Strain Fitness in Shewanella amazonensis SB2B around Sama_0616

Experiment: outer cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0614 and Sama_0615 are separated by 94 nucleotidesSama_0615 and Sama_0616 are separated by 120 nucleotidesSama_0616 and Sama_0617 are separated by 219 nucleotidesSama_0617 and Sama_0618 are separated by 97 nucleotides Sama_0614: Sama_0614 - hypothetical protein (RefSeq), at 767,252 to 767,887 _0614 Sama_0615: Sama_0615 - putative spermidine synthase (RefSeq), at 767,982 to 768,728 _0615 Sama_0616: Sama_0616 - leucyl aminopeptidase (RefSeq), at 768,849 to 770,375 _0616 Sama_0617: Sama_0617 - alkyl hydroperoxide reductase, C subunit (RefSeq), at 770,595 to 771,164 _0617 Sama_0618: Sama_0618 - alkyl hydroperoxide reductase, F subunit (RefSeq), at 771,262 to 772,824 _0618 Position (kb) 768 769 770 771Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 767.856 kb on + strandat 767.857 kb on - strandat 767.873 kb on + strandat 767.874 kb on - strandat 767.887 kb on + strandat 767.890 kb on + strandat 767.891 kb on - strandat 767.891 kb on - strandat 767.891 kb on - strandat 767.923 kb on - strandat 767.927 kb on + strandat 767.928 kb on - strandat 767.928 kb on - strandat 767.999 kb on + strandat 768.000 kb on - strandat 768.003 kb on + strandat 768.004 kb on - strandat 768.020 kb on + strandat 768.020 kb on + strandat 768.020 kb on + strandat 768.021 kb on - strandat 768.021 kb on - strandat 768.021 kb on - strandat 768.021 kb on - strandat 768.132 kb on + strand, within Sama_0615at 768.132 kb on + strand, within Sama_0615at 768.132 kb on + strand, within Sama_0615at 768.132 kb on + strand, within Sama_0615at 768.133 kb on - strand, within Sama_0615at 768.133 kb on - strand, within Sama_0615at 768.187 kb on + strand, within Sama_0615at 768.188 kb on - strand, within Sama_0615at 768.214 kb on + strand, within Sama_0615at 768.214 kb on + strand, within Sama_0615at 768.214 kb on + strand, within Sama_0615at 768.214 kb on + strand, within Sama_0615at 768.215 kb on - strand, within Sama_0615at 768.215 kb on - strand, within Sama_0615at 768.245 kb on + strand, within Sama_0615at 768.245 kb on + strand, within Sama_0615at 768.245 kb on + strand, within Sama_0615at 768.246 kb on - strand, within Sama_0615at 768.259 kb on + strand, within Sama_0615at 768.313 kb on + strand, within Sama_0615at 768.317 kb on + strand, within Sama_0615at 768.318 kb on - strand, within Sama_0615at 768.318 kb on - strand, within Sama_0615at 768.318 kb on - strand, within Sama_0615at 768.318 kb on - strand, within Sama_0615at 768.318 kb on - strand, within Sama_0615at 768.318 kb on - strand, within Sama_0615at 768.390 kb on - strand, within Sama_0615at 768.449 kb on + strand, within Sama_0615at 768.450 kb on - strand, within Sama_0615at 768.450 kb on - strand, within Sama_0615at 768.485 kb on + strand, within Sama_0615at 768.485 kb on + strand, within Sama_0615at 768.485 kb on + strand, within Sama_0615at 768.485 kb on + strand, within Sama_0615at 