Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0805 and Sama_0806 are separated by 41 nucleotides Sama_0806 and Sama_0807 are separated by 49 nucleotides Sama_0807 and Sama_0808 are separated by 132 nucleotides
Sama_0805: Sama_0805 - hypothetical protein (RefSeq), at 989,464 to 990,213
_0805
Sama_0806: Sama_0806 - hypothetical protein (RefSeq), at 990,255 to 990,905
_0806
Sama_0807: Sama_0807 - alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen (RefSeq), at 990,955 to 991,638
_0807
Sama_0808: Sama_0808 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 991,771 to 993,069
_0808
Position (kb) 990
991
992 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 990.016 kb on + strand, within Sama_0805 at 990.016 kb on + strand, within Sama_0805 at 990.017 kb on - strand, within Sama_0805 at 990.057 kb on + strand, within Sama_0805 at 990.057 kb on + strand, within Sama_0805 at 990.057 kb on + strand, within Sama_0805 at 990.058 kb on - strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.089 kb on + strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.090 kb on - strand, within Sama_0805 at 990.093 kb on - strand, within Sama_0805 at 990.093 kb on - strand, within Sama_0805 at 990.093 kb on - strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.125 kb on + strand, within Sama_0805 at 990.144 kb on + strand at 990.145 kb on - strand at 990.145 kb on - strand at 990.145 kb on - strand at 990.145 kb on - strand at 990.205 kb on + strand at 990.206 kb on - strand at 990.206 kb on - strand at 990.206 kb on - strand at 990.206 kb on - strand at 990.246 kb on - strand at 990.246 kb on - strand at 990.246 kb on - strand at 990.308 kb on + strand at 990.308 kb on + strand at 990.309 kb on - strand at 990.310 kb on + strand at 990.310 kb on + strand at 990.311 kb on - strand at 990.311 kb on - strand at 990.311 kb on - strand at 990.329 kb on + strand, within Sama_0806 at 990.329 kb on + strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.330 kb on - strand, within Sama_0806 at 990.463 kb on + strand, within Sama_0806 at 990.482 kb on + strand, within Sama_0806 at 990.483 kb on - strand, within Sama_0806 at 990.525 kb on - strand, within Sama_0806 at 990.542 kb on - strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.581 kb on + strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.582 kb on - strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.605 kb on + strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.606 kb on - strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.628 kb on + strand, within Sama_0806 at 990.629 kb on - strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.639 kb on + strand, within Sama_0806 at 990.640 kb on - strand, within Sama_0806 at 990.640 kb on - strand, within Sama_0806 at 990.640 kb on - strand, within Sama_0806 at 990.680 kb on + strand, within Sama_0806 at 990.681 kb on - strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.707 kb on + strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.708 kb on - strand, within