,121	-		Sama_1081	0.58	+0.3
1,309,150	-		Sama_1081	0.60	-2.2
1,309,182	+		Sama_1081	0.62	+1.4
1,309,218	+		Sama_1081	0.65	-1.2
1,309,221	+		Sama_1081	0.65	-1.8
1,309,221	+		Sama_1081	0.65	-0.4
1,309,222	-		Sama_1081	0.65	-0.4
1,309,304	+		Sama_1081	0.71	-1.2
1,309,304	+		Sama_1081	0.71	-1.6
1,309,304	+		Sama_1081	0.71	-1.6
1,309,304	+		Sama_1081	0.71	-0.2
1,309,312	-		Sama_1081	0.72	-1.9
1,309,312	-		Sama_1081	0.72	-1.6
1,309,316	+		Sama_1081	0.72	+2.0
1,309,316	+		Sama_1081	0.72	-2.0
1,309,317	-		Sama_1081	0.72	+4.3
1,309,317	-		Sama_1081	0.72	+1.6
1,309,433	+		Sama_1081	0.81	-0.8
1,309,433	+		Sama_1081	0.81	+0.8
1,309,433	+		Sama_1081	0.81	+4.1
1,309,433	+		Sama_1081	0.81	-1.2
1,309,433	+		Sama_1081	0.81	-1.2
1,309,433	+		Sama_1081	0.81	+1.5
1,309,434	-		Sama_1081	0.81	+3.9
1,309,434	-		Sama_1081	0.81	-0.4
1,309,468	-		Sama_1081	0.83	-1.4
1,309,469	+		Sama_1081	0.83	-1.2
1,309,469	+		Sama_1081	0.83	+1.6
1,309,469	+		Sama_1081	0.83	+2.5
1,309,469	+		Sama_1081	0.83	+1.9
1,309,470	-		Sama_1081	0.83	-1.7
1,309,470	-		Sama_1081	0.83	+0.6
1,309,542	+		Sama_1081	0.88	+0.7
1,309,542	+		Sama_1081	0.88	+0.2
1,309,543	-		Sama_1081	0.89	+0.6
1,309,543	-		Sama_1081	0.89	-0.8
1,309,574	+				+0.0
1,309,685	+				-0.3
1,309,685	+				-0.4
1,309,685	+				-0.8
1,309,685	+				-0.2
1,309,686	-				-1.2
1,309,686	-				+1.8
1,309,686	-				-1.3
1,309,778	+		Sama_1082	0.16	+1.3
1,309,778	+		Sama_1082	0.16	-1.5
1,309,872	-		Sama_1082	0.34	-2.3
1,309,900	+		Sama_1082	0.39	-0.8
1,309,900	+		Sama_1082	0.39	-1.4
1,309,900	+		Sama_1082	0.39	+1.1
1,309,901	-		Sama_1082	0.39	-3.2
1,309,994	-		Sama_1082	0.57	+0.5
1,310,013	+		Sama_1082	0.61	-0.8
1,310,047	+		Sama_1082	0.67	+1.6
1,310,048	-		Sama_1082	0.67	+3.5
1,310,048	-		Sama_1082	0.67	+1.3
1,310,070	+		Sama_1082	0.71	+1.5
1,310,079	+		Sama_1082	0.73	-1.2
1,310,079	+		Sama_1082	0.73	-0.5
1,310,087	+		Sama_1082	0.75	+0.6
1,310,105	+		Sama_1082	0.78	-0.4
1,310,118	+		Sama_1082	0.81	-1.6
1,310,118	+		Sama_1082	0.81	-1.0
1,310,118	+		Sama_1082	0.81	-3.9
1,310,118	+		Sama_1082	0.81	+0.8
1,310,119	-		Sama_1082	0.81	-1.2
1,310,119	-		Sama_1082	0.81	+2.4
1,310,119	-		Sama_1082	0.81	+0.8
1,310,159	-		Sama_1082	0.88	-0.4
1,310,173	+				-2.0
1,310,173	+				-0.3
1,310,174	-				-0.2
1,310,289	+		Sama_1083	0.11	-2.3
1,310,290	-		Sama_1083	0.11	+1.8
1,310,290	-		Sama_1083	0.11	-0.5
1,310,293	+		Sama_1083	0.12	+2.2
1,310,293	+		Sama_1083	0.12	+0.6
1,310,294	-		Sama_1083	0.12	-0.7
1,310,294	-		Sama_1083	0.12	+0.2
1,310,294	-		Sama_1083	0.12	+0.4
1,310,303	-		Sama_1083	0.13	+5.8
1,310,303	-		Sama_1083	0.13	-2.5
1,310,366	+		Sama_1083	0.20	+1.0
1,310,405	+		Sama_1083	0.25	-0.8
1,310,423	+		Sama_1083	0.27	-0.2
1,310,424	-		Sama_1083	0.27	+0.5
1,310,424	-		Sama_1083	0.27	-1.2
1,310,439	-		Sama_1083	0.28	-1.7
1,310,439	-		Sama_1083	0.28	-0.8
1,310,458	-		Sama_1083	0.31	-0.8
1,310,579	+		Sama_1083	0.44	-1.0
1,310,587	+		Sama_1083	0.45	+1.7
1,310,614	-		Sama_1083	0.48	-0.8
1,310,614	-		Sama_1083	0.48	-2.4
1,310,642	+		Sama_1083	0.52	-2.0
1,310,668	+		Sama_1083	0.55	-1.8
1,310,668	+		Sama_1083	0.55	-0.7
1,310,668	+		Sama_1083	0.55	-1.0
1,310,669	-		Sama_1083	0.55	-2.6