768.485 kb on + strand, within Sama_0615at 768.485 kb on + strand, within Sama_0615at 768.485 kb on + strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.486 kb on - strand, within Sama_0615at 768.567 kb on + strand, within Sama_0615at 768.567 kb on + strand, within Sama_0615at 768.567 kb on + strand, within Sama_0615at 768.567 kb on + strand, within Sama_0615at 768.567 kb on + strand, within Sama_0615at 768.567 kb on + strand, within Sama_0615at 768.568 kb on - strand, within Sama_0615at 768.601 kb on + strand, within Sama_0615at 768.601 kb on + strand, within Sama_0615at 768.602 kb on - strand, within Sama_0615at 768.602 kb on - strand, within Sama_0615at 768.602 kb on - strand, within Sama_0615at 768.602 kb on - strand, within Sama_0615at 768.613 kb on + strand, within Sama_0615at 768.629 kb on + strand, within Sama_0615at 768.758 kb on + strandat 768.758 kb on + strandat 768.758 kb on + strandat 768.759 kb on - strandat 768.779 kb on + strandat 768.779 kb on + strandat 768.780 kb on - strandat 768.790 kb on + strandat 768.801 kb on + strandat 768.801 kb on + strandat 768.801 kb on + strandat 768.812 kb on + strandat 768.813 kb on - strandat 768.829 kb on + strandat 768.830 kb on - strandat 768.832 kb on + strandat 768.832 kb on + strandat 768.832 kb on + strandat 768.832 kb on + strandat 768.832 kb on + strandat 768.833 kb on - strandat 768.833 kb on - strandat 768.863 kb on + strandat 768.864 kb on - strandat 768.864 kb on - strandat 768.895 kb on + strandat 768.896 kb on - strandat 768.896 kb on - strandat 768.920 kb on + strandat 768.974 kb on + strandat 768.974 kb on + strandat 768.974 kb on + strandat 768.975 kb on - strandat 768.975 kb on - strandat 768.975 kb on - strandat 768.975 kb on - strandat 768.986 kb on + strandat 768.987 kb on - strandat 769.054 kb on + strand, within Sama_0616at 769.054 kb on + strand, within Sama_0616at 769.055 kb on - strand, within Sama_0616at 769.110 kb on - strand, within Sama_0616at 769.176 kb on - strand, within Sama_0616at 769.176 kb on - strand, within Sama_0616at 769.230 kb on - strand, within Sama_0616at 769.230 kb on - strand, within Sama_0616at 769.320 kb on + strand, within Sama_0616at 769.321 kb on - strand, within Sama_0616at 769.321 kb on - strand, within Sama_0616at 769.322 kb on + strand, within Sama_0616at 769.323 kb on - strand, within Sama_0616at 769.323 kb on - strand, within Sama_0616at 769.328 kb on + strand, within Sama_0616at 769.328 kb on + strand, within Sama_0616at 769.328 kb on + strand, within Sama_0616at 769.328 kb on + strand, within Sama_0616at 769.328 kb on + strand, within Sama_0616at 769.328 kb on + strand, within Sama_0616at 769.329 kb on - strand, within Sama_0616at 769.329 kb on - strand, within Sama_0616at 769.392 kb on + strand, within Sama_0616at 769.392 kb on + strand, within Sama_0616at 769.393 kb on - strand, within Sama_0616at 769.393 kb on - strand, within Sama_0616at 769.393 kb on - strand, within Sama_0616at 769.463 kb on + strand, within Sama_0616at 