Sama_0806 at 990.747 kb on + strand, within Sama_0806 at 990.768 kb on - strand, within Sama_0806 at 990.874 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.890 kb on + strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.891 kb on - strand at 990.896 kb on + strand at 990.896 kb on + strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.897 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.919 kb on - strand at 990.924 kb on - strand at 990.945 kb on + strand at 990.946 kb on - strand at 990.957 kb on - strand at 990.957 kb on - strand at 990.994 kb on - strand at 991.034 kb on + strand, within Sama_0807 at 991.034 kb on + strand, within Sama_0807 at 991.035 kb on - strand, within Sama_0807 at 991.048 kb on - strand, within Sama_0807 at 991.059 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.070 kb on + strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.071 kb on - strand, within Sama_0807 at 991.154 kb on + strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807 at 991.155 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.239 kb on - strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.248 kb on + strand, within Sama_0807 at 991.249 kb on - strand, within Sama_0807 at 991.249 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.295 kb on - strand, within Sama_0807 at 991.344 kb on + strand, within Sama_0807 at 991.344 kb on + strand, within Sama_0807 at 991.422 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.510 kb on + strand, within Sama_0807 at 991.511 kb on - strand, within Sama_0807 at 991.551 kb on + strand, within Sama_0807 at 991.552 kb on - strand, within Sama_0807 at 991.590 kb on + strand at 991.590 kb on + strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.591 kb on - strand at 991.599 kb on + strand at 991.599 kb on + strand at 991.599 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.603 kb on + strand at 991.604 kb on - strand at 991.604 kb on - strand at 991.638 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.656 kb on + strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.657 kb on - strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.662 kb on + strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.663 kb on - strand at 991.733 kb on - strand at 991.745 kb on + strand at 991.746 kb on - strand at 991.746 kb on - strand at 991.746 kb on - strand at 991.765 kb on - strand at 991.765 kb on - strand at 991.765 kb on - strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.772 kb on + strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 991.773 kb on - strand at 992.087 kb on + strand, within Sama_0808 at 992.088 kb on - strand, within Sama_0808 at 992.126 kb on + strand, within Sama_0808 at 992.422 kb on - strand, within Sama_0808 at 992.453 kb on - strand, within Sama_0808
