Strain Fitness in Shewanella amazonensis SB2B around Sama_0948

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
1,147,217	+		Sama_0947	0.34	+1.0
1,147,217	+		Sama_0947	0.34	-0.4
1,147,217	+		Sama_0947	0.34	+1.2
1,147,217	+		Sama_0947	0.34	+0.5
1,147,217	+		Sama_0947	0.34	-1.1
1,147,217	+		Sama_0947	0.34	-0.8
1,147,217	+		Sama_0947	0.34	-0.6
1,147,217	+		Sama_0947	0.34	-2.2
1,147,218	-		Sama_0947	0.34	-1.2
1,147,218	-		Sama_0947	0.34	-0.3
1,147,218	-		Sama_0947	0.34	+2.0
1,147,218	-		Sama_0947	0.34	+0.7
1,147,223	-		Sama_0947	0.35	-1.1
1,147,285	-		Sama_0947	0.40	-0.8
1,147,304	+		Sama_0947	0.42	-0.4
1,147,416	-		Sama_0947	0.52	-0.4
1,147,416	-		Sama_0947	0.52	+0.4
1,147,444	+		Sama_0947	0.54	+0.6
1,147,444	+		Sama_0947	0.54	-0.4
1,147,444	+		Sama_0947	0.54	-1.6
1,147,444	+		Sama_0947	0.54	-1.6
1,147,444	+		Sama_0947	0.54	+0.7
1,147,444	+		Sama_0947	0.54	-2.5
1,147,444	+		Sama_0947	0.54	+0.6
1,147,444	+		Sama_0947	0.54	+0.2
1,147,445	-		Sama_0947	0.54	+0.2
1,147,445	-		Sama_0947	0.54	-0.6
1,147,445	-		Sama_0947	0.54	-0.5
1,147,445	-		Sama_0947	0.54	-0.1
1,147,445	-		Sama_0947	0.54	-0.6
1,147,445	-		Sama_0947	0.54	+0.7
1,147,445	-		Sama_0947	0.54	-0.6
1,147,459	+		Sama_0947	0.55	-2.3
1,147,460	-		Sama_0947	0.55	+0.2
1,147,473	+		Sama_0947	0.57	-1.1
1,147,473	+		Sama_0947	0.57	+1.2
1,147,473	+		Sama_0947	0.57	-1.4
1,147,473	+		Sama_0947	0.57	+1.9
1,147,496	+		Sama_0947	0.59	+1.9
1,147,497	-		Sama_0947	0.59	+2.8
1,147,533	+		Sama_0947	0.62	+1.0
1,147,534	-		Sama_0947	0.62	+2.8
1,147,534	-		Sama_0947	0.62	+1.6
1,147,670	+		Sama_0947	0.74	-1.8
1,147,670	+		Sama_0947	0.74	-2.1
1,147,670	+		Sama_0947	0.74	-1.8
1,147,715	-		Sama_0947	0.78	+0.3
1,147,715	-		Sama_0947	0.78	+1.5
1,147,788	+		Sama_0947	0.84	-3.6
1,147,788	+		Sama_0947	0.84	+5.5
1,147,789	-		Sama_0947	0.84	+0.1
1,147,789	-		Sama_0947	0.84	+0.8
1,147,789	-		Sama_0947	0.84	-0.4
1,147,793	-		Sama_0947	0.85	+2.4
1,147,793	-		Sama_0947	0.85	-0.8
1,147,822	+		Sama_0947	0.87	-0.8
1,147,830	+		Sama_0947	0.88	-1.9
1,147,851	+		Sama_0947	0.90	-1.1
1,147,851	+		Sama_0947	0.90	+2.4
1,147,851	+		Sama_0947	0.90	+2.1
1,147,862	+				-0.1
1,147,862	+				-0.9
1,147,862	+				+2.0
1,147,862	+				+1.2
1,147,862	+				-0.9
