Strain Fitness in Shewanella amazonensis SB2B around Sama_0370

Experiment: outer cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	outer cut, LB soft agar motility assay
446,985	+		Sama_0369	0.45	-1.7
446,986	-		Sama_0369	0.45	+0.6
446,986	-		Sama_0369	0.45	+1.5
447,056	-		Sama_0369	0.49	+2.2
447,062	+		Sama_0369	0.50	-1.8
447,063	-		Sama_0369	0.50	-0.1
447,063	-		Sama_0369	0.50	-1.4
447,063	-		Sama_0369	0.50	+1.5
447,063	-		Sama_0369	0.50	-0.2
447,063	-		Sama_0369	0.50	-3.9
447,094	+		Sama_0369	0.52	-1.7
447,094	+		Sama_0369	0.52	-1.5
447,094	+		Sama_0369	0.52	-1.3
447,095	-		Sama_0369	0.52	-2.5
447,098	+		Sama_0369	0.52	-1.7
447,099	-		Sama_0369	0.52	-1.2
447,140	+		Sama_0369	0.54	-3.0
447,198	-		Sama_0369	0.58	+0.1
447,198	-		Sama_0369	0.58	+0.4
447,198	-		Sama_0369	0.58	-0.1
447,198	-		Sama_0369	0.58	+0.1
447,265	+		Sama_0369	0.62	-3.0
447,294	+		Sama_0369	0.63	-0.8
447,295	-		Sama_0369	0.63	-1.7
447,331	+		Sama_0369	0.65	-3.3
447,331	+		Sama_0369	0.65	-3.5
447,332	-		Sama_0369	0.66	+0.6
447,332	-		Sama_0369	0.66	-1.1
447,332	-		Sama_0369	0.66	+2.6
447,355	+		Sama_0369	0.67	-2.9
447,355	+		Sama_0369	0.67	-1.7
447,356	-		Sama_0369	0.67	-2.0
447,356	-		Sama_0369	0.67	-0.1
447,357	+		Sama_0369	0.67	-2.2
447,357	+		Sama_0369	0.67	-1.8
447,357	+		Sama_0369	0.67	-2.0
447,357	+		Sama_0369	0.67	-2.8
447,357	+		Sama_0369	0.67	-3.9
447,357	+		Sama_0369	0.67	+0.9
447,357	+		Sama_0369	0.67	-2.2
447,358	-		Sama_0369	0.67	+0.6
447,358	-		Sama_0369	0.67	-1.5
447,358	-		Sama_0369	0.67	-0.5
447,358	-		Sama_0369	0.67	-0.0
447,358	-		Sama_0369	0.67	+0.9
447,358	-		Sama_0369	0.67	-1.5
447,358	-		Sama_0369	0.67	+2.3
447,358	-		Sama_0369	0.67	-1.4
447,358	-		Sama_0369	0.67	-1.8
447,358	-		Sama_0369	0.67	-0.8
447,361	+		Sama_0369	0.67	-2.8
447,361	+		Sama_0369	0.67	-0.5
447,361	+		Sama_0369	0.67	-0.5
447,362	-		Sama_0369	0.67	-0.8
447,362	-		Sama_0369	0.67	-1.5
447,362	-		Sama_0369	0.67	-0.3
447,362	-		Sama_0369	0.67	+0.7
447,365	+		Sama_0369	0.67	-2.8
447,365	+		Sama_0369	0.67	-0.8
447,365	+		Sama_0369	0.67	-1.1
447,365	+		Sama_0369	0.67	-2.0
447,365	+		Sama_0369	0.67	-2.5
447,365	+		Sama_0369	0.67	-0.5
447,365	+		Sama_0369	0.67	-2.5
447,365	+		Sama_0369	0.67	-2.7
447,366	-		Sama_0369	0.68	-1.3
447,366	-		Sama_0369	0.68	+0.9
447,366	-		Sama_0369	0.68	+2.3
447,391	+		Sama_0369	0.69	-1.3
447,392	-		Sama_0369	0.69	-2.1
447,421	+		Sama_0369	0.71	-0.1
447,422	-		Sama_0369	0.71	-1.1