769.464 kb on - strand, within Sama_0616at 769.496 kb on + strand, within Sama_0616at 769.496 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.671 kb on - strand, within Sama_0616at 769.689 kb on + strand, within Sama_0616at 769.950 kb on + strand, within Sama_0616at 769.950 kb on + strand, within Sama_0616at 769.966 kb on - strand, within Sama_0616at 770.034 kb on + strand, within Sama_0616at 770.034 kb on + strand, within Sama_0616at 770.034 kb on + strand, within Sama_0616at 770.035 kb on - strand, within Sama_0616at 770.136 kb on + strand, within Sama_0616at 770.136 kb on + strand, within Sama_0616at 770.137 kb on - strand, within Sama_0616at 770.265 kb on - strandat 770.281 kb on + strandat 770.339 kb on - strandat 770.342 kb on + strandat 770.342 kb on + strandat 770.342 kb on + strandat 770.343 kb on - strandat 770.512 kb on + strandat 770.512 kb on + strandat 770.512 kb on + strandat 770.512 kb on + strandat 770.513 kb on - strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.516 kb on - strandat 770.516 kb on - strandat 770.516 kb on - strandat 770.536 kb on + strandat 770.536 kb on + strandat 770.536 kb on + strandat 770.536 kb on + strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.579 kb on + strandat 770.579 kb on + strandat 770.581 kb on + strandat 770.581 kb on + strandat 770.581 kb on + strandat 770.686 kb on + strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.738 kb on - strand, within Sama_0617at 770.738 kb on - strand, within Sama_0617at 770.772 kb on + strand, within Sama_0617at 770.773 kb on - strand, within Sama_0617at 770.773 kb on - strand, within Sama_0617at 770.805 kb on + strand, within Sama_0617at 770.805 kb on + strand, within Sama_0617at 770.907 kb on - strand, within Sama_0617at 770.919 kb on - strand, within Sama_0617at 770.963 kb on + strand, within Sama_0617at 770.964 kb on - strand, within Sama_0617at 770.964 kb on - strand, within Sama_0617at 770.964 kb on - strand, within Sama_0617at 770.971 kb on + strand, within Sama_0617at 770.992 kb on + strand, within Sama_0617at 770.992 kb on + strand, within Sama_0617at 770.992 kb on + strand, within Sama_0617at 770.993 kb on - strand, within Sama_0617at 771.051 kb on - strand, within Sama_0617at 771.069 kb on + strand, within Sama_0617at 771.070 kb on - strand, within Sama_0617at 771.070 kb on - strand, within Sama_0617at 771.077 kb on + strand, within Sama_0617at 771.078 kb on - strand, within Sama_0617at 771.162 kb on + strandat 771.232 kb on + strandat 771.233 kb on - strandat 771.236 kb on + strandat 771.236 kb on + strandat 771.237 kb on - strandat 771.237 kb on - strandat 771.267 kb on - strandat 771.291 kb on + strandat 771.291 kb on + strandat 771.292 kb on - strandat 771.292 kb on - strandat 771.298 kb on + strandat 771.298 kb on + strandat 771.299 kb on - strandat 771.299 kb on - strandat 771.299 kb on - strandat 771.299 kb on - strandat 771.299 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay
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767,856 + -1.6