1,147,862	+				-0.1
1,147,863	-				-1.2
1,147,866	+				-0.7
1,147,866	+				+1.6
1,147,866	+				+1.6
1,147,866	+				-1.3
1,147,866	+				-1.1
1,147,867	-				+1.4
1,147,867	-				-2.4
1,147,867	-				-2.4
1,147,867	-				+1.5
1,147,867	-				-1.1
1,147,910	+				+1.0
1,147,927	+				+0.1
1,147,927	+				+0.0
1,147,936	+				-0.6
1,147,936	+				-0.7
1,147,937	-				+0.8
1,147,937	-				-0.1
1,147,949	+				+0.2
1,147,950	-				+1.6
1,147,950	-				-0.4
1,147,977	+				-1.7
1,147,978	-				+0.8
1,148,016	+				+1.9
1,148,016	+				+2.5
1,148,016	+				+2.5
1,148,017	-				-1.1
1,148,017	-				-1.6
1,148,017	-				+2.8
1,148,017	-				+0.0
1,148,022	+				+1.1
1,148,022	+				-0.9
1,148,022	+				+0.7
1,148,023	-				+4.7
1,148,066	+				+0.4
1,148,066	+				-1.6
1,148,066	+				-2.5
1,148,124	+				-1.2
1,148,124	+				-0.2
1,148,125	-				-0.0
1,148,125	-				+2.2
1,148,126	+				+0.2
1,148,126	+				-1.1
1,148,159	+				-1.4
1,148,174	-				-2.5
1,148,181	+				+4.5
1,148,182	-				-1.1
1,148,199	+				+1.8
1,148,199	+				+0.2
1,148,199	+				+0.9
1,148,199	+				-1.4
1,148,199	+				-2.7
1,148,199	+				+1.2
1,148,200	-				-1.9
1,148,200	-				+1.5
1,148,200	-				+1.1
1,148,249	+				-2.4
1,148,273	+				+1.0
1,148,273	+				+0.9
1,148,273	+				+0.7
1,148,274	-				+0.0
1,148,274	-				+2.1
1,148,274	-				-0.0
1,148,274	-				+2.5
1,148,274	-				-0.1
1,148,338	-		Sama_0948	0.10	-3.1
1,148,338	-		Sama_0948	0.10	+2.8
1,148,338	-		Sama_0948	0.10	-1.0
1,148,386	+		Sama_0948	0.14	+0.1
1,148,386	+		Sama_0948	0.14	-0.5
1,148,386	+		Sama_0948	0.14	+0.5
1,148,386	+		Sama_0948	0.14	-1.8
1,148,386	+		Sama_0948	0.14	+0.0
1,148,386	+		Sama_0948	0.14	+0.6
1,148,387	-		Sama_0948	0.14	+0.2
1,148,390	+		Sama_0948	0.14	-1.4
1,148,390	+		Sama_0948	0.14	+3.3
1,148,390	+		Sama_0948	0.14	-1.4
1,148,390	+		Sama_0948	0.14	+0.2
1,148,390	+		Sama_0948	0.14	+0.1
1,148,390	+		Sama_0948	0.14	-1.8
1,148,391	-		Sama_0948	0.14	-0.3
1,148,391	-		Sama_0948	0.14	-1.8
1,148,395	+		Sama_0948	0.15	+2.7
1,148,395	+		Sama_0948	0.15	-0.4
1,148,396	-		Sama_0948	0.15	-0.4
1,148,396	-		Sama_0948	0.15	+0.0
1,148,396	-		Sama_0948	0.15	-2.6
1,148,396	-		Sama_0948	0.15	+0.3
1,148,402	+		Sama_0948	0.15	-2.4
1,148,402	+		Sama_0948	0.15	+0.8
1,148,415	+		Sama_0948	0.16	+0.8