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 990,016 + Sama_0805 0.74 +0.0 990,016 + Sama_0805 0.74 -0.3 990,017 - Sama_0805 0.74 +0.0 990,057 + Sama_0805 0.79 +1.9 990,057 + Sama_0805 0.79 -0.7 990,057 + Sama_0805 0.79 +3.6 990,058 - Sama_0805 0.79 -1.5 990,089 + Sama_0805 0.83 -1.6 990,089 + Sama_0805 0.83 -0.5 990,089 + Sama_0805 0.83 -1.5 990,089 + Sama_0805 0.83 +1.5 990,089 + Sama_0805 0.83 -2.6 990,089 + Sama_0805 0.83 +1.8 990,089 + Sama_0805 0.83 +0.2 990,089 + Sama_0805 0.83 +0.4 990,089 + Sama_0805 0.83 -0.1 990,089 + Sama_0805 0.83 -1.3 990,089 + Sama_0805 0.83 -0.7 990,089 + Sama_0805 0.83 -1.3 990,089 + Sama_0805 0.83 +1.3 990,089 + Sama_0805 0.83 +0.9 990,090 - Sama_0805 0.83 +1.9 990,090 - Sama_0805 0.83 +1.3 990,090 - Sama_0805 0.83 -1.8 990,090 - Sama_0805 0.83 -2.8 990,090 - Sama_0805 0.83 -0.3 990,090 - Sama_0805 0.83 -1.0 990,090 - Sama_0805 0.83 -2.6 990,090 - Sama_0805 0.83 -0.4 990,090 - Sama_0805 0.83 +0.7 990,090 - Sama_0805 0.83 +1.5 990,093 - Sama_0805 0.84 -3.0 990,093 - Sama_0805 0.84 -0.2 990,093 - Sama_0805 0.84 +1.6 990,125 + Sama_0805 0.88 -0.6 990,125 + Sama_0805 0.88 +0.3 990,125 + Sama_0805 0.88 +1.8 990,125 + Sama_0805 0.88 -0.7 990,144 + +0.4 990,145 - -1.0 990,145 - -1.0 990,145 - -1.3 990,145 - -1.0 990,205 + -1.1 990,206 - -0.8 990,206 - -0.4 990,206 - +0.1 990,206 - -1.3 990,246 - +2.3 990,246 - -0.3 990,246 - +0.9 990,308 + +0.3 990,308 + -2.3 990,309 - +0.5 990,310 + +1.7 990,310 + -2.4 990,311 - -0.7 990,311 - +0.7 990,311 - -0.3 990,329 + Sama_0806 0.11 -1.3 990,329 + Sama_0806 0.11 +2.6 990,330 - Sama_0806 0.12 -0.7 990,330 - Sama_0806 0.12 +0.3 990,330 - Sama_0806 0.12 +1.3 990,330 - Sama_0806 0.12 +0.2 990,463 + Sama_0806 0.32 -3.5 990,482 + Sama_0806 0.35 +1.7 990,483 - Sama_0806 0.35 +2.6 990,525 - Sama_0806 0.41 +1.0 990,542 - Sama_0806 0.44 +0.1 990,581 + Sama_0806 0.50 +0.5 990,581 + Sama_0806 0.50 -0.8 990,581 + Sama_0806 0.50 -1.0 990,581 + Sama_0806 0.50 -1.8 990,581 + Sama_0806 0.50 +1.7 990,581 + Sama_0806 0.50 +0.7 990,582 - Sama_0806 0.50 +1.1 990,582 - Sama_0806 0.50 +2.3 990,582 - Sama_0806 0.50 +2.1 990,582 - Sama_0806 0.50 -0.8 990,582 - Sama_0806 0.50 -2.7 990,582 - Sama_0806 0.50 -0.3 990,582 - Sama_0806 0.50 -1.0 990,582 - Sama_0806 0.50 -1.4 990,605 + Sama_0806 0.54 -0.1 990,605 + Sama_0806 0.54 +0.8 990,605 + Sama_0806 0.54 -0.3 990,605 + Sama_0806 0.54 -1.5 990,606 - Sama_0806 0.54 -1.2 990,606 - Sama_0806 0.54 +0.9 990,606 - Sama_0806 0.54 -2.8 990,606 - Sama_0806 0.54 +1.3 990,628 + Sama_0806 0.57 +1.3 990,628 + Sama_0806 0.57 -1.3 990,628 + Sama_0806 0.57 +0.7 990,628 + Sama_0806 0.57 -0.4 990,629 - Sama_0806 0.57 +0.9 990,639 + Sama_0806 0.59 -0.3 990,639 + Sama_0806 0.59 -2.1 990,639 + Sama_0806 0.59 +2.0 990,639 + Sama_0806 0.59 +0.5 990,639 + Sama_0806 0.59 +0.9 990,639 + Sama_0806 0.59 +0.3 990,639 + Sama_0806 0.59 -1.4 990,640 - Sama_0806 0.59 -0.3 990,640 - Sama_0806 0.59 +1.3 990,640 - Sama_0806 0.59 +1.9 990,680 + Sama_0806 0.65 +0.3 990,681 - Sama_0806 0.65 -0.4 990,707 + Sama_0806 0.69 -0.3 990,707 + Sama_0806 0.69 +0.3 990,707 + Sama_0806 0.69 +1.5 990,707 + Sama_0806 0.69 -0.9 990,707 + Sama_0806 0.69 -0.1 990,708 - Sama_0806 0.70 -1.9 990,708 - Sama_0806 0.70 +0.7 990,708 - Sama_0806 0.70 -1.3 990,708 - Sama_0806 0.70 -1.3 990,747 + Sama_0806 