Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0622 and Sama_0623 are separated by 84 nucleotides Sama_0623 and Sama_0624 are separated by 146 nucleotides Sama_0624 and Sama_0625 are separated by 82 nucleotides Sama_0625 and Sama_0626 are separated by 124 nucleotides
Sama_0622: Sama_0622 - putative methyl-accepting chemotaxis sensory transducer (RefSeq), at 775,744 to 777,363
_0622
Sama_0623: Sama_0623 - hypothetical protein (RefSeq), at 777,448 to 777,702
_0623
Sama_0624: Sama_0624 - hypothetical protein (RefSeq), at 777,849 to 778,052
_0624
Sama_0625: Sama_0625 - hypothetical protein (RefSeq), at 778,135 to 778,323
_0625
Sama_0626: Sama_0626 - hypothetical protein (RefSeq), at 778,448 to 779,833
_0626
Position (kb) 777
778 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 776.448 kb on - strand, within Sama_0622 at 776.543 kb on + strand, within Sama_0622 at 776.543 kb on + strand, within Sama_0622 at 776.543 kb on + strand, within Sama_0622 at 776.544 kb on - strand, within Sama_0622 at 776.544 kb on - strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.649 kb on + strand, within Sama_0622 at 776.650 kb on - strand, within Sama_0622 at 776.650 kb on - strand, within Sama_0622 at 776.650 kb on - strand, within Sama_0622 at 776.650 kb on - strand, within Sama_0622 at 776.679 kb on + strand, within Sama_0622 at 776.680 kb on - strand, within Sama_0622 at 776.688 kb on + strand, within Sama_0622 at 776.721 kb on - strand, within Sama_0622 at 776.763 kb on + strand, within Sama_0622 at 776.763 kb on + strand, within Sama_0622 at 776.764 kb on - strand, within Sama_0622 at 776.764 kb on - strand, within Sama_0622 at 776.764 kb on - strand, within Sama_0622 at 776.764 kb on - strand, within Sama_0622 at 776.820 kb on + strand, within Sama_0622 at 776.821 kb on - strand, within Sama_0622 at 776.821 kb on - strand, within Sama_0622 at 776.839 kb on - strand, within Sama_0622 at 776.839 kb on - strand, within Sama_0622 at 776.842 kb on + strand, within Sama_0622 at 776.963 kb on + strand, within Sama_0622 at 776.963 kb on + strand, within Sama_0622 at 776.964 kb on - strand, within Sama_0622 at 776.964 kb on - strand, within Sama_0622 at 776.964 kb on - strand, within Sama_0622 at 776.964 kb on - strand, within Sama_0622 at 777.066 kb on + strand, within Sama_0622 at 777.066 kb on + strand, within Sama_0622 at 777.067 kb on - strand, within Sama_0622 at 777.067 kb on - strand, within Sama_0622 at 777.067 kb on - strand, within Sama_0622 at 777.162 kb on + strand, within Sama_0622 at 777.162 kb on + strand, within Sama_0622 at 777.162 kb on + strand, within Sama_0622 at 777.163 kb on - strand, within Sama_0622 at 777.163 kb on - strand, within Sama_0622 at 777.184 kb on - strand, within Sama_0622 at 777.234 kb on + strand at 777.246 kb on + strand at 777.246 kb on + strand at 777.246 kb on + strand at 777.247 kb on - strand at 777.277 kb on - strand at 777.277 kb on - strand at 777.277 kb on - strand at 777.277 kb on - strand at 777.354 kb on + strand at 777.354 kb on + strand at 777.355 kb on - strand at 777.361 