Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3348

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDORF24435 and DVU3347 are separated by 312 nucleotidesDVU3347 and DVU3348 overlap by 1 nucleotidesDVU3348 and DVU3349 overlap by 1 nucleotides DORF24435: DORF24435 - SEED: Sll1863 protein, at 3,518,663 to 3,518,953 DORF24435 DVU3347: DVU3347 - pyruvate ferredoxin/flavodoxin oxidoreductase family protein (TIGR), at 3,519,266 to 3,519,814 DVU3347 DVU3348: DVU3348 - pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit, putative (TIGR), at 3,519,814 to 3,520,596 DVU3348 DVU3349: DVU3349 - pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein (TIGR), at 3,520,596 to 3,521,669 DVU3349 Position (kb) 3519 3520 3521Strain fitness (log2 ratio) -2 -1 0 1at 3518.853 kb on + strand, within DORF24435at 3518.853 kb on + strand, within DORF24435at 3518.982 kb on - strandat 3519.057 kb on - strandat 3519.107 kb on + strandat 3519.129 kb on + strandat 3519.191 kb on - strandat 3519.225 kb on - strandat 3519.249 kb on + strandat 3519.249 kb on + strandat 3519.257 kb on - strandat 3519.257 kb on - strandat 3519.561 kb on + strand, within DVU3347at 3519.842 kb on + strandat 3519.850 kb on - strandat 3520.022 kb on + strand, within DVU3348at 3520.250 kb on + strand, within DVU3348at 3520.310 kb on + strand, within DVU3348at 3520.932 kb on - strand, within DVU3349at 3520.947 kb on - strand, within DVU3349at 3521.403 kb on - strand, within DVU3349

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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3,518,853 + DORF24435 0.65 -0.9
3,518,853 + DORF24435 0.65 -0.0
3,518,982 - -0.1
3,519,057 - -0.3
3,519,107 + +0.5
3,519,129 + +0.5
3,519,191 - -0.1
3,519,225 - +0.0
3,519,249 + -0.3
3,519,249 + +0.2
3,519,257 - -1.6
3,519,257 - -0.4
3,519,561 + DVU3347 0.54 +0.9
3,519,842 + +1.5
3,519,850 - +0.5
3,520,022 + DVU3348 0.27 -1.2
3,520,250 + DVU3348 0.56 -0.5
3,520,310 + DVU3348 0.63 -0.3
3,520,932 - DVU3349 0.31 -1.8
3,520,947 - DVU3349 0.33 +1.5
3,521,403 - DVU3349 0.75 -0.7

Or see this region's nucleotide sequence