447,517	+		Sama_0369	0.76	-1.7
447,517	+		Sama_0369	0.76	-2.4
447,536	-		Sama_0369	0.78	+0.2
447,536	-		Sama_0369	0.78	+1.1
447,604	+		Sama_0369	0.81	-2.2
447,604	+		Sama_0369	0.81	-3.0
447,604	+		Sama_0369	0.81	-2.5
447,604	+		Sama_0369	0.81	-1.5
447,604	+		Sama_0369	0.81	-2.3
447,604	+		Sama_0369	0.81	-3.4
447,604	+		Sama_0369	0.81	-1.6
447,604	+		Sama_0369	0.81	-0.7
447,604	+		Sama_0369	0.81	-0.1
447,605	-		Sama_0369	0.82	-0.1
447,605	-		Sama_0369	0.82	-1.4
447,605	-		Sama_0369	0.82	-1.4
447,605	-		Sama_0369	0.82	-2.6
447,605	-		Sama_0369	0.82	+2.8
447,605	-		Sama_0369	0.82	+1.2
447,605	-		Sama_0369	0.82	+2.5
447,605	-		Sama_0369	0.82	+2.2
447,605	-		Sama_0369	0.82	-1.1
447,608	+		Sama_0369	0.82	-0.5
447,608	+		Sama_0369	0.82	-0.8
447,608	+		Sama_0369	0.82	-1.7
447,608	+		Sama_0369	0.82	-1.8
447,608	+		Sama_0369	0.82	-1.0
447,608	+		Sama_0369	0.82	-0.5
447,608	+		Sama_0369	0.82	-1.3
447,608	+		Sama_0369	0.82	-2.8
447,608	+		Sama_0369	0.82	+0.5
447,608	+		Sama_0369	0.82	-2.5
447,608	+		Sama_0369	0.82	-2.1
447,608	+		Sama_0369	0.82	-2.3
447,608	+		Sama_0369	0.82	-0.8
447,608	+		Sama_0369	0.82	-2.1
447,608	+		Sama_0369	0.82	-2.4
447,608	+		Sama_0369	0.82	-2.0
447,608	+		Sama_0369	0.82	-3.0
447,608	+		Sama_0369	0.82	+0.5
447,609	-		Sama_0369	0.82	-2.5
447,609	-		Sama_0369	0.82	+0.3
447,609	-		Sama_0369	0.82	+2.1
447,609	-		Sama_0369	0.82	-3.2
447,609	-		Sama_0369	0.82	-0.5
447,609	-		Sama_0369	0.82	+1.2
447,609	-		Sama_0369	0.82	+1.0
447,609	-		Sama_0369	0.82	+2.7
447,609	-		Sama_0369	0.82	-2.1
447,609	-		Sama_0369	0.82	+1.4
447,609	-		Sama_0369	0.82	+2.1
447,609	-		Sama_0369	0.82	-2.0
447,609	-		Sama_0369	0.82	-1.5
447,609	-		Sama_0369	0.82	+1.1
447,609	-		Sama_0369	0.82	+1.2
447,609	-		Sama_0369	0.82	-2.0
447,609	-		Sama_0369	0.82	+1.0
447,609	-		Sama_0369	0.82	-0.7
447,609	-		Sama_0369	0.82	+1.8
447,610	+		Sama_0369	0.82	-1.1
447,610	+		Sama_0369	0.82	-2.6
447,610	+		Sama_0369	0.82	-4.2
447,610	+		Sama_0369	0.82	-1.1
447,610	+		Sama_0369	0.82	-1.1
447,610	+		Sama_0369	0.82	-1.7
447,610	+		Sama_0369	0.82	-1.8
447,610	+		Sama_0369	0.82	-0.8
447,610	+		Sama_0369	0.82	-2.3
447,611	-		Sama_0369	0.82	+1.2
447,611	-		Sama_0369	0.82	-1.5
447,611	-		Sama_0369	0.82	-0.5
447,611	-		Sama_0369	0.82	+0.6
447,611	-		Sama_0369	0.82	+2.5
447,612	+		Sama_0369	0.82	-1.3
447,612	+		Sama_0369	0.82	-2.5
447,612	+		Sama_0369	0.82	-2.0
447,612	+		Sama_0369	0.82	-0.1
447,612	+		Sama_0369	0.82	-0.1
