Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0748 and Sama_0749 are separated by 80 nucleotides Sama_0749 and Sama_0750 are separated by 155 nucleotides Sama_0750 and Sama_0751 are separated by 377 nucleotides
Sama_0748: Sama_0748 - response regulator receiver protein (RefSeq), at 923,436 to 924,374
_0748
Sama_0749: Sama_0749 - hypothetical protein (RefSeq), at 924,455 to 924,718
_0749
Sama_0750: Sama_0750 - catalase-like protein (RefSeq), at 924,874 to 925,872
_0750
Sama_0751: Sama_0751 - GTP-binding protein HflX (RefSeq), at 926,250 to 927,581
_0751
Position (kb) 924
925
926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 923.919 kb on + strand, within Sama_0748 at 923.919 kb on + strand, within Sama_0748 at 923.920 kb on - strand, within Sama_0748 at 923.920 kb on - strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.964 kb on - strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.105 kb on + strand, within Sama_0748 at 924.105 kb on + strand, within Sama_0748 at 924.106 kb on - strand, within Sama_0748 at 924.273 kb on + strand, within Sama_0748 at 924.308 kb on + strand at 924.313 kb on + strand at 924.313 kb on + strand at 924.314 kb on - strand at 924.314 kb on - strand at 924.314 kb on - strand at 924.318 kb on + strand at 924.318 kb on + strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.383 kb on - strand at 924.457 kb on - strand at 924.538 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.666 kb on - strand, within Sama_0749 at 924.706 kb on + strand at 924.764 kb on - strand at 924.820 kb on - strand at 924.820 kb on - strand at 924.875 kb on + strand at 924.875 kb on + strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.888 kb on + strand at 924.902 kb on + strand at 924.926 kb on - strand at 924.945 kb on + strand at 924.961 kb on + strand at 924.961 kb on + strand at 925.030 kb on + strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.093 kb on - strand, within Sama_0750 at 925.093 kb on - strand, within Sama_0750 at 925.095 kb on + strand, within Sama_0750 at 925.095 kb on + strand, within Sama_0750 at 925.096 kb on - strand, within Sama_0750 at 925.121 kb on + strand, within Sama_0750 at 925.121 kb on + strand, within Sama_0750 at 925.122 kb on - strand, within Sama_0750 at 925.122 kb on - strand, within Sama_0750 at 925.152 kb on + strand, within Sama_0750 at 925.153 kb on - strand, within Sama_0750 at 925.210 kb on - strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.299 kb on - strand, within Sama_0750 at 925.309 kb on + strand, within Sama_0750 at 925.310 kb on - strand, within Sama_0750 at 925.310 kb on - strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.506 kb on + strand, within Sama_0750 at 925.507 kb on - strand, within Sama_0750 at 925.507 kb on - strand, within Sama_0750 at 925.507 kb on - strand, within Sama_0750 at 925.542 kb on + strand, within Sama_0750 at 925.543 kb on - strand, within Sama_0750 at 925.567 kb on + strand, within Sama_0750 at 925.567 kb