kb on + strand at 777.362 kb on - strand at 777.414 kb on + strand at 777.415 kb on - strand at 777.415 kb on - strand at 777.415 kb on - strand at 777.470 kb on + strand at 777.470 kb on + strand at 777.470 kb on + strand at 777.470 kb on + strand at 777.471 kb on - strand at 777.471 kb on - strand at 777.471 kb on - strand at 777.471 kb on - strand at 777.549 kb on + strand, within Sama_0623 at 777.549 kb on + strand, within Sama_0623 at 777.550 kb on - strand, within Sama_0623 at 777.568 kb on + strand, within Sama_0623 at 777.570 kb on + strand, within Sama_0623 at 777.571 kb on - strand, within Sama_0623 at 777.593 kb on + strand, within Sama_0623 at 777.593 kb on + strand, within Sama_0623 at 777.594 kb on - strand, within Sama_0623 at 777.594 kb on - strand, within Sama_0623 at 777.594 kb on - strand, within Sama_0623 at 777.594 kb on - strand, within Sama_0623 at 777.594 kb on - strand, within Sama_0623 at 777.597 kb on + strand, within Sama_0623 at 777.597 kb on + strand, within Sama_0623 at 777.621 kb on + strand, within Sama_0623 at 777.622 kb on - strand, within Sama_0623 at 777.629 kb on + strand, within Sama_0623 at 777.629 kb on + strand, within Sama_0623 at 777.629 kb on + strand, within Sama_0623 at 777.630 kb on - strand, within Sama_0623 at 777.723 kb on + strand at 777.723 kb on + strand at 777.723 kb on + strand at 777.724 kb on - strand at 777.724 kb on - strand at 777.727 kb on - strand at 777.727 kb on - strand at 777.733 kb on + strand at 777.734 kb on - strand at 777.750 kb on - strand at 777.750 kb on - strand at 777.762 kb on + strand at 777.762 kb on + strand at 777.762 kb on + strand at 777.804 kb on + strand at 777.804 kb on + strand at 777.804 kb on + strand at 777.805 kb on - strand at 777.811 kb on + strand at 777.811 kb on + strand at 777.812 kb on - strand at 777.812 kb on - strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.815 kb on + strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.816 kb on - strand at 777.833 kb on + strand at 777.833 kb on + strand at 777.834 kb on - strand at 777.835 kb on + strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.853 kb on + strand at 777.854 kb on - strand at 777.854 kb on - strand at 777.854 kb on - strand at 777.854 kb on - strand at 777.854 kb on - strand at 777.854 kb on - strand at 777.854 kb on - strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.857 kb on + strand at 777.858 kb on - strand at 777.858 kb on - strand at 777.858 kb on - strand at 777.858 kb on - strand at 777.858 kb on - strand at 777.858 kb on - strand at 777.862 kb on + strand at 777.863 kb on - strand at 777.955 kb on + strand, within Sama_0624 at 777.956 kb on - strand, within Sama_0624 at 777.975 kb on + strand, within Sama_0624 at 777.975 kb on + strand, within Sama_0624 at 777.975 kb on + strand, within Sama_0624 at 777.976 kb on - strand, within Sama_0624 at 778.023 kb on + strand, within Sama_0624 at 778.023 kb on + strand, within Sama_0624 at 778.023 kb on + strand, within Sama_0624 at 778.023 kb on + strand, within Sama_0624 at 778.023 