Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3033

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3031 and DVU3032 overlap by 4 nucleotidesDVU3032 and DVU3033 are separated by 3 nucleotidesDVU3033 and DVU3035 are separated by 191 nucleotides DVU3031: DVU3031 - conserved hypothetical protein (TIGR), at 3,155,664 to 3,156,755 DVU3031 DVU3032: DVU3032 - conserved hypothetical protein (TIGR), at 3,156,752 to 3,157,381 DVU3032 DVU3033: DVU3033 - iron-sulfur cluster-binding protein (TIGR), at 3,157,385 to 3,159,538 DVU3033 DVU3035: DVU3035 - methyl-accepting chemotaxis protein, putative (TIGR), at 3,159,730 to 3,161,541 DVU3035 Position (kb) 3157 3158 3159 3160Strain fitness (log2 ratio) -2 -1 0 1 2at 3156.528 kb on - strand, within DVU3031at 3156.542 kb on + strand, within DVU3031at 3156.607 kb on - strand, within DVU3031at 3156.648 kb on - strandat 3156.656 kb on + strandat 3156.761 kb on + strandat 3156.792 kb on + strandat 3156.832 kb on - strand, within DVU3032at 3156.863 kb on - strand, within DVU3032at 3157.002 kb on + strand, within DVU3032at 3157.049 kb on + strand, within DVU3032at 3157.143 kb on + strand, within DVU3032at 3157.235 kb on - strand, within DVU3032at 3157.288 kb on - strand, within DVU3032at 3157.342 kb on - strandat 3157.383 kb on - strandat 3157.383 kb on - strandat 3157.383 kb on - strandat 3157.401 kb on - strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.597 kb on + strandat 3157.605 kb on - strand, within DVU3033at 3157.605 kb on - strand, within DVU3033at 3157.623 kb on + strand, within DVU3033at 3157.631 kb on - strand, within DVU3033at 3157.763 kb on - strand, within DVU3033at 3157.885 kb on + strand, within DVU3033at 3157.964 kb on + strand, within DVU3033at 3158.069 kb on + strand, within DVU3033at 3158.110 kb on + strand, within DVU3033at 3158.218 kb on + strand, within DVU3033at 3158.312 kb on + strand, within DVU3033at 3158.312 kb on + strand, within DVU3033at 3158.400 kb on - strand, within DVU3033at 3158.470 kb on - strand, within DVU3033at 3158.505 kb on - strand, within DVU3033at 3158.569 kb on - strand, within DVU3033at 3158.796 kb on + strand, within DVU3033at 3158.826 kb on - strand, within DVU3033at 3158.847 kb on + strand, within DVU3033at 3158.857 kb on + strand, within DVU3033at 3158.860 kb on - strand, within DVU3033at 3158.865 kb on - strand, within DVU3033at 3158.865 kb on - strand, within DVU3033at 3158.915 kb on + strand, within DVU3033at 3158.923 kb on - strand, within DVU3033at 3158.925 kb on + strand, within DVU3033at 3158.952 kb on - strand, within DVU3033at 3158.996 kb on + strand, within DVU3033at 3159.024 kb on + strand, within DVU3033at 3159.031 kb on + strand, within DVU3033at 3159.055 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.069 kb on + strand, within DVU3033at 3159.077 kb on - strand, within DVU3033at 3159.087 kb on - strand, within DVU3033at 3159.087 kb on - strand, within DVU3033at 3159.238 kb on - strand, within DVU3033at 3159.441 kb on - strandat 3159.490 kb on + strandat 3159.551 kb on - strandat 3159.637 kb on + strandat 3159.664 kb on + strandat 3159.672 kb on - strandat 3159.682 kb on - strandat 3159.686 kb on + strandat 3159.691 kb on + strandat 3159.868 kb on + strandat 3159.977 kb on - strand, within DVU3035at 3160.014 kb on + strand, within DVU3035at 3160.037 kb on - strand, within DVU3035at 3160.081 kb on + strand, within DVU3035at 3160.128 kb on - strand, within DVU3035at 3160.161 kb on + strand, within DVU3035at 3160.220 kb on - strand, within DVU3035at 3160.373 kb on + strand, within DVU3035at 3160.461 kb on - strand, within DVU3035at 3160.508 kb on - strand, within DVU3035at 3160.531 kb on + strand, within DVU3035at 3160.531 kb on + strand, within DVU3035