on + strand, within Sama_0750 at 925.568 kb on - strand, within Sama_0750 at 925.588 kb on + strand, within Sama_0750 at 925.612 kb on - strand, within Sama_0750 at 925.638 kb on + strand, within Sama_0750 at 925.686 kb on + strand, within Sama_0750 at 925.726 kb on - strand, within Sama_0750 at 925.762 kb on - strand, within Sama_0750 at 925.818 kb on + strand at 925.836 kb on + strand at 925.836 kb on + strand at 925.836 kb on + strand at 925.836 kb on + strand at 925.862 kb on + strand at 925.862 kb on + strand at 925.862 kb on + strand at 925.862 kb on + strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.863 kb on - strand at 925.919 kb on + strand at 925.922 kb on + strand at 925.922 kb on + strand at 925.926 kb on - strand at 926.007 kb on - strand at 926.007 kb on - strand at 926.027 kb on + strand at 926.027 kb on + strand at 926.028 kb on - strand at 926.161 kb on + strand at 926.161 kb on + strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.162 kb on - strand at 926.170 kb on + strand at 926.171 kb on - strand at 926.172 kb on + strand at 926.195 kb on + strand at 926.195 kb on + strand at 926.195 kb on + strand at 926.196 kb on - strand at 926.249 kb on + strand at 926.249 kb on + strand at 926.250 kb on - strand at 926.250 kb on - strand at 926.250 kb on - strand at 926.275 kb on + strand at 926.276 kb on - strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.314 kb on + strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.315 kb on - strand at 926.385 kb on + strand, within Sama_0751 at 926.386 kb on - strand, within Sama_0751 at 926.386 kb on - strand, within Sama_0751 at 926.386 kb on - strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.414 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.509 kb on + strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.510 kb on - strand, within Sama_0751 at 926.587 kb on + strand, within Sama_0751 at 926.587 kb on + strand, within Sama_0751 at 926.587 kb on + strand, within Sama_0751 at 926.588 kb on - strand, within Sama_0751 at 926.588 kb on - strand, within Sama_0751 at 926.588 kb on - strand, within Sama_0751 at 926.603 kb on + strand, within Sama_0751 at 926.604 kb on - strand, within Sama_0751 at 926.687 kb on + strand, within Sama_0751 at 926.688 kb on - strand, within Sama_0751 at 926.727 kb on + strand, within Sama_0751 at 926.728 kb on - strand, within Sama_0751 at 926.728 kb on - strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.731 kb on + strand, within Sama_0751 at 926.869 kb on + strand, within Sama_0751 at 926.869 kb on + strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751 at 926.870 kb on - strand, within Sama_0751