kb on + strand, within Sama_0624 at 778.023 kb on + strand, within Sama_0624 at 778.023 kb on + strand, within Sama_0624 at 778.024 kb on - strand, within Sama_0624 at 778.024 kb on - strand, within Sama_0624 at 778.024 kb on - strand, within Sama_0624 at 778.024 kb on - strand, within Sama_0624 at 778.024 kb on - strand, within Sama_0624 at 778.097 kb on - strand at 778.097 kb on - strand at 778.137 kb on - strand at 778.148 kb on + strand at 778.152 kb on + strand at 778.465 kb on + strand at 778.466 kb on - strand at 778.483 kb on + strand at 778.491 kb on - strand at 778.498 kb on + strand at 778.499 kb on - strand at 778.499 kb on - strand at 778.520 kb on + strand at 778.565 kb on + strand at 778.565 kb on + strand at 778.566 kb on - strand at 778.566 kb on - strand at 778.566 kb on - strand at 778.649 kb on - strand, within Sama_0626 at 778.699 kb on - strand, within Sama_0626 at 778.699 kb on - strand, within Sama_0626 at 778.699 kb on - strand, within Sama_0626
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 776,448 - Sama_0622 0.43 -0.5 776,543 + Sama_0622 0.49 +1.1 776,543 + Sama_0622 0.49 -1.2 776,543 + Sama_0622 0.49 -1.8 776,544 - Sama_0622 0.49 +2.6 776,544 - Sama_0622 0.49 -0.3 776,649 + Sama_0622 0.56 +0.8 776,649 + Sama_0622 0.56 +1.1 776,649 + Sama_0622 0.56 -0.4 776,649 + Sama_0622 0.56 +2.4 776,649 + Sama_0622 0.56 +0.7 776,649 + Sama_0622 0.56 -0.6 776,649 + Sama_0622 0.56 +0.2 776,649 + Sama_0622 0.56 +0.4 776,649 + Sama_0622 0.56 -0.4 776,649 + Sama_0622 0.56 -3.0 776,649 + Sama_0622 0.56 +0.0 776,650 - Sama_0622 0.56 -0.8 776,650 - Sama_0622 0.56 -0.2 776,650 - Sama_0622 0.56 +0.8 776,650 - Sama_0622 0.56 -1.2 776,679 + Sama_0622 0.58 -1.9 776,680 - Sama_0622 0.58 +0.9 776,688 + Sama_0622 0.58 -2.5 776,721 - Sama_0622 0.60 -0.9 776,763 + Sama_0622 0.63 -0.3 776,763 + Sama_0622 0.63 +0.3 776,764 - Sama_0622 0.63 +0.4 776,764 - Sama_0622 0.63 +0.8 776,764 - Sama_0622 0.63 -1.2 776,764 - Sama_0622 0.63 -1.2 776,820 + Sama_0622 0.66 +2.2 776,821 - Sama_0622 0.66 +2.8 776,821 - Sama_0622 0.66 -1.2 776,839 - Sama_0622 0.68 -0.6 776,839 - Sama_0622 0.68 -1.3 776,842 + Sama_0622 0.68 -0.4 776,963 + Sama_0622 0.75 +0.3 776,963 + Sama_0622 0.75 +1.8 776,964 - Sama_0622 0.75 +1.4 776,964 - Sama_0622 0.75 -0.4 776,964 - Sama_0622 0.75 -0.9 776,964 - Sama_0622 0.75 -0.6 777,066 + Sama_0622 0.82 +1.8 777,066 + Sama_0622 0.82 -0.0 777,067 - Sama_0622 0.82 +0.8 777,067 - Sama_0622 0.82 -0.4 777,067 - Sama_0622 0.82 -0.6 777,162 + Sama_0622 0.88 -0.9 777,162 + Sama_0622 0.88 +0.1 777,162 + Sama_0622 0.88 +1.7 777,163 - Sama_0622 0.88 -1.2 777,163 - Sama_0622 0.88 +0.2 777,184 - Sama_0622 0.89 -1.2 777,234 + -1.4 777,246 + -2.1 777,246 + -0.5 777,246 + -2.5 777,247 - -0.9 777,277 - +0.4 777,277 - -0.4 777,277 - -2.8 777,277 - +0.8 777,354 + -1.8 777,354 + -1.1 777,355 - +0.4 777,361 + +3.0 777,362 - -0.4 777,414 + +1.2 777,415 - +0.8 777,415 - -2.5 777,415 - -2.4 777,470 + -0.6 777,470 + +1.0 777,470 + +1.0 777,470 + +0.8 777,471 - +1.4 777,471 - -1.0 777,471 - +1.7 777,471 - +2.1 777,549 + Sama_0623 0.40 +1.1 777,549 + Sama_0623 0.40 +0.3 777,550 - Sama_0623 0.40 +1.7 777,568 + Sama_0623 0.47 +2.4 777,570 + Sama_0623 0.48 +2.2 777,571 - Sama_0623 0.48 +1.7 777,593 + Sama_0623 0.57 +1.4 777,593 + Sama_0623 0.57 -0.3 777,594 - Sama_0623 0.57 +0.5 777,594 - Sama_0623 0.57 +1.9 777,594 - Sama_0623 0.57 +2.1 777,594 - Sama_0623 0.57 -0.6 777,594 - Sama_0623 0.57 -2.9 777,597 + Sama_0623 0.58 -0.0 777,597 + Sama_0623 0.58 +0.1 777,621 + Sama_0623 0.68 +1.4 777,622 - Sama_0623 0.68 +1.4 777,629 + Sama_0623 0.71 +1.8 777,629 + Sama_0623 0.71 -1.5 777,629 + Sama_0623 0.71 -2.9 777,630 - Sama_0623 0.71 -1.2 777,723 + -1.9 777,723 + -2.2 777,723 + +0.2 777,724 - -2.5 777,724 - -0.1 777,727 - +1.1 777,727 - +1.0 777,733 + -1.8 777,734 - +0.2 777,750 - +0.6 777,750 - +4.5 777,762 + +3.0 777,762 + +0.2 777,762 + -0.1 777,804 + +2.1 777,804 + +1.3 777,804 + -0.3 777,805 - +0.4 777,811 + -2.3 777,811 + -1.5 777,812 - +0.4 777,812 - -1.0 777,815 + +0.9 777,815 + +0.5 777,815 + +0.3 777,815 + +0.5 777,815 + -2.3 777,815 + -1.4 777,815 + -1.6 777,815 + +1.6 777,815 + -0.2 777,815 + -1.2 777,815 + -2.9 777,815 + +0.8 777,815 + -1.8 777,815 + -1.2 777,815 + +2.5 777,815 + -0.5 777,815 + -0.2 777,815 + -1.3 777,815 + +1.0 777,816 - +1.8 777,816 - +0.5 777,816 - +2.2 777,816 - -0.9 777,816 - +1.5 777,816 - +3.9 777,816 - +1.2 777,816 - -0.3 777,816 - +0.2 777,816 - +0.5 777,816 - +0.7 777,816 - +0.3 777,833 + +3.0 777,833 + -2.1 777,834 - +0.9 777,835 + -1.4 777,853 + +0.4 777,853 + -0.6 777,853 + +0.4 777,853 + +1.7 777,853 + -1.5 777,853 + +1.9 777,853 + -1.3 777,854 - -1.6 777,854 - +1.5 777,854 - +1.1 777,854 - +3.1 777,854 - -2.6 777,854 - +1.3 777,854 - +2.7 777,857 + +1.7 777,857 + -2.7 777,857 + +4.5 777,857 + -1.0 777,857 + -1.8 777,857 + -2.3 777,857 + +0.4 777,857 + -0.5 777,857 + -0.8 777,857 + -1.8 777,857 + -0.9 777,857 + -2.3 777,857 + +1.1 777,857 + -2.1 777,857 + +0.4 777,857 + +1.0 777,857 + +0.7 777,857 + -1.1 777,857 + +0.4 777,857 + +0.4 777,857 + +1.1 777,858 - -0.2 777,858 - +0.9 777,858 - +2.6 777,858 - +4.0 777,858 - +0.7 777,858 - -1.1 777,862 + +0.3 777,863 - -0.2 777,955 + Sama_0624 0.52 -1.7 777,956 - Sama_0624 0.52 +0.3 777,975 + Sama_0624 0.62 +1.4 777,975 + Sama_0624 0.62 -0.4 777,975 + Sama_0624 0.62 -0.2 777,976 - Sama_0624 0.62 +0.0 778,023 + Sama_0624 0.85 +2.1 778,023 + Sama_0624 0.85 -0.6 778,023 + Sama_0624 0.85 -0.9 778,023 + Sama_0624 0.85 +1.4 778,023 + Sama_0624 0.85 -2.4 778,023 + Sama_0624 0.85 +0.3 778,023 + Sama_0624 0.85 -1.3 778,024 - Sama_0624 0.86 +0.3 778,024 - Sama_0624 0.86 +1.7 778,024 - Sama_0624 0.86 -0.8 778,024 - Sama_0624 0.86 +0.7 778,024 - Sama_0624 0.86 -0.2 778,097 - -0.1 778,097 - -0.1 778,137 - -1.7 778,148 + -1.1 778,152 + -2.2 778,465 + -0.6 778,466 - -0.2 778,483 + -0.2 778,491 - -2.4 778,498 + +0.6 778,499 - +1.0 778,499 - +1.0 778,520 + +1.0 778,565 + -1.0 778,565 + -1.3 778,566 - -2.1 778,566 - -0.2 778,566 - +0.2 778,649 - Sama_0626 0.15 +0.6 778,699 - Sama_0626 0.18 +0.4 778,699 - Sama_0626 0.18 +1.2 778,699 - Sama_0626 0.18 -0.0
Or see this region's nucleotide sequence