1,148,415	+		Sama_0948	0.16	+0.0
1,148,415	+		Sama_0948	0.16	-0.1
1,148,415	+		Sama_0948	0.16	-0.4
1,148,415	+		Sama_0948	0.16	-0.3
1,148,415	+		Sama_0948	0.16	+1.0
1,148,415	+		Sama_0948	0.16	+2.1
1,148,415	+		Sama_0948	0.16	-0.3
1,148,416	-		Sama_0948	0.16	-0.6
1,148,430	-		Sama_0948	0.17	+1.4
1,148,430	-		Sama_0948	0.17	-0.8
1,148,448	+		Sama_0948	0.19	-1.1
1,148,448	+		Sama_0948	0.19	+2.7
1,148,499	+		Sama_0948	0.23	-0.8
1,148,513	-		Sama_0948	0.24	-2.6
1,148,513	-		Sama_0948	0.24	-0.8
1,148,550	+		Sama_0948	0.26	+1.8
1,148,596	+		Sama_0948	0.30	-2.6
1,148,596	+		Sama_0948	0.30	-0.0
1,148,596	+		Sama_0948	0.30	+1.2
1,148,597	-		Sama_0948	0.30	-0.4
1,148,597	-		Sama_0948	0.30	-1.4
1,148,597	-		Sama_0948	0.30	+0.1
1,148,607	+		Sama_0948	0.31	-2.5
1,148,656	-		Sama_0948	0.34	+0.2
1,148,675	+		Sama_0948	0.36	-2.1
1,148,676	-		Sama_0948	0.36	-0.2
1,148,676	-		Sama_0948	0.36	-0.8
1,148,676	-		Sama_0948	0.36	-1.4
1,148,809	+		Sama_0948	0.46	-0.6
1,148,809	+		Sama_0948	0.46	-1.8
1,148,809	+		Sama_0948	0.46	+0.0
1,148,809	+		Sama_0948	0.46	+1.9
1,148,809	+		Sama_0948	0.46	-1.1
1,148,809	+		Sama_0948	0.46	+2.4
1,148,809	+		Sama_0948	0.46	+0.4
1,148,809	+		Sama_0948	0.46	-0.3
1,148,809	+		Sama_0948	0.46	-0.5
1,148,809	+		Sama_0948	0.46	+1.4
1,148,809	+		Sama_0948	0.46	+0.9
1,148,809	+		Sama_0948	0.46	+2.1
1,148,809	+		Sama_0948	0.46	+0.1
1,148,809	+		Sama_0948	0.46	-1.4
1,148,810	-		Sama_0948	0.46	+0.2
1,148,810	-		Sama_0948	0.46	-0.6
1,148,810	-		Sama_0948	0.46	+1.5
1,148,810	-		Sama_0948	0.46	+2.2
1,148,810	-		Sama_0948	0.46	-2.3
1,148,810	-		Sama_0948	0.46	-0.9
1,148,810	-		Sama_0948	0.46	-1.8
1,148,810	-		Sama_0948	0.46	-0.2
1,148,810	-		Sama_0948	0.46	-2.4
1,148,810	-		Sama_0948	0.46	-0.5
1,148,810	-		Sama_0948	0.46	+1.2
1,148,811	+		Sama_0948	0.46	+0.0
1,148,811	+		Sama_0948	0.46	-3.2
1,148,811	+		Sama_0948	0.46	+1.5
1,148,811	+		Sama_0948	0.46	+0.7
1,148,811	+		Sama_0948	0.46	-0.8
1,148,811	+		Sama_0948	0.46	+2.8
1,148,811	+		Sama_0948	0.46	-0.9
1,148,811	+		Sama_0948	0.46	-1.6
1,148,811	+		Sama_0948	0.46	+2.6
1,148,811	+		Sama_0948	0.46	-1.1
1,148,811	+		Sama_0948	0.46	-2.9
1,148,811	+		Sama_0948	0.46	+3.0
1,148,811	+		Sama_0948	0.46	+1.1
1,148,811	+		Sama_0948	0.46	-2.2