447,612	+		Sama_0369	0.82	-3.0
447,612	+		Sama_0369	0.82	+0.5
447,612	+		Sama_0369	0.82	-1.1
447,612	+		Sama_0369	0.82	-3.3
447,612	+		Sama_0369	0.82	-4.0
447,612	+		Sama_0369	0.82	-0.5
447,612	+		Sama_0369	0.82	-1.5
447,612	+		Sama_0369	0.82	-1.1
447,612	+		Sama_0369	0.82	-3.4
447,612	+		Sama_0369	0.82	-2.7
447,612	+		Sama_0369	0.82	+0.5
447,613	-		Sama_0369	0.82	-1.3
447,613	-		Sama_0369	0.82	-0.2
447,613	-		Sama_0369	0.82	+1.5
447,613	-		Sama_0369	0.82	-1.5
447,613	-		Sama_0369	0.82	-2.4
447,613	-		Sama_0369	0.82	-1.5
447,613	-		Sama_0369	0.82	-2.0
447,613	-		Sama_0369	0.82	-0.5
447,613	-		Sama_0369	0.82	-0.4
447,631	+		Sama_0369	0.83	-0.1
447,631	+		Sama_0369	0.83	+0.5
447,736	-		Sama_0369	0.89	+1.0
447,744	+		Sama_0369	0.90	-1.5
447,745	-		Sama_0369	0.90	-1.1
447,773	+				-1.1
447,773	+				-1.3
447,773	+				-1.8
447,773	+				-3.4
447,773	+				-3.3
447,773	+				-0.8
447,773	+				-2.7
447,774	-				-3.1
447,774	-				-2.3
447,774	-				+2.2
447,776	+				-2.2
447,776	+				+0.5
447,776	+				-2.9
447,777	-				-3.3
447,777	-				+0.3
447,777	-				+1.2
447,777	-				-1.6
447,777	-				+1.0
447,777	-				-0.4
447,777	-				-0.8
447,781	+				-0.1
447,781	+				-1.1
447,782	-				-0.1
447,782	-				-0.0
447,782	-				-2.7
447,782	-				+0.4
447,782	-				-1.5
447,796	+				+1.5
447,797	-				+1.1
447,797	-				-2.2
447,833	+				-0.7
447,871	+				-0.7
447,871	+				-2.2
447,871	+				-1.3
447,872	-				-3.3
447,872	-				+2.4
447,896	+				-2.3
447,896	+				-1.5
447,896	+				-3.0
447,897	-				-1.1
447,897	-				+1.7
447,897	-				+1.5
447,920	+				-3.8
447,921	-				-0.3
447,921	-				-0.5
447,921	-				+0.6
447,921	-				+0.8
447,931	+				-3.4
447,932	-				+1.7
447,964	-				-0.6
447,974	+				-2.8
447,993	+				-2.0
447,993	+				-3.0
447,994	-				+0.7
447,994	-				-0.8
447,999	+				-0.1
447,999	+				-0.8
447,999	+				-2.6
448,000	-				-0.8
448,000	-				-0.6
448,020	+				-2.1
448,020	+				-2.2
448,049	-		Sama_0370	0.16	-1.8
448,049	-		Sama_0370	0.16	-0.1
448,055	+		Sama_0370	0.17	-1.8
448,055	+		Sama_0370	0.17	-1.7
448,055	+		Sama_0370	0.17	-1.5
448,055	+		Sama_0370	0.17	-2.3
448,055	+		Sama_0370	0.17	-1.3
448,055	+		Sama_0370	0.17	-3.2
448,055	+		Sama_0370	0.17	-2.0
448,056	-		Sama_0370	0.18	-2.0
448,056	-		Sama_0370	0.18	-0.2
448,056	-		Sama_0370	0.18	+0.2
448,056	-		Sama_0370	0.18	+0.5
448,056	-		Sama_0370	0.18	-2.0
448,056	-		Sama_0370	0.18	+2.5
448,061	+		Sama_0370	0.19	-2.0