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 923,919 + Sama_0748 0.51 +0.0 923,919 + Sama_0748 0.51 +0.9 923,920 - Sama_0748 0.52 -2.0 923,920 - Sama_0748 0.52 -0.7 923,963 + Sama_0748 0.56 +0.2 923,963 + Sama_0748 0.56 +1.1 923,963 + Sama_0748 0.56 +0.3 923,964 - Sama_0748 0.56 +0.6 923,991 + Sama_0748 0.59 +1.3 923,991 + Sama_0748 0.59 -1.5 923,991 + Sama_0748 0.59 -0.4 924,004 - Sama_0748 0.60 +2.5 924,004 - Sama_0748 0.60 +2.2 924,004 - Sama_0748 0.60 +0.6 924,004 - Sama_0748 0.60 +0.5 924,105 + Sama_0748 0.71 +1.3 924,105 + Sama_0748 0.71 +0.2 924,106 - Sama_0748 0.71 +1.1 924,273 + Sama_0748 0.89 -0.7 924,308 + +1.3 924,313 + +0.5 924,313 + -0.2 924,314 - -0.5 924,314 - +0.8 924,314 - +1.1 924,318 + +1.4 924,318 + +2.9 924,319 - -2.1 924,319 - +0.8 924,319 - +2.2 924,319 - +0.5 924,319 - +1.0 924,319 - -2.5 924,353 + +0.8 924,353 + +0.3 924,353 + +0.3 924,353 + -2.1 924,353 + -1.4 924,353 + +1.8 924,353 + +0.8 924,353 + +1.7 924,353 + -0.8 924,353 + -1.0 924,353 + +1.9 924,353 + +0.3 924,353 + +0.0 924,353 + +1.1 924,353 + -2.5 924,353 + +3.1 924,353 + -0.7 924,353 + +1.4 924,354 - +3.7 924,354 - -1.8 924,354 - +5.0 924,354 - -0.5 924,354 - -1.0 924,354 - +1.0 924,354 - -1.2 924,354 - +0.7 924,354 - +3.2 924,354 - -1.5 924,354 - -0.4 924,354 - -1.2 924,383 - -0.5 924,457 - +1.3 924,538 + Sama_0749 0.31 +0.5 924,598 + Sama_0749 0.54 +0.1 924,598 + Sama_0749 0.54 -1.0 924,598 + Sama_0749 0.54 -2.7 924,599 - Sama_0749 0.55 -0.5 924,599 - Sama_0749 0.55 -1.7 924,599 - Sama_0749 0.55 +1.0 924,599 - Sama_0749 0.55 +3.3 924,665 + Sama_0749 0.80 -0.5 924,665 + Sama_0749 0.80 -1.0 924,665 + Sama_0749 0.80 -1.5 924,665 + Sama_0749 0.80 -0.7 924,666 - Sama_0749 0.80 -0.1 924,706 + +0.8 924,764 - -0.2 924,820 - -0.1 924,820 - +0.3 924,875 + +1.3 924,875 + +1.3 924,876 - +0.9 924,876 - -1.5 924,876 - -2.1 924,876 - -2.1 924,888 + -2.0 924,902 + -1.7 924,926 - -0.1 924,945 + +0.8 924,961 + +0.5 924,961 + -2.7 925,030 + Sama_0750 0.16 -1.7 925,031 - Sama_0750 0.16 +0.8 925,031 - Sama_0750 0.16 -0.1 925,031 - Sama_0750 0.16 -0.2 925,092 + Sama_0750 0.22 +1.6 925,092 + Sama_0750 0.22 +3.3 925,092 + Sama_0750 0.22 -0.5 925,093 - Sama_0750 0.22 +2.0 925,093 - Sama_0750 0.22 +1.3 925,095 + Sama_0750 0.22 -1.0 925,095 + Sama_0750 0.22 +0.3 925,096 - Sama_0750 0.22 +1.3 925,121 + Sama_0750 0.25 -1.2 925,121 + Sama_0750 0.25 -0.6 925,122 - Sama_0750 0.25 -2.0 925,122 - Sama_0750 0.25 +1.0 925,152 + Sama_0750 0.28 -1.7 925,153 - Sama_0750 0.28 -1.0 925,210 - Sama_0750 0.34 +1.0 925,298 + Sama_0750 0.42 -1.5 925,298 + Sama_0750 0.42 +1.2 925,298 + Sama_0750 0.42 -2.5 925,299 - Sama_0750 0.43 +0.0 925,309 + Sama_0750 0.44 -1.5 925,310 - Sama_0750 0.44 +2.9 925,310 - Sama_0750 0.44 +0.9 925,364 + Sama_0750 0.49 +0.0 925,364 + Sama_0750 0.49 +1.4 925,364 + Sama_0750 0.49 -1.2 925,365 - Sama_0750 0.49 -0.7 925,365 - Sama_0750 0.49 -1.7 925,365 - Sama_0750 0.49 -1.1 925,365 - Sama_0750 0.49 -2.3 925,365 - Sama_0750 0.49 -1.2 925,506 + Sama_0750 0.63 -2.2 925,506 + Sama_0750 0.63 -1.2 925,506 + Sama_0750 0.63 -0.7 925,506 + Sama_0750 0.63 -0.7 925,507 - Sama_0750 0.63 -1.7 925,507 - Sama_0750 0.63 +1.9 925,507 - Sama_0750 0.63 -1.8 925,542 + Sama_0750 0.67 -0.7 925,543 - Sama_0750 0.67 -2.5 925,567 + Sama_0750 0.69 +0.2 925,567 + Sama_0750 0.69 -2.0 925,568 - Sama_0750 