Experiment: outer cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0312 and Sama_0313 are separated by 387 nucleotides Sama_0313 and Sama_0314 are separated by 169 nucleotides Sama_0314 and Sama_0315 are separated by 546 nucleotides
Sama_0312: Sama_0312 - hypothetical protein (RefSeq), at 377,512 to 378,216
_0312
Sama_0313: Sama_0313 - DNA topoisomerase I (RefSeq), at 378,604 to 379,386
_0313
Sama_0314: Sama_0314 - hypothetical protein (RefSeq), at 379,556 to 379,834
_0314
Sama_0315: Sama_0315 - hypothetical protein (RefSeq), at 380,381 to 380,974
_0315
Position (kb) 378
379
380 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 377.612 kb on - strand, within Sama_0312 at 377.615 kb on - strand, within Sama_0312 at 377.630 kb on - strand, within Sama_0312 at 377.631 kb on + strand, within Sama_0312 at 377.632 kb on - strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.633 kb on + strand, within Sama_0312 at 377.634 kb on - strand, within Sama_0312 at 377.634 kb on - strand, within Sama_0312 at 377.634 kb on - strand, within Sama_0312 at 377.699 kb on + strand, within Sama_0312 at 377.724 kb on - strand, within Sama_0312 at 377.767 kb on - strand, within Sama_0312 at 377.796 kb on + strand, within Sama_0312 at 377.803 kb on - strand, within Sama_0312 at 377.803 kb on - strand, within Sama_0312 at 377.806 kb on - strand, within Sama_0312 at 377.835 kb on + strand, within Sama_0312 at 377.858 kb on - strand, within Sama_0312 at 377.893 kb on - strand, within Sama_0312 at 377.915 kb on + strand, within Sama_0312 at 377.916 kb on - strand, within Sama_0312 at 378.036 kb on - strand, within Sama_0312 at 378.036 kb on - strand, within Sama_0312 at 378.036 kb on - strand, within Sama_0312 at 378.040 kb on - strand, within Sama_0312 at 378.084 kb on + strand, within Sama_0312 at 378.106 kb on + strand, within Sama_0312 at 378.173 kb on + strand at 378.174 kb on - strand at 378.190 kb on + strand at 378.224 kb on + strand at 378.235 kb on + strand at 378.236 kb on - strand at 378.236 kb on - strand at 378.237 kb on + strand at 378.237 kb on + strand at 378.241 kb on - strand at 378.241 kb on - strand at 378.253 kb on + strand at 378.311 kb on - strand at 378.311 kb on - strand at 378.324 kb on + strand at 378.324 kb on + strand at 378.349 kb on + strand at 378.349 kb on + strand at 378.350 kb on - strand at 378.363 kb on + strand at 378.364 kb on - strand at 378.369 kb on + strand at 378.369 kb on + strand at 378.370 kb on - strand at 378.370 kb on - strand at 378.382 kb on - strand at 378.401 kb on - strand at 378.432 kb on + strand at 378.432 kb on + strand at 378.433 kb on - strand at 378.433 kb on - strand at 378.485 kb on + strand at 378.485 kb on + strand at 378.486 kb on - strand at 378.486 kb on - strand at 378.500 kb on + strand at 378.500 kb on + strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.501 kb on - strand at 378.505 kb on + strand at 378.505 kb on + strand at 378.506 kb on - strand at 378.506 kb on - strand at 378.511 kb on + strand at 378.511 kb on + strand at 378.512 kb on - strand at 378.534 kb on - strand at 378.548 kb