Experiment: MoLS4 with L-Serine (N) without Molybdate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1181 and DVU1182 are separated by 48 nucleotides DVU1182 and DVU1183 overlap by 19 nucleotides DVU1183 and DVU1185 are separated by 170 nucleotides DVU1185 and mazG are separated by 27 nucleotides
DVU1181: DVU1181 - response regulator (TIGR), at 1,271,372 to 1,272,442
DVU1181
DVU1182: DVU1182 - hypothetical protein (TIGR), at 1,272,491 to 1,273,405
DVU1182
DVU1183: DVU1183 - HD domain protein (TIGR), at 1,273,387 to 1,274,634
DVU1183
DVU1185: DVU1185 - colicin V production family protein (TIGR), at 1,274,805 to 1,275,284
DVU1185
DVU1186: mazG - phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data) , at 1,275,312 to 1,276,115
mazG
Position (kb)
1273
1274
1275 Strain fitness (log2 ratio)
-1
0
1 at 1272.493 kb on + strand at 1272.537 kb on - strand at 1272.537 kb on - strand at 1272.675 kb on - strand, within DVU1182 at 1272.688 kb on + strand, within DVU1182 at 1272.703 kb on + strand, within DVU1182 at 1272.711 kb on - strand, within DVU1182 at 1272.711 kb on - strand, within DVU1182 at 1272.711 kb on - strand, within DVU1182 at 1272.711 kb on - strand, within DVU1182 at 1272.724 kb on - strand, within DVU1182 at 1272.803 kb on + strand, within DVU1182 at 1272.810 kb on + strand, within DVU1182 at 1272.810 kb on + strand, within DVU1182 at 1272.811 kb on - strand, within DVU1182 at 1272.901 kb on - strand, within DVU1182 at 1272.968 kb on - strand, within DVU1182 at 1272.995 kb on - strand, within DVU1182 at 1273.257 kb on + strand, within DVU1182 at 1273.265 kb on - strand, within DVU1182 at 1273.319 kb on + strand at 1273.365 kb on - strand at 1273.413 kb on - strand at 1273.414 kb on + strand at 1273.450 kb on + strand at 1273.458 kb on - strand at 1273.599 kb on - strand, within DVU1183 at 1273.608 kb on - strand, within DVU1183 at 1273.761 kb on + strand, within DVU1183 at 1273.845 kb on - strand, within DVU1183 at 1273.869 kb on - strand, within DVU1183 at 1273.938 kb on + strand, within DVU1183 at 1273.956 kb on - strand, within DVU1183 at 1273.973 kb on + strand, within DVU1183 at 1274.045 kb on - strand, within DVU1183 at 1274.065 kb on + strand, within DVU1183 at 1274.073 kb on - strand, within DVU1183 at 1274.163 kb on - strand, within DVU1183 at 1274.165 kb on + strand, within DVU1183 at 1274.173 kb on - strand, within DVU1183 at 1274.205 kb on + strand, within DVU1183 at 1274.213 kb on - strand, within DVU1183 at 1274.213 kb on - strand, within DVU1183 at 1274.213 kb on - strand, within DVU1183 at 1274.223 kb on - strand, within DVU1183 at 1274.256 kb on - strand, within DVU1183 at 1274.404 kb on + strand, within DVU1183 at 1274.407 kb on + strand, within DVU1183 at 1274.413 kb on - strand, within DVU1183 at 1274.429 kb on + strand, within DVU1183 at 1274.475 kb on - strand, within DVU1183 at 1274.490 kb on + strand, within DVU1183 at 1274.619 kb on + strand at 1274.627 kb on - strand at 1274.670 kb on - strand at 1274.728 kb on - strand at 1274.741 kb on + strand at 1274.754 kb on - strand at 1274.794 kb on - strand at 1274.886 kb on - strand, within DVU1185 at 1275.013 kb on - strand, within DVU1185 at 1275.263 kb on - strand at 1275.330 kb on + strand at 1275.370 kb on + strand at 1275.372 kb on + strand at 1275.439 kb on + strand, within mazG at 1275.524 kb on + strand, within mazG
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate remove 1,272,493 + -0.1 1,272,537 - +1.1 1,272,537 - -0.2 1,272,675 - DVU1182 0.20 -0.7 1,272,688 + DVU1182 0.22 -0.3 1,272,703 + DVU1182 0.23 +0.0 1,272,711 - DVU1182 0.24 -0.3 1,272,711 - DVU1182 0.24 +1.0 1,272,711 - DVU1182 0.24 +0.1 1,272,711 - DVU1182 0.24 +0.6 1,272,724 - DVU1182 0.25 +0.0 1,272,803 + DVU1182 0.34 +0.0 1,272,810 + DVU1182 0.35 -0.6 1,272,810 + DVU1182 0.35 -0.2 1,272,811 - DVU1182 0.35 -0.2 1,272,901 - DVU1182 0.45 +1.0 1,272,968 - DVU1182 0.52 -0.3 1,272,995 - DVU1182 0.55 -0.1 1,273,257 + DVU1182 0.84 +1.3 1,273,265 - DVU1182 0.85 +0.6 1,273,319 + -0.7 1,273,365 - +0.1 1,273,413 - -0.1 1,273,414 + -0.0 1,273,450 + +0.6 1,273,458 - +0.7 1,273,599 - DVU1183 0.17 +0.3 1,273,608 - DVU1183 0.18 +0.2 1,273,761 + DVU1183 0.30 +0.2 1,273,845 - DVU1183 0.37 +0.4 1,273,869 - DVU1183 0.39 +0.6 1,273,938 + DVU1183 0.44 +0.2 1,273,956 - DVU1183 0.46 +0.9 1,273,973 + DVU1183 0.47 +0.3 1,274,045 - DVU1183 0.53 +1.5 1,274,065 + DVU1183 0.54 +0.5 1,274,073 - DVU1183 0.55 +0.3 1,274,163 - DVU1183 0.62 +1.3 1,274,165 + DVU1183 0.62 -0.2 1,274,173 - DVU1183 0.63 +0.5 1,274,205 + DVU1183 0.66 -0.0 1,274,213 - DVU1183 0.66 -0.1 1,274,213 - DVU1183 0.66 +1.0 1,274,213 - DVU1183 0.66 +0.4 1,274,223 - DVU1183 0.67 -0.1 1,274,256 - DVU1183 0.70 +0.1 1,274,404 + DVU1183 0.81 +0.3 1,274,407 + DVU1183 0.82 -0.2 1,274,413 - DVU1183 0.82 -0.1 1,274,429 + DVU1183 0.83 -0.2 1,274,475 - DVU1183 0.87 +1.6 1,274,490 + DVU1183 0.88 +0.2 1,274,619 + +0.0 1,274,627 - -0.4 1,274,670 - +1.1 1,274,728 - -0.5 1,274,741 + -0.2 1,274,754 - -0.5 1,274,794 - -0.4 1,274,886 - DVU1185 0.17 -0.3 1,275,013 - DVU1185 0.43 -0.8 1,275,263 - +0.6 1,275,330 + +1.2 1,275,370 + -0.0 1,275,372 + +0.3 1,275,439 + mazG DVU1186 0.16 -0.1 1,275,524 + mazG DVU1186 0.26 +0.6
Or see this region's nucleotide sequence