767,857 - -0.9
767,873 + +0.9
767,874 - -0.0
767,887 + -0.5
767,890 + +1.3
767,891 - -0.4
767,891 - -2.6
767,891 - +0.9
767,923 - -2.4
767,927 + -0.6
767,928 - -0.4
767,928 - +2.9
767,999 + -1.6
768,000 - -1.4
768,003 + -0.9
768,004 - -0.9
768,020 + +1.1
768,020 + -0.9
768,020 + -1.8
768,021 - -1.6
768,021 - +1.0
768,021 - -0.3
768,021 - -2.6
768,132 + Sama_0615 0.20 -1.4
768,132 + Sama_0615 0.20 +0.5
768,132 + Sama_0615 0.20 -0.1
768,132 + Sama_0615 0.20 +1.1
768,133 - Sama_0615 0.20 +0.8
768,133 - Sama_0615 0.20 -1.1
768,187 + Sama_0615 0.27 +3.2
768,188 - Sama_0615 0.28 +2.3
768,214 + Sama_0615 0.31 -0.2
768,214 + Sama_0615 0.31 -0.8
768,214 + Sama_0615 0.31 -1.1
768,214 + Sama_0615 0.31 -0.6
768,215 - Sama_0615 0.31 +1.6
768,215 - Sama_0615 0.31 -2.7
768,245 + Sama_0615 0.35 -2.6
768,245 + Sama_0615 0.35 -0.3
768,245 + Sama_0615 0.35 -0.9
768,246 - Sama_0615 0.35 -1.4
768,259 + Sama_0615 0.37 +0.8
768,313 + Sama_0615 0.44 +0.6
768,317 + Sama_0615 0.45 +1.7
768,318 - Sama_0615 0.45 -0.6
768,318 - Sama_0615 0.45 +0.9
768,318 - Sama_0615 0.45 +2.2
768,318 - Sama_0615 0.45 +0.6
768,318 - Sama_0615 0.45 -0.0
768,318 - Sama_0615 0.45 +2.1
768,390 - Sama_0615 0.55 -1.4
768,449 + Sama_0615 0.63 -0.2
768,450 - Sama_0615 0.63 -0.0
768,450 - Sama_0615 0.63 +1.4
768,485 + Sama_0615 0.67 -0.3
768,485 + Sama_0615 0.67 -0.3
768,485 + Sama_0615 0.67 -0.9
768,485 + Sama_0615 0.67 -0.6
768,485 + Sama_0615 0.67 +0.4
768,485 + Sama_0615 0.67 +0.1
768,485 + Sama_0615 0.67 -2.3
768,486 - Sama_0615 0.67 +0.4
768,486 - Sama_0615 0.67 -1.8
768,486 - Sama_0615 0.67 -0.2
768,486 - Sama_0615 0.67 -1.0
768,486 - Sama_0615 0.67 +0.0
768,486 - Sama_0615 0.67 +0.6
768,486 - Sama_0615 0.67 +3.0
768,486 - Sama_0615 0.67 -2.3
768,567 + Sama_0615 0.78 +1.2
768,567 + Sama_0615 0.78 -0.5
768,567 + Sama_0615 0.78 -1.9
768,567 + Sama_0615 0.78 +0.8
768,567 + Sama_0615 0.78 +0.1
768,567 + Sama_0615 0.78 -1.6
768,568 - Sama_0615 0.78 +1.0
768,601 + Sama_0615 0.83 +0.9
768,601 + Sama_0615 0.83 -0.6
768,602 - Sama_0615 0.83 -0.9
768,602 - Sama_0615 0.83 -0.8
768,602 - Sama_0615 0.83 -0.3
768,602 - Sama_0615 0.83 -0.9
768,613 + Sama_0615 0.84 +2.0
768,629 + Sama_0615 0.87 +0.4
768,758 + -1.2
768,758 + -0.9
768,758 + +0.4
768,759 - -1.4
768,779 + -0.2
768,779 + -0.6
768,780 - -0.3
768,790 + +0.1
768,801 + +0.6
768,801 + -0.9
768,801 + -1.6
768,812 + +1.8
768,813 - -0.5
768,829 + +0.6
768,830 - -0.1
768,832 + -0.9
768,832 + +0.3
768,832 + -1.3
768,832 + +3.3
768,832 + -4.2
768,833 - -0.9
768,833 - -0.4
768,863 + -2.2
768,864 - -1.2
768,864 - -1.6
768,895 + -1.8
768,896 - +2.3
768,896 - +1.8
768,920 + +0.8
768,974 + +1.8
768,974 + +0.3
768,974 + -0.9
768,975 - +0.7
768,975 - +0.6
768,975 - -0.3
768,975 - -2.2
768,986 + +0.8
768,987 - +0.3
769,054 + Sama_0616 0.13 -1.2
769,054 + Sama_0616 0.13 +0.2
769,055 - Sama_0616 0.13 +0.2
769,110 - Sama_0616 0.17 +1.8
769,176 - Sama_0616 0.21 +0.8
769,176 - Sama_0616 0.21 -0.6
769,230 - Sama_0616 0.25 +0.3