0.76 +0.0 990,768 - Sama_0806 0.79 -0.2 990,874 + +1.3 990,890 + -1.0 990,890 + +1.8 990,890 + -0.3 990,890 + -1.3 990,890 + -1.0 990,890 + +1.7 990,890 + +1.0 990,890 + +3.4 990,891 - -1.0 990,891 - +0.3 990,891 - +1.5 990,891 - +0.7 990,891 - +0.7 990,891 - -0.5 990,891 - +0.0 990,891 - -2.5 990,891 - +0.7 990,891 - +0.3 990,891 - +0.9 990,896 + -1.5 990,896 + +1.3 990,897 - +0.3 990,897 - -1.5 990,897 - +0.6 990,919 - -0.3 990,919 - +0.2 990,919 - +5.0 990,924 - +2.5 990,945 + -1.7 990,946 - +0.6 990,957 - -0.3 990,957 - +0.4 990,994 - +1.5 991,034 + Sama_0807 0.12 -2.0 991,034 + Sama_0807 0.12 +0.8 991,035 - Sama_0807 0.12 -1.4 991,048 - Sama_0807 0.14 -0.8 991,059 + Sama_0807 0.15 -1.3 991,070 + Sama_0807 0.17 +0.6 991,070 + Sama_0807 0.17 +1.5 991,070 + Sama_0807 0.17 -1.6 991,070 + Sama_0807 0.17 -1.3 991,070 + Sama_0807 0.17 +1.5 991,070 + Sama_0807 0.17 -1.4 991,071 - Sama_0807 0.17 +1.4 991,071 - Sama_0807 0.17 -0.3 991,071 - Sama_0807 0.17 -2.6 991,071 - Sama_0807 0.17 +0.1 991,071 - Sama_0807 0.17 +0.2 991,154 + Sama_0807 0.29 +1.6 991,155 - Sama_0807 0.29 +1.2 991,155 - Sama_0807 0.29 +1.7 991,239 - Sama_0807 0.42 +2.2 991,239 - Sama_0807 0.42 +0.3 991,239 - Sama_0807 0.42 +2.9 991,248 + Sama_0807 0.43 +1.2 991,248 + Sama_0807 0.43 -2.9 991,248 + Sama_0807 0.43 +3.7 991,248 + Sama_0807 0.43 +0.0 991,248 + Sama_0807 0.43 +0.7 991,248 + Sama_0807 0.43 -1.0 991,249 - Sama_0807 0.43 -1.3 991,249 - Sama_0807 0.43 -0.7 991,295 - Sama_0807 0.50 +2.3 991,295 - Sama_0807 0.50 -1.2 991,295 - Sama_0807 0.50 +2.0 991,295 - Sama_0807 0.50 -2.3 991,344 + Sama_0807 0.57 -1.4 991,344 + Sama_0807 0.57 -1.0 991,422 + Sama_0807 0.68 +0.8 991,510 + Sama_0807 0.81 +0.2 991,510 + Sama_0807 0.81 -1.3 991,510 + Sama_0807 0.81 -0.7 991,511 - Sama_0807 0.81 +1.6 991,551 + Sama_0807 0.87 -0.7 991,552 - Sama_0807 0.87 -2.5 991,590 + -1.1 991,590 + -1.5 991,591 - +1.1 991,591 - +1.9 991,591 - -0.5 991,591 - -2.4 991,591 - -2.0 991,599 + +1.3 991,599 + -0.7 991,599 + +1.7 991,603 + +2.9 991,603 + +1.1 991,603 + -0.8 991,603 + +0.2 991,603 + -1.7 991,603 + -2.0 991,604 - -1.0 991,604 - -2.1 991,638 + -1.7 991,656 + +2.4 991,656 + -0.5 991,656 + -2.5 991,656 + -1.0 991,656 + -1.0 991,656 + +0.7 991,656 + -0.1 991,657 - -2.5 991,657 - -1.0 991,657 - +1.0 991,657 - -2.5 991,657 - +1.2 991,657 - -3.5 991,662 + -0.4 991,662 + -0.3 991,662 + +1.3 991,662 + +0.9 991,662 + -0.8 991,662 + -1.3 991,662 + +0.8 991,663 - +3.1 991,663 - +1.0 991,663 - -1.7 991,663 - +2.9 991,663 - +0.5 991,663 - -0.7 991,663 - +1.7 991,663 - +0.9 991,733 - -1.0 991,745 + +0.7 991,746 - -0.5 991,746 - -0.2 991,746 - +0.6 991,765 - -0.7 991,765 - -0.4 991,765 - +1.1 991,772 + -1.7 991,772 + -0.7 991,772 + +1.3 991,772 + +0.7 991,772 + -1.5 991,772 + +2.8 991,772 + +1.4 991,773 - -0.7 991,773 - -0.5 991,773 - +3.0 991,773 - +0.7 991,773 - -0.7 991,773 - +2.8 992,087 + Sama_0808 0.24 +0.3 992,088 - Sama_0808 0.24 +0.3 992,126 + Sama_0808 0.27 +0.3 992,422 - Sama_0808 0.50 +1.0 992,453 - Sama_0808 0.53 -0.3
Or see this region's nucleotide sequence