1,148,811	+		Sama_0948	0.46	+0.1
1,148,811	+		Sama_0948	0.46	+0.9
1,148,811	+		Sama_0948	0.46	+0.0
1,148,812	-		Sama_0948	0.46	-1.2
1,148,812	-		Sama_0948	0.46	-1.1
1,148,812	-		Sama_0948	0.46	-2.7
1,148,812	-		Sama_0948	0.46	-0.8
1,148,812	-		Sama_0948	0.46	+0.1
1,148,812	-		Sama_0948	0.46	+1.2
1,148,812	-		Sama_0948	0.46	+1.8
1,148,812	-		Sama_0948	0.46	+0.9
1,148,812	-		Sama_0948	0.46	-1.1
1,148,812	-		Sama_0948	0.46	-0.2
1,148,812	-		Sama_0948	0.46	+3.5
1,148,812	-		Sama_0948	0.46	-1.4
1,148,812	-		Sama_0948	0.46	-2.1
1,148,812	-		Sama_0948	0.46	+0.3
1,148,812	-		Sama_0948	0.46	+1.2
1,148,812	-		Sama_0948	0.46	+0.1
1,148,815	+		Sama_0948	0.46	-0.9
1,148,815	+		Sama_0948	0.46	-1.1
1,148,815	+		Sama_0948	0.46	+1.2
1,148,815	+		Sama_0948	0.46	-0.8
1,148,815	+		Sama_0948	0.46	+0.6
1,148,815	+		Sama_0948	0.46	-2.9
1,148,815	+		Sama_0948	0.46	-0.8
1,148,815	+		Sama_0948	0.46	-0.4
1,148,815	+		Sama_0948	0.46	+1.8
1,148,815	+		Sama_0948	0.46	-0.4
1,148,815	+		Sama_0948	0.46	-2.1
1,148,816	-		Sama_0948	0.46	+0.7
1,148,816	-		Sama_0948	0.46	-2.1
1,148,816	-		Sama_0948	0.46	+1.8
1,148,816	-		Sama_0948	0.46	+0.4
1,148,816	-		Sama_0948	0.46	+0.2
1,148,816	-		Sama_0948	0.46	-0.3
1,148,816	-		Sama_0948	0.46	+2.6
1,148,816	-		Sama_0948	0.46	-0.4
1,148,816	-		Sama_0948	0.46	-2.0
1,148,816	-		Sama_0948	0.46	+0.8
1,148,816	-		Sama_0948	0.46	+0.9
1,148,816	-		Sama_0948	0.46	+0.9
1,148,816	-		Sama_0948	0.46	-1.0
1,148,816	-		Sama_0948	0.46	+0.2
1,148,868	-		Sama_0948	0.50	-2.0
1,148,954	+		Sama_0948	0.57	-0.6
1,148,954	+		Sama_0948	0.57	+0.5
1,148,968	+		Sama_0948	0.58	-1.1
1,148,968	+		Sama_0948	0.58	-1.4
1,148,968	+		Sama_0948	0.58	-1.1
1,148,968	+		Sama_0948	0.58	+2.8
1,148,968	+		Sama_0948	0.58	-3.5
1,148,968	+		Sama_0948	0.58	+2.8
1,148,968	+		Sama_0948	0.58	-1.3
1,148,969	-		Sama_0948	0.58	+0.6
1,148,969	-		Sama_0948	0.58	-2.0
1,148,969	-		Sama_0948	0.58	+2.0
1,148,969	-		Sama_0948	0.58	-0.0
1,148,969	-		Sama_0948	0.58	+2.6
1,148,969	-		Sama_0948	0.58	-0.5
1,148,997	+		Sama_0948	0.60	+0.2
1,149,048	+		Sama_0948	0.64	+0.4
1,149,048	+		Sama_0948	0.64	+0.8
1,149,048	+		Sama_0948	0.64	-1.0
1,149,048	+		Sama_0948	0.64	-2.7
1,149,049	-		Sama_0948	0.64	+0.6
1,149,049	-		Sama_0948	0.64	+0.0