448,062	-		Sama_0370	0.19	-2.7
448,062	-		Sama_0370	0.19	-2.8
448,062	-		Sama_0370	0.19	-1.0
448,062	-		Sama_0370	0.19	-1.0
448,062	-		Sama_0370	0.19	-1.0
448,062	-		Sama_0370	0.19	-1.5
448,110	+		Sama_0370	0.29	-1.7
448,111	-		Sama_0370	0.29	+1.2
448,111	-		Sama_0370	0.29	-0.7
448,162	+		Sama_0370	0.40	-1.8
448,163	-		Sama_0370	0.40	+0.1
448,163	-		Sama_0370	0.40	-0.1
448,163	-		Sama_0370	0.40	-0.5
448,163	-		Sama_0370	0.40	+0.2
448,163	-		Sama_0370	0.40	-1.2
448,184	-		Sama_0370	0.45	-1.8
448,184	-		Sama_0370	0.45	-1.8
448,192	+		Sama_0370	0.46	-2.8
448,193	-		Sama_0370	0.46	-0.5
448,195	+		Sama_0370	0.47	-2.0
448,195	+		Sama_0370	0.47	+0.5
448,195	+		Sama_0370	0.47	-2.6
448,196	-		Sama_0370	0.47	-2.3
448,196	-		Sama_0370	0.47	-1.7
448,196	-		Sama_0370	0.47	+0.9
448,196	-		Sama_0370	0.47	-1.5
448,196	-		Sama_0370	0.47	-1.7
448,200	+		Sama_0370	0.48	-3.3
448,200	+		Sama_0370	0.48	-2.5
448,200	+		Sama_0370	0.48	-2.7
448,200	+		Sama_0370	0.48	-1.5
448,200	+		Sama_0370	0.48	-0.1
448,200	+		Sama_0370	0.48	-3.0
448,200	+		Sama_0370	0.48	-1.1
448,201	-		Sama_0370	0.48	-2.7
448,201	-		Sama_0370	0.48	-1.7
448,201	-		Sama_0370	0.48	-0.8
448,201	-		Sama_0370	0.48	-2.7
448,201	-		Sama_0370	0.48	-2.3
448,201	-		Sama_0370	0.48	-0.9
448,201	-		Sama_0370	0.48	+0.4
448,201	-		Sama_0370	0.48	-0.4
448,201	-		Sama_0370	0.48	-1.3
448,201	-		Sama_0370	0.48	-2.1
448,219	-		Sama_0370	0.52	-0.8
448,219	-		Sama_0370	0.52	+1.8
448,245	+		Sama_0370	0.57	-3.0
448,245	+		Sama_0370	0.57	-2.9
448,246	-		Sama_0370	0.58	-2.2
448,246	-		Sama_0370	0.58	+0.5
448,246	-		Sama_0370	0.58	-2.3
448,246	-		Sama_0370	0.58	+0.9
448,246	-		Sama_0370	0.58	-1.1
448,246	-		Sama_0370	0.58	+0.9
448,246	-		Sama_0370	0.58	-3.6
448,246	-		Sama_0370	0.58	+0.2
448,246	-		Sama_0370	0.58	+1.9
448,246	-		Sama_0370	0.58	+0.8
448,270	+		Sama_0370	0.63	-1.5
448,271	-		Sama_0370	0.63	-0.1
448,271	-		Sama_0370	0.63	-3.0
448,271	-		Sama_0370	0.63	-0.7
448,331	+		Sama_0370	0.76	-1.7
448,332	-		Sama_0370	0.76	-0.9
448,341	-		Sama_0370	0.78	-1.5
448,369	-		Sama_0370	0.84	-3.0
448,381	+		Sama_0370	0.86	-2.6
448,382	-		Sama_0370	0.86	-2.7
448,382	-		Sama_0370	0.86	-1.5
448,382	-		Sama_0370	0.86	+0.8
448,384	+		Sama_0370	0.87	-0.5
448,385	-		Sama_0370	0.87	-0.2
448,385	-		Sama_0370	0.87	+1.3
448,385	-		Sama_0370	0.87	-0.7
448,438	-				-0.3
448,460	+				-0.5
448,460	+				-1.1
448,460	+				-2.8
448,461	-				-3.2
448,466	+				+1.9
448,466	+				+0.5
