Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1183

Experiment: MoLS4 with L-Serine (N) without Molybdate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU1181 and DVU1182 are separated by 48 nucleotidesDVU1182 and DVU1183 overlap by 19 nucleotidesDVU1183 and DVU1185 are separated by 170 nucleotidesDVU1185 and mazG are separated by 27 nucleotides DVU1181: DVU1181 - response regulator (TIGR), at 1,271,372 to 1,272,442 DVU1181 DVU1182: DVU1182 - hypothetical protein (TIGR), at 1,272,491 to 1,273,405 DVU1182 DVU1183: DVU1183 - HD domain protein (TIGR), at 1,273,387 to 1,274,634 DVU1183 DVU1185: DVU1185 - colicin V production family protein (TIGR), at 1,274,805 to 1,275,284 DVU1185 DVU1186: mazG - phosphoribosyl-ATP diphosphatase (EC 3.6.1.31) (from data), at 1,275,312 to 1,276,115 mazG Position (kb) 1273 1274 1275Strain fitness (log2 ratio) -1 0 1at 1272.493 kb on + strandat 1272.537 kb on - strandat 1272.537 kb on - strandat 1272.675 kb on - strand, within DVU1182at 1272.688 kb on + strand, within DVU1182at 1272.703 kb on + strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.711 kb on - strand, within DVU1182at 1272.724 kb on - strand, within DVU1182at 1272.803 kb on + strand, within DVU1182at 1272.810 kb on + strand, within DVU1182at 1272.810 kb on + strand, within DVU1182at 1272.811 kb on - strand, within DVU1182at 1272.901 kb on - strand, within DVU1182at 1272.968 kb on - strand, within DVU1182at 1272.995 kb on - strand, within DVU1182at 1273.257 kb on + strand, within DVU1182at 1273.265 kb on - strand, within DVU1182at 1273.319 kb on + strandat 1273.365 kb on - strandat 1273.413 kb on - strandat 1273.414 kb on + strandat 1273.450 kb on + strandat 1273.458 kb on - strandat 1273.599 kb on - strand, within DVU1183at 1273.608 kb on - strand, within DVU1183at 1273.761 kb on + strand, within DVU1183at 1273.845 kb on - strand, within DVU1183at 1273.869 kb on - strand, within DVU1183at 1273.938 kb on + strand, within DVU1183at 1273.956 kb on - strand, within DVU1183at 1273.973 kb on + strand, within DVU1183at 1274.045 kb on - strand, within DVU1183at 1274.065 kb on + strand, within DVU1183at 1274.073 kb on - strand, within DVU1183at 1274.163 kb on - strand, within DVU1183at 1274.165 kb on + strand, within DVU1183at 1274.173 kb on - strand, within DVU1183at 1274.205 kb on + strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.213 kb on - strand, within DVU1183at 1274.223 kb on - strand, within DVU1183at 1274.256 kb on - strand, within DVU1183at 1274.404 kb on + strand, within DVU1183at 1274.407 kb on + strand, within DVU1183at 1274.413 kb on - strand, within DVU1183at 1274.429 kb on + strand, within DVU1183at 1274.475 kb on - strand, within DVU1183at 1274.490 kb on + strand, within DVU1183at 1274.619 kb on + strandat 1274.627 kb on - strandat 1274.670 kb on - strandat 1274.728 kb on - strandat 1274.741 kb on + strandat 1274.754 kb on - strandat 1274.794 kb on - strandat 1274.886 kb on - strand, within DVU1185at 1275.013 kb on - strand, within DVU1185at 1275.263 kb on - strandat 1275.330 kb on + strandat 1275.370 kb on + strandat 1275.372 kb on + strandat 1275.439 kb on + strand, within mazGat 1275.524 kb on + strand, within mazG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
remove
1,272,493 + -0.1
1,272,537 - +1.1
1,272,537 - -0.2
1,272,675 - DVU1182 0.20 -0.7
1,272,688 + DVU1182 0.22 -0.3
1,272,703 + DVU1182 0.23 +0.0
1,272,711 - DVU1182 0.24 -0.3
1,272,711 - DVU1182 0.24 +1.0
1,272,711 - DVU1182 0.24 +0.1
1,272,711 - DVU1182 0.24 +0.6
1,272,724 - DVU1182 0.25 +0.0
1,272,803 + DVU1182 0.34 +0.0
1,272,810 + DVU1182 0.35 -0.6
1,272,810 + DVU1182 0.35 -0.2
1,272,811 - DVU1182 0.35 -0.2
1,272,901 - DVU1182 0.45 +1.0
1,272,968 - DVU1182 0.52 -0.3
1,272,995 - DVU1182 0.55 -0.1
1,273,257 + DVU1182 0.84 +1.3
1,273,265 - DVU1182 0.85 +0.6
1,273,319 + -0.7
1,273,365 - +0.1
1,273,413 - -0.1
1,273,414 + -0.0
1,273,450 + +0.6
1,273,458 - +0.7
1,273,599 - DVU1183 0.17 +0.3
1,273,608 - DVU1183 0.18 +0.2
1,273,761 + DVU1183 0.30 +0.2
1,273,845 - DVU1183 0.37 +0.4
1,273,869 - DVU1183 0.39 +0.6
1,273,938 + DVU1183 0.44 +0.2
1,273,956 - DVU1183 0.46 +0.9
1,273,973 + DVU1183 0.47 +0.3
1,274,045 - DVU1183 0.53 +1.5
1,274,065 + DVU1183 0.54 +0.5
1,274,073 - DVU1183 0.55 +0.3
1,274,163 - DVU1183 0.62 +1.3
1,274,165 + DVU1183 0.62 -0.2
1,274,173 - DVU1183 0.63 +0.5
1,274,205 + DVU1183 0.66 -0.0
1,274,213 - DVU1183 0.66 -0.1
1,274,213 - DVU1183 0.66 +1.0
1,274,213 - DVU1183 0.66 +0.4
1,274,223 - DVU1183 0.67 -0.1
1,274,256 - DVU1183 0.70 +0.1
1,274,404 + DVU1183 0.81 +0.3
1,274,407 + DVU1183 0.82 -0.2
1,274,413 - DVU1183 0.82 -0.1
1,274,429 + DVU1183 0.83 -0.2
1,274,475 - DVU1183 0.87 +1.6
1,274,490 + DVU1183 0.88 +0.2
1,274,619 + +0.0
1,274,627 - -0.4
1,274,670 - +1.1
1,274,728 - -0.5
1,274,741 + -0.2
1,274,754 - -0.5
1,274,794 - -0.4
1,274,886 - DVU1185 0.17 -0.3
1,275,013 - DVU1185 0.43 -0.8
1,275,263 - +0.6
1,275,330 + +1.2
1,275,370 + -0.0
1,275,372 + +0.3
1,275,439 + mazG DVU1186 0.16 -0.1
1,275,524 + mazG DVU1186 0.26 +0.6

Or see this region's nucleotide sequence