1,149,049	-		Sama_0948	0.64	-1.1
1,149,049	-		Sama_0948	0.64	+1.8
1,149,049	-		Sama_0948	0.64	-0.8
1,149,055	+		Sama_0948	0.64	+3.2
1,149,055	+		Sama_0948	0.64	+2.0
1,149,055	+		Sama_0948	0.64	+2.7
1,149,055	+		Sama_0948	0.64	-0.8
1,149,055	+		Sama_0948	0.64	-0.8
1,149,055	+		Sama_0948	0.64	+0.9
1,149,056	-		Sama_0948	0.65	+0.8
1,149,056	-		Sama_0948	0.65	-0.1
1,149,056	-		Sama_0948	0.65	-1.6
1,149,056	-		Sama_0948	0.65	+0.1
1,149,056	-		Sama_0948	0.65	-1.6
1,149,056	-		Sama_0948	0.65	-0.1
1,149,065	+		Sama_0948	0.65	-0.2
1,149,065	+		Sama_0948	0.65	+1.4
1,149,065	+		Sama_0948	0.65	-0.8
1,149,066	-		Sama_0948	0.65	-1.5
1,149,066	-		Sama_0948	0.65	-0.4
1,149,066	-		Sama_0948	0.65	-0.5
1,149,069	+		Sama_0948	0.66	-2.2
1,149,069	+		Sama_0948	0.66	-0.8
1,149,069	+		Sama_0948	0.66	-2.1
1,149,070	-		Sama_0948	0.66	-2.1
1,149,070	-		Sama_0948	0.66	-2.2
1,149,070	-		Sama_0948	0.66	-0.8
1,149,070	-		Sama_0948	0.66	+1.4
1,149,082	+		Sama_0948	0.67	-1.1
1,149,082	+		Sama_0948	0.67	-0.5
1,149,083	-		Sama_0948	0.67	-1.4
1,149,089	+		Sama_0948	0.67	-1.6
1,149,089	+		Sama_0948	0.67	+1.2
1,149,089	+		Sama_0948	0.67	-0.8
1,149,089	+		Sama_0948	0.67	-0.2
1,149,089	+		Sama_0948	0.67	-1.0
1,149,090	-		Sama_0948	0.67	-0.8
1,149,090	-		Sama_0948	0.67	-0.4
1,149,103	-		Sama_0948	0.68	+0.2
1,149,179	+		Sama_0948	0.74	+2.2
1,149,179	+		Sama_0948	0.74	-0.1
1,149,180	-		Sama_0948	0.74	+1.2
1,149,366	+		Sama_0948	0.88	+1.5
1,149,366	+		Sama_0948	0.88	-0.6
1,149,366	+		Sama_0948	0.88	-2.0
1,149,367	-		Sama_0948	0.88	+1.0
1,149,367	-		Sama_0948	0.88	+1.9
1,149,367	-		Sama_0948	0.88	-0.6
1,149,469	+				-0.8
1,149,469	+				-0.4
1,149,469	+				-2.5
1,149,469	+				-2.2
1,149,469	+				-4.0
1,149,470	-				+1.1
1,149,470	-				-1.5
1,149,487	+				-0.3
1,149,487	+				+2.2
1,149,487	+				-1.2
1,149,487	+				-0.5
1,149,487	+				+2.0
1,149,488	-				+1.2
1,149,488	-				+1.1
1,149,488	-				+2.4
1,149,504	+				+1.0
1,149,504	+				-0.5
1,149,504	+				-1.1
1,149,504	+				+1.7
1,149,504	+				+0.7
1,149,504	+				+1.2
1,149,505	-				+2.1
1,149,505	-				-0.4
1,149,505	-				+2.2
1,149,505	-				-1.8
1,149,505	-				+0.1
1,149,513	+				+0.0
1,149,513	+				-0.6
1,149,514	-				-1.7
1,149,514	-				+0.5