769,230 - Sama_0616 0.25 -1.1
769,320 + Sama_0616 0.31 -1.7
769,321 - Sama_0616 0.31 -0.2
769,321 - Sama_0616 0.31 +2.0
769,322 + Sama_0616 0.31 -0.9
769,323 - Sama_0616 0.31 -1.4
769,323 - Sama_0616 0.31 -0.4
769,328 + Sama_0616 0.31 -1.8
769,328 + Sama_0616 0.31 +0.6
769,328 + Sama_0616 0.31 -2.1
769,328 + Sama_0616 0.31 -0.4
769,328 + Sama_0616 0.31 -1.5
769,328 + Sama_0616 0.31 -1.6
769,329 - Sama_0616 0.31 -1.1
769,329 - Sama_0616 0.31 +0.1
769,392 + Sama_0616 0.36 +1.4
769,392 + Sama_0616 0.36 -2.6
769,393 - Sama_0616 0.36 -1.4
769,393 - Sama_0616 0.36 +1.7
769,393 - Sama_0616 0.36 +1.3
769,463 + Sama_0616 0.40 -0.5
769,464 - Sama_0616 0.40 -1.4
769,496 + Sama_0616 0.42 -1.0
769,496 + Sama_0616 0.42 -1.8
769,670 + Sama_0616 0.54 -1.2
769,670 + Sama_0616 0.54 +0.5
769,670 + Sama_0616 0.54 -1.4
769,670 + Sama_0616 0.54 -0.1
769,670 + Sama_0616 0.54 +1.8
769,671 - Sama_0616 0.54 -1.8
769,689 + Sama_0616 0.55 +1.5
769,950 + Sama_0616 0.72 -1.5
769,950 + Sama_0616 0.72 -2.7
769,966 - Sama_0616 0.73 -0.3
770,034 + Sama_0616 0.78 -0.8
770,034 + Sama_0616 0.78 -0.7
770,034 + Sama_0616 0.78 -0.8
770,035 - Sama_0616 0.78 +0.9
770,136 + Sama_0616 0.84 -0.1
770,136 + Sama_0616 0.84 -1.2
770,137 - Sama_0616 0.84 -2.2
770,265 - -0.4
770,281 + +0.9
770,339 - -1.2
770,342 + +1.5
770,342 + +0.4
770,342 + +1.0
770,343 - -0.5
770,512 + -2.5
770,512 + +0.0
770,512 + -0.6
770,512 + -2.6
770,513 - -0.5
770,515 + +0.2
770,515 + -1.6
770,515 + -0.9
770,515 + +2.5
770,515 + -0.9
770,515 + +0.8
770,516 - +0.4
770,516 - -1.4
770,516 - -2.2
770,536 + +0.4
770,536 + -0.9
770,536 + +1.0
770,536 + -0.2
770,537 - -0.3
770,537 - +1.9
770,537 - +1.2
770,537 - -1.2
770,537 - -1.4
770,537 - -1.4
770,537 - +0.0
770,537 - -0.9
770,537 - -1.8
770,579 + -1.4
770,579 + -2.2
770,581 + -1.3
770,581 + -0.9
770,581 + -1.6
770,686 + Sama_0617 0.16 -1.2
770,687 - Sama_0617 0.16 -0.2
770,687 - Sama_0617 0.16 -2.3
770,687 - Sama_0617 0.16 -0.6
770,687 - Sama_0617 0.16 +1.4
770,738 - Sama_0617 0.25 -0.6
770,738 - Sama_0617 0.25 -2.3
770,772 + Sama_0617 0.31 +2.3
770,773 - Sama_0617 0.31 -1.9
770,773 - Sama_0617 0.31 +0.9
770,805 + Sama_0617 0.37 +0.9
770,805 + Sama_0617 0.37 +0.5
770,907 - Sama_0617 0.55 -1.1
770,919 - Sama_0617 0.57 -1.3
770,963 + Sama_0617 0.65 +0.0
770,964 - Sama_0617 0.65 +1.5
770,964 - Sama_0617 0.65 -1.2
770,964 - Sama_0617 0.65 +2.3
770,971 + Sama_0617 0.66 -0.8
770,992 + Sama_0617 0.70 -0.0
770,992 + Sama_0617 0.70 +1.2
770,992 + Sama_0617 0.70 +0.6
770,993 - Sama_0617 0.70 +1.4
771,051 - Sama_0617 0.80 +0.4
771,069 + Sama_0617 0.83 +1.4
771,070 - Sama_0617 0.83 +2.4
771,070 - Sama_0617 0.83 +0.5
771,077 + Sama_0617 0.85 -0.8
771,078 - Sama_0617 0.85 -3.3
771,162 + -0.0
771,232 + -1.2
771,233 - -1.4
771,236 + +1.7
771,236 + -0.6
771,237 - -0.7
771,237 - +1.4
771,267 - -1.2
771,291 + +1.4
771,291 + -1.0
771,292 - -0.8
771,292 - -1.8
771,298 + +1.2
771,298 + +0.6
771,299 - +0.6
771,299 - -0.2
771,299 - -0.1
771,299 - +0.4
771,299 - -1.0

Or see this region's nucleotide sequence