on + strand at 378.549 kb on - strand at 378.554 kb on + strand at 378.554 kb on + strand at 378.554 kb on + strand at 378.555 kb on - strand at 378.555 kb on - strand at 378.555 kb on - strand at 378.555 kb on - strand at 378.566 kb on + strand at 378.567 kb on - strand at 378.567 kb on - strand at 378.567 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.622 kb on - strand at 378.633 kb on + strand at 378.633 kb on + strand at 378.749 kb on - strand, within Sama_0313 at 378.749 kb on - strand, within Sama_0313 at 378.781 kb on - strand, within Sama_0313 at 378.803 kb on - strand, within Sama_0313 at 378.807 kb on + strand, within Sama_0313 at 378.807 kb on + strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.808 kb on - strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.839 kb on + strand, within Sama_0313 at 378.840 kb on - strand, within Sama_0313 at 378.840 kb on - strand, within Sama_0313 at 378.857 kb on - strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.902 kb on + strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.903 kb on - strand, within Sama_0313 at 378.930 kb on + strand, within Sama_0313 at 378.930 kb on + strand, within Sama_0313 at 378.988 kb on + strand, within Sama_0313 at 378.988 kb on + strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 378.989 kb on - strand, within Sama_0313 at 379.017 kb on + strand, within Sama_0313 at 379.017 kb on + strand, within Sama_0313 at 379.090 kb on + strand, within Sama_0313 at 379.091 kb on - strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.100 kb on + strand, within Sama_0313 at 379.101 kb on - strand, within Sama_0313 at 379.101 kb on - strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.218 kb on + strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.219 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.221 kb on - strand, within Sama_0313 at 379.253 kb on - strand, within Sama_0313 at 379.290 kb on + strand, within Sama_0313 at 379.290 kb on + strand, within Sama_0313 at 379.341 kb on - strand at 379.439 kb on + strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.440 kb on - strand at 379.468 kb on - strand at 379.477 kb on - strand at 379.477 kb on - strand at 379.530 kb on + strand at 379.530 kb on + strand at 379.553 kb on + strand at 379.592 kb on + strand, within Sama_0314 at 379.598 kb on - strand, within Sama_0314 at 379.599 kb on + strand, within Sama_0314 at 379.599 kb on + strand, within Sama_0314 at 379.619 kb on - strand, within Sama_0314 at 379.619 kb on - strand, within Sama_0314 at 379.634 kb on + strand, within Sama_0314 at 379.635 kb on - strand, within Sama_0314 at 379.648 kb on + strand, within Sama_0314 at 379.673 kb on + strand, within Sama_0314 at 379.690 kb on - strand, within Sama_0314 at 379.690 kb on - strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.693 kb on + strand, within Sama_0314 at 379.700 kb on - strand, within Sama_0314 at 379.712 kb on + strand, within Sama_0314 at 379.713 kb on - strand, within Sama_0314 at 379.748 kb on - strand, within Sama_0314 at 379.774 kb on + strand, within Sama_0314 