448,466	+				-2.7
448,466	+				-3.2
448,467	-				-0.5
448,467	-				+0.4
448,471	-				+0.1
448,518	+				-2.6
448,518	+				-1.8
448,519	-				-1.8
448,519	-				-3.7
448,524	+				-1.1
448,524	+				-1.5
448,524	+				-2.7
448,525	-				-2.6
448,525	-				+1.9
448,536	+				+0.5
448,536	+				+0.5
448,536	+				-1.1
448,537	-				+2.3
448,550	+				-2.3
448,551	-				+2.2
448,551	-				-1.3
448,564	+				-2.0
448,565	-				-1.5
448,590	+				-3.0
448,590	+				-3.3
448,591	-				-0.8
448,591	-				-2.2
448,591	-				-2.9
448,605	+				-2.0
448,605	+				-1.8
448,606	-				-0.5
448,606	-				+0.4
448,671	+				-1.1
448,672	-				+0.2
448,678	+				-2.0
448,679	-				-0.8
448,688	-				-1.1
448,694	-				-2.3
448,702	+				+0.9
448,703	-				+0.5
448,717	+				-0.5
448,718	-				-0.4
448,718	-				-1.3
448,721	+				-2.5
448,722	-				-0.7
448,722	-				-2.8
448,749	-				-2.1
448,749	-				+0.6
448,752	-				+0.3
448,752	-				+1.1
448,765	-				+0.1
448,807	+				-0.1
448,807	+				-0.7
448,808	-				+0.4
448,834	+				-2.1
448,835	-				-0.8
448,845	+				-1.7
448,879	-				+1.8
448,880	+				-2.2
448,880	+				-2.1
448,880	+				-2.3
448,892	+				-3.0
448,893	-				+0.4
448,933	+				+1.1
448,992	+				-2.3
448,993	-				-2.0
448,993	-				-1.7
449,024	+				-2.0
449,024	+				-0.8
449,024	+				-3.2
449,025	-				-0.1
449,025	-				+0.9
449,025	-				+0.6
449,025	-				+0.2
449,038	+				+1.9
449,038	+				-0.5
449,038	+				-2.8
449,038	+				+0.5
449,038	+				-2.5
449,038	+				-2.9
449,039	-				-2.5
449,039	-				-1.3
449,039	-				-2.0
449,039	-				+1.0
449,063	+				-0.7
449,064	-				+0.3
449,088	+				-0.8
449,089	-				-1.8
449,089	-				+2.1
449,089	-				-2.2
449,089	-				-1.8
449,094	-				+0.2
449,101	-				-0.0
449,110	-				+0.2
449,128	-				-1.1
449,166	+				-0.0
449,167	-				+2.0
449,167	-				-0.9
449,167	-				-1.1
449,167	-				+2.0
449,167	-				+0.1
449,167	-				-1.6
449,174	+				-0.3
449,192	+				-3.4
449,193	-				+0.2
449,233	+				-1.1
449,234	-				+2.2
449,234	-				+1.6
449,253	+				-3.6
449,253	+				+0.2
449,253	+				+0.7
449,253	+				-2.1
449,253	+				-2.4
449,254	-				-2.3
449,254	-				-1.3
449,254	-				+1.3
449,254	-				-1.5
449,254	-				-1.3
449,292	+				+0.5
449,292	+				-1.9
449,338	+				-2.5
449,399	+				-1.1
449,400	-				+0.0
449,400	-				+1.0
449,416	+				-1.1
449,417	-				+3.3
449,421	+				+1.6
449,421	+				-2.2
449,421	+				+0.3
449,421	+				-1.1
449,422	-				+1.2
449,422	-				-0.5
449,422	-				-0.3
449,445	+				-2.3