0.69 -0.7 925,588 + Sama_0750 0.71 -0.7 925,612 - Sama_0750 0.74 +0.9 925,638 + Sama_0750 0.76 -0.9 925,686 + Sama_0750 0.81 +1.7 925,726 - Sama_0750 0.85 -0.8 925,762 - Sama_0750 0.89 +0.0 925,818 + -2.8 925,836 + +0.3 925,836 + +0.5 925,836 + -0.5 925,836 + +0.4 925,862 + -0.8 925,862 + +0.0 925,862 + +0.8 925,862 + +4.2 925,863 - -2.0 925,863 - -1.7 925,863 - -2.0 925,863 - -0.4 925,863 - +1.3 925,863 - +0.0 925,919 + +0.5 925,922 + -0.7 925,922 + +1.1 925,926 - -0.2 926,007 - +0.1 926,007 - +2.8 926,027 + -3.2 926,027 + +0.1 926,028 - -0.5 926,161 + -1.2 926,161 + +0.7 926,162 - +0.3 926,162 - -1.7 926,162 - -0.7 926,162 - -1.1 926,162 - -0.6 926,162 - +0.1 926,170 + -0.7 926,171 - -0.1 926,172 + +1.6 926,195 + -0.2 926,195 + +1.3 926,195 + +1.3 926,196 - +1.3 926,249 + -1.3 926,249 + -3.0 926,250 - +0.0 926,250 - +0.3 926,250 - -2.1 926,275 + +0.8 926,276 - -0.7 926,314 + +0.3 926,314 + +0.8 926,314 + -2.5 926,314 + +0.7 926,314 + +0.0 926,314 + -2.1 926,314 + +0.5 926,314 + +2.1 926,314 + +2.7 926,314 + -1.5 926,314 + +2.3 926,314 + -1.0 926,314 + -0.5 926,315 - +0.3 926,315 - -2.7 926,315 - -0.7 926,315 - -2.1 926,315 - +2.2 926,315 - -2.6 926,315 - +1.8 926,315 - +0.1 926,315 - -1.2 926,315 - -0.8 926,315 - -1.0 926,315 - +0.3 926,315 - -0.7 926,315 - -1.0 926,315 - -1.4 926,385 + Sama_0751 0.10 +0.3 926,386 - Sama_0751 0.10 -3.1 926,386 - Sama_0751 0.10 -0.1 926,386 - Sama_0751 0.10 -2.4 926,414 + Sama_0751 0.12 -3.2 926,414 + Sama_0751 0.12 +2.1 926,414 + Sama_0751 0.12 -1.5 926,414 + Sama_0751 0.12 -1.1 926,414 + Sama_0751 0.12 +3.1 926,509 + Sama_0751 0.19 +1.2 926,509 + Sama_0751 0.19 -1.1 926,509 + Sama_0751 0.19 -0.5 926,509 + Sama_0751 0.19 -1.0 926,509 + Sama_0751 0.19 -1.2 926,509 + Sama_0751 0.19 +0.6 926,509 + Sama_0751 0.19 +0.1 926,509 + Sama_0751 0.19 +1.2 926,509 + Sama_0751 0.19 -0.7 926,509 + Sama_0751 0.19 +0.4 926,509 + Sama_0751 0.19 -1.2 926,509 + Sama_0751 0.19 +0.4 926,509 + Sama_0751 0.19 +0.8 926,509 + Sama_0751 0.19 +0.3 926,509 + Sama_0751 0.19 +0.7 926,509 + Sama_0751 0.19 -1.2 926,510 - Sama_0751 0.20 -0.5 926,510 - Sama_0751 0.20 +3.6 926,510 - Sama_0751 0.20 +0.0 926,510 - Sama_0751 0.20 -0.7 926,510 - Sama_0751 0.20 -0.7 926,510 - Sama_0751 0.20 -0.9 926,587 + Sama_0751 0.25 +2.0 926,587 + Sama_0751 0.25 +0.5 926,587 + Sama_0751 0.25 +2.5 926,588 - Sama_0751 0.25 -0.7 926,588 - Sama_0751 0.25 -2.2 926,588 - Sama_0751 0.25 -1.7 926,603 + Sama_0751 0.27 -2.2 926,604 - Sama_0751 0.27 -0.2 926,687 + Sama_0751 0.33 -2.2 926,688 - Sama_0751 0.33 +0.9 926,727 + Sama_0751 0.36 -0.7 926,728 - Sama_0751 0.36 +0.6 926,728 - Sama_0751 0.36 +0.3 926,731 + Sama_0751 0.36 -2.0 926,731 + Sama_0751 0.36 -1.0 926,731 + Sama_0751 0.36 +0.7 926,731 + Sama_0751 0.36 +2.4 926,869 + Sama_0751 0.46 +1.6 926,869 + Sama_0751 0.46 +0.7 926,870 - Sama_0751 0.47 +0.8 926,870 - Sama_0751 0.47 -0.7 926,870 - Sama_0751 0.47 -0.7 926,870 - Sama_0751 0.47 -1.7 926,870 - Sama_0751 0.47 -1.2
Or see this region's nucleotide sequence