1,149,514	-				+3.6
1,149,533	+				+1.0
1,149,542	+				+0.6
1,149,543	-				-2.2
1,149,543	-				+2.4
1,149,553	-				-1.4
1,149,563	+				+0.6
1,149,605	+				-2.0
1,149,605	+				-1.6
1,149,605	+				+0.1
1,149,606	-				-2.6
1,149,606	-				-0.8
1,149,628	-				-1.4
1,149,628	-				-0.8
1,149,628	-				-0.4
1,149,861	-				-0.6
1,149,861	-				-0.6
1,149,861	-				-1.4
1,149,861	-				-0.6
1,149,873	-				-1.0
1,149,924	+				+0.2
1,149,925	-				+1.0
1,149,926	+				+0.4
1,149,926	+				-0.4
1,149,926	+				+3.5
1,149,927	-				-2.5
1,149,927	-				-3.2
1,149,927	-				-0.7
1,149,927	-				-0.8
1,149,929	+				-1.4
1,149,929	+				+0.9
1,149,929	+				+1.2
1,149,929	+				-2.1
1,149,930	-				-1.6
1,149,930	-				-1.3
1,149,930	-				-3.0
1,149,930	-				+1.5
1,149,930	-				-1.2
1,149,930	-				-2.4
1,149,930	-				-0.6
1,149,930	-				+1.2
1,149,931	+				-0.9
1,150,018	+				+0.8
1,150,018	+				-0.4
1,150,018	+				+5.1
1,150,019	-				+1.1
1,150,019	-				-3.0
1,150,019	-				+1.4
1,150,019	-				+2.3
1,150,031	-				-1.4
1,150,125	+				+1.6
1,150,126	-				+1.0
1,150,147	-				-0.4
1,150,168	+				-0.4
1,150,169	-				-1.4
1,150,187	+				-1.5
1,150,188	-				-3.2
1,150,208	+				+1.2
1,150,226	+				-0.9
1,150,226	+				-0.1
1,150,226	+				+1.2
1,150,226	+				+1.7
1,150,226	+				-0.5
1,150,226	+				+0.1
1,150,227	-				-2.1
1,150,227	-				+3.0
1,150,337	+		Sama_0949	0.20	-0.4
1,150,337	+		Sama_0949	0.20	+0.5
1,150,338	-		Sama_0949	0.20	-1.9
1,150,338	-		Sama_0949	0.20	+1.2
1,150,338	-		Sama_0949	0.20	+0.3
1,150,338	-		Sama_0949	0.20	-1.4
1,150,338	-		Sama_0949	0.20	-2.5
1,150,341	+		Sama_0949	0.21	+0.4
1,150,341	+		Sama_0949	0.21	-0.2
1,150,341	+		Sama_0949	0.21	+3.0
1,150,341	+		Sama_0949	0.21	-0.4
1,150,341	+		Sama_0949	0.21	-0.8
1,150,342	-		Sama_0949	0.21	+1.1
1,150,345	-		Sama_0949	0.22	-0.8
1,150,356	+		Sama_0949	0.24	-2.2
1,150,356	+		Sama_0949	0.24	+1.9
1,150,399	+		Sama_0949	0.32	-1.3
1,150,400	-		Sama_0949	0.32	+1.2
1,150,400	-		Sama_0949	0.32	-1.6
1,150,400	-		Sama_0949	0.32	-0.4
1,150,400	-		Sama_0949	0.32	-1.3
1,150,409	-		Sama_0949	0.33	-1.1
1,150,414	+		Sama_0949	0.34	+0.2
1,150,492	+		Sama_0949	0.49	-0.8
1,150,492	+		Sama_0949	0.49	-1.2
1,150,510	-		Sama_0949	0.52	+1.1
1,150,510	-		Sama_0949	0.52	-3.2