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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3,156,528 - DVU3031 0.79 -0.2
3,156,542 + DVU3031 0.80 +1.2
3,156,607 - DVU3031 0.86 +1.4
3,156,648 - -1.2
3,156,656 + -0.9
3,156,761 + +1.5
3,156,792 + +0.1
3,156,832 - DVU3032 0.13 +0.1
3,156,863 - DVU3032 0.18 -1.1
3,157,002 + DVU3032 0.40 +0.3
3,157,049 + DVU3032 0.47 +0.8
3,157,143 + DVU3032 0.62 +0.7
3,157,235 - DVU3032 0.77 +0.3
3,157,288 - DVU3032 0.85 +0.2
3,157,342 - +0.5
3,157,383 - -0.9
3,157,383 - +0.8
3,157,383 - +0.5
3,157,401 - +0.5
3,157,597 + +0.3
3,157,597 + -1.7
3,157,597 + +0.2
3,157,597 + +0.9
3,157,597 + +0.2
3,157,605 - DVU3033 0.10 -0.2
3,157,605 - DVU3033 0.10 -0.6
3,157,623 + DVU3033 0.11 -0.3
3,157,631 - DVU3033 0.11 +0.3
3,157,763 - DVU3033 0.18 +0.0
3,157,885 + DVU3033 0.23 +1.2
3,157,964 + DVU3033 0.27 +0.1
3,158,069 + DVU3033 0.32 +1.0
3,158,110 + DVU3033 0.34 +0.1
3,158,218 + DVU3033 0.39 +0.2
3,158,312 + DVU3033 0.43 +0.4
3,158,312 + DVU3033 0.43 +0.4
3,158,400 - DVU3033 0.47 -0.4
3,158,470 - DVU3033 0.50 +0.8
3,158,505 - DVU3033 0.52 -0.0
3,158,569 - DVU3033 0.55 -0.0
3,158,796 + DVU3033 0.66 -0.2
3,158,826 - DVU3033 0.67 -0.1
3,158,847 + DVU3033 0.68 +0.5
3,158,857 + DVU3033 0.68 -1.0
3,158,860 - DVU3033 0.68 -1.8
3,158,865 - DVU3033 0.69 +0.7
3,158,865 - DVU3033 0.69 +0.3
3,158,915 + DVU3033 0.71 +0.5
3,158,923 - DVU3033 0.71 +2.2
3,158,925 + DVU3033 0.71 +0.1
3,158,952 - DVU3033 0.73 -0.5
3,158,996 + DVU3033 0.75 +0.4
3,159,024 + DVU3033 0.76 -0.1
3,159,031 + DVU3033 0.76 +0.1
3,159,055 + DVU3033 0.78 +0.3
3,159,069 + DVU3033 0.78 -0.5
3,159,069 + DVU3033 0.78 -0.3
3,159,069 + DVU3033 0.78 +0.4
3,159,069 + DVU3033 0.78 -0.3
3,159,077 - DVU3033 0.79 -0.4
3,159,087 - DVU3033 0.79 -0.2
3,159,087 - DVU3033 0.79 -0.3
3,159,238 - DVU3033 0.86 +0.2
3,159,441 - -0.0
3,159,490 + -0.1
3,159,551 - +0.5
3,159,637 + +1.1
3,159,664 + +0.2
3,159,672 - -0.2
3,159,682 - +0.2
3,159,686 + +0.3
3,159,691 + -0.5
3,159,868 + -0.5
3,159,977 - DVU3035 0.14 +0.4
3,160,014 + DVU3035 0.16 +0.4
3,160,037 - DVU3035 0.17 -1.0
3,160,081 + DVU3035 0.19 +0.2
3,160,128 - DVU3035 0.22 -0.1
3,160,161 + DVU3035 0.24 -0.7
3,160,220 - DVU3035 0.27 -1.0
3,160,373 + DVU3035 0.35 +2.5
3,160,461 - DVU3035 0.40 -0.3
3,160,508 - DVU3035 0.43 -0.3
3,160,531 + DVU3035 0.44 -0.8
3,160,531 + DVU3035 0.44 -0.1

Or see this region's nucleotide sequence