at 379.799 kb on - strand, within Sama_0314 at 379.834 kb on + strand at 379.835 kb on - strand at 379.835 kb on - strand at 379.837 kb on - strand at 379.873 kb on + strand at 379.874 kb on - strand at 379.988 kb on - strand at 379.988 kb on - strand at 380.008 kb on + strand at 380.101 kb on + strand at 380.120 kb on - strand at 380.123 kb on - strand at 380.141 kb on + strand at 380.142 kb on - strand at 380.142 kb on - strand at 380.190 kb on + strand at 380.193 kb on + strand at 380.193 kb on + strand at 380.233 kb on + strand at 380.234 kb on - strand at 380.242 kb on + strand at 380.309 kb on + strand at 380.310 kb on - strand at 380.343 kb on - strand at 380.352 kb on + strand at 380.353 kb on - strand at 380.353 kb on - strand at 380.358 kb on + strand at 380.359 kb on - strand at 380.370 kb on + strand at 380.371 kb on - strand at 380.371 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction outer cut, LB soft agar motility assay remove 377,612 - Sama_0312 0.14 -1.8 377,615 - Sama_0312 0.15 -0.8 377,630 - Sama_0312 0.17 -0.8 377,631 + Sama_0312 0.17 +1.3 377,632 - Sama_0312 0.17 -1.2 377,633 + Sama_0312 0.17 +0.5 377,633 + Sama_0312 0.17 +1.5 377,633 + Sama_0312 0.17 +1.9 377,633 + Sama_0312 0.17 -1.5 377,633 + Sama_0312 0.17 +0.8 377,633 + Sama_0312 0.17 +1.3 377,633 + Sama_0312 0.17 -0.5 377,633 + Sama_0312 0.17 -2.9 377,634 - Sama_0312 0.17 -1.8 377,634 - Sama_0312 0.17 +2.8 377,634 - Sama_0312 0.17 -1.3 377,699 + Sama_0312 0.27 +0.7 377,724 - Sama_0312 0.30 -0.1 377,767 - Sama_0312 0.36 -1.3 377,796 + Sama_0312 0.40 -0.8 377,803 - Sama_0312 0.41 +2.8 377,803 - Sama_0312 0.41 -2.3 377,806 - Sama_0312 0.42 +1.5 377,835 + Sama_0312 0.46 -0.5 377,858 - Sama_0312 0.49 +1.4 377,893 - Sama_0312 0.54 -1.0 377,915 + Sama_0312 0.57 +0.4 377,916 - Sama_0312 0.57 -2.9 378,036 - Sama_0312 0.74 -0.0 378,036 - Sama_0312 0.74 -4.0 378,036 - Sama_0312 0.74 -1.3 378,040 - Sama_0312 0.75 -0.2 378,084 + Sama_0312 0.81 +0.5 378,106 + Sama_0312 0.84 -0.6 378,173 + -0.8 378,174 - +3.0 378,190 + -1.9 378,224 + -1.9 378,235 + -0.2 378,236 - -1.0 378,236 - -0.6 378,237 + +1.2 378,237 + -1.6 378,241 - +0.8 378,241 - -0.0 378,253 + -1.5 378,311 - +0.7 378,311 - +4.8 378,324 + +0.1 378,324 + -0.8 378,349 + -0.0 378,349 + -1.9 378,350 - +1.4 378,363 + -2.5 378,364 - -1.5 378,369 + -1.0 378,369 + -3.5 378,370 - +1.7 378,370 - -0.8 378,382 - -1.5 378,401 - -0.5 378,432 + +2.1 378,432 + -1.3 378,433 - +0.4 378,433 - -0.5 378,485 + +2.2 378,485 + +1.9 378,486 - -2.9 378,486 - +1.4 378,500 + +1.1 378,500 + -1.0 378,501 - +0.2 378,501 - -1.6 378,501 - -2.3 378,501 - -0.3 378,501 - -1.8 378,505 + +2.0 378,505 + +1.0 378,506 - +1.8 378,506 - +1.8 378,511 + +2.9 378,511 + -2.8 378,512 - -0.9 378,534 - -1.5 378,548 + -1.0 378,549 - -1.7 378,554 + +1.4 378,554 + -1.0 378,554 + -1.6 378,555 - +1.5 378,555 - -0.6 378,555 - +2.3 378,555 - +0.4 378,566 + +0.8 378,567 - -1.3 378,567 - -0.3 378,567 - -1.0 378,622 - +2.1 378,622 - +1.5 378,622 - -0.5 378,622 - -0.9 378,633 + -1.0 378,633 + -3.2 378,749 - Sama_0313 0.19 +0.1 378,749 - Sama_0313 0.19 +1.1 378,781 - Sama_0313 0.23 +1.9 378,803 - Sama_0313 0.25 -2.5 378,807 + Sama_0313 0.26 +1.1 378,807 + Sama_0313 0.26 -0.8 378,808 - Sama_0313 0.26 +0.1 378,808 - Sama_0313 0.26 -3.2 378,808 - Sama_0313 0.26 +1.6 378,839 + Sama_0313 0.30 -0.5 378,839 + Sama_0313 0.30 +0.5 378,839 + Sama_0313 0.30 +1.5 378,840 - Sama_0313 0.30 +1.7 378,840 - Sama_0313 0.30 +0.3 378,857 - Sama_0313 0.32 -2.6 378,902 + Sama_0313 0.38 -0.3 378,902 + Sama_0313 0.38 -2.0 378,902 + Sama_0313 0.38 -1.2 378,902 + Sama_0313 0.38 -0.9 378,902 + Sama_0313 0.38 -0.7 378,902 + Sama_0313 0.38 -1.7 378,903 - Sama_0313 0.38 -1.8 378,903 - Sama_0313 0.38 -0.6 378,903 - Sama_0313 0.38 -0.5 378,930 + Sama_0313 0.42 -3.5 378,930 + Sama_0313 0.42 -0.9 378,988 + Sama_0313 0.49 +0.6 378,988 + Sama_0313 0.49 +0.1 378,989 - Sama_0313 0.49 -2.5 378,989 - Sama_0313 0.49 -0.5 378,989 - Sama_0313 0.49 -1.3 379,017 + Sama_0313 0.53 -1.0 379,017 + Sama_0313 0.53 +0.8 379,090 + Sama_0313 0.62 -3.0 379,091 - Sama_0313 0.62 -1.6 379,100 + Sama_0313 0.63 +3.3 379,100 + Sama_0313 0.63 -1.6 379,100 + Sama_0313 0.63 -1.8 379,101 - Sama_0313 0.63 -0.2 379,101 - Sama_0313 0.63 -0.5 379,218 + Sama_0313 0.78 -2.2 379,218 + Sama_0313 0.78 +3.9 379,218 + Sama_0313 0.78 +3.0 379,218 + Sama_0313 0.78 -0.8 379,218 + Sama_0313 0.78 -2.3 379,218 + Sama_0313 0.78 -1.5 379,218 + Sama_0313 0.78 -1.0 379,218 + Sama_0313 0.78 -1.3 379,218 + Sama_0313 0.78 +0.3 379,218 + Sama_0313 0.78 -1.2 379,219 - Sama_0313 0.79 +1.7 379,219 - Sama_0313 0.79 -3.5 379,219 - Sama_0313 0.79 -2.0 379,219 - Sama_0313 0.79 +3.9 379,221 - Sama_0313 0.79 -2.5 379,221 - Sama_0313 0.79 -0.6 379,221 - Sama_0313 0.79 -0.1 379,221 - Sama_0313 0.79 -3.0 379,221 - Sama_0313 0.79 -2.0 379,253 - Sama_0313 0.83 +1.0 379,290 + Sama_0313 0.88 +2.9 379,290 + Sama_0313 0.88 +5.5 379,341 - +0.6 379,439 + -0.4 379,440 - -0.1 379,440 - -0.0 379,440 - +1.4 379,440 - -2.0 379,468 - +2.1 379,477 - +0.9 379,477 - +0.3 379,530 + +0.5 379,530 + -1.5 379,553 + -2.2 379,592 + Sama_0314 0.13 +0.4 379,598 - Sama_0314 0.15 -2.5 379,599 + Sama_0314 0.15 +1.4 379,599 + Sama_0314 0.15 -1.0 379,619 - Sama_0314 0.23 -1.5 379,619 - Sama_0314 0.23 +3.8 379,634 + Sama_0314 0.28 +0.9 379,635 - Sama_0314 0.28 -2.9 379,648 + Sama_0314 0.33 +1.3 379,673 + Sama_0314 0.42 -0.9 379,690 - Sama_0314 0.48 -0.1 379,690 - Sama_0314 0.48 -1.5 379,693 + Sama_0314 0.49 +1.0 379,693 + Sama_0314 0.49 -0.0 379,693 + Sama_0314 0.49 +2.8 379,700 - Sama_0314 0.52 -1.4 379,712 + Sama_0314 0.56 -0.5 379,713 - Sama_0314 0.56 -2.2 379,748 - Sama_0314 0.69 -0.3 379,774 + Sama_0314 0.78 -1.3 379,799 - Sama_0314 0.87 +1.5 379,834 + +1.0 379,835 - -1.8 379,835 - +0.3 379,837 - -0.2 379,873 + -2.7 379,874 - +2.9 379,988 - +1.1 379,988 - -0.8 380,008 + -0.6 380,101 + +1.7 380,120 - +1.7 380,123 - +0.2 380,141 + -1.3 380,142 - -0.5 380,142 - -0.8 380,190 + +1.5 380,193 + -0.8 380,193 + +1.0 380,233 + -2.3 380,234 - +0.8 380,242 + -2.6 380,309 + -0.0 380,310 - +1.5 380,343 - -0.9 380,352 + +0.7 380,353 - -0.4 380,353 - -1.5 380,358 + -0.0 380,359 - +1.0 380,370 + +0.4 380,371 - +0.4 380,371 - -0.0
Or see this region's nucleotide sequence