Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2877

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2876 and DVU2877 are separated by 91 nucleotidesDVU2877 and DVU2878 overlap by 8 nucleotides DVU2876: DVU2876 - terminase, large subunit, putative (TIGR), at 2,969,464 to 2,971,350 DVU2876 DVU2877: DVU2877 - hypothetical protein (TIGR), at 2,971,442 to 2,972,164 DVU2877 DVU2878: DVU2878 - adenine specific DNA methyltransferase, putative (TIGR), at 2,972,157 to 2,973,515 DVU2878 Position (kb) 2971 2972 2973Strain fitness (log2 ratio) -1 0 1at 2970.451 kb on - strand, within DVU2876at 2970.630 kb on + strand, within DVU2876at 2970.637 kb on + strand, within DVU2876at 2970.665 kb on + strand, within DVU2876at 2970.678 kb on - strand, within DVU2876at 2970.681 kb on + strand, within DVU2876at 2970.788 kb on - strand, within DVU2876at 2970.833 kb on + strand, within DVU2876at 2970.843 kb on + strand, within DVU2876at 2970.889 kb on - strand, within DVU2876at 2970.907 kb on - strand, within DVU2876at 2970.958 kb on + strand, within DVU2876at 2970.978 kb on + strand, within DVU2876at 2971.058 kb on + strand, within DVU2876at 2971.064 kb on + strand, within DVU2876at 2971.464 kb on + strandat 2971.464 kb on + strandat 2971.472 kb on - strandat 2971.472 kb on - strandat 2971.591 kb on + strand, within DVU2877at 2971.596 kb on + strand, within DVU2877at 2971.816 kb on + strand, within DVU2877at 2971.816 kb on + strand, within DVU2877at 2971.824 kb on - strand, within DVU2877at 2971.892 kb on - strand, within DVU2877at 2971.892 kb on - strand, within DVU2877at 2971.896 kb on + strand, within DVU2877at 2971.903 kb on - strand, within DVU2877at 2972.284 kb on - strandat 2972.694 kb on + strand, within DVU2878at 2972.847 kb on + strand, within DVU2878at 2973.051 kb on + strand, within DVU2878at 2973.080 kb on - strand, within DVU2878

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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2,970,451 - DVU2876 0.52 -0.1
2,970,630 + DVU2876 0.62 +0.0
2,970,637 + DVU2876 0.62 +0.7
2,970,665 + DVU2876 0.64 -0.4
2,970,678 - DVU2876 0.64 +0.0
2,970,681 + DVU2876 0.64 -0.7
2,970,788 - DVU2876 0.70 -0.1
2,970,833 + DVU2876 0.73 +0.2
2,970,843 + DVU2876 0.73 -0.1
2,970,889 - DVU2876 0.76 +0.0
2,970,907 - DVU2876 0.76 -0.0
2,970,958 + DVU2876 0.79 -1.2
2,970,978 + DVU2876 0.80 -0.5
2,971,058 + DVU2876 0.84 -0.3
2,971,064 + DVU2876 0.85 +0.3
2,971,464 + +0.0
2,971,464 + -0.2
2,971,472 - -0.3
2,971,472 - +0.1
2,971,591 + DVU2877 0.21 +0.3
2,971,596 + DVU2877 0.21 +0.3
2,971,816 + DVU2877 0.52 +0.4
2,971,816 + DVU2877 0.52 +0.0
2,971,824 - DVU2877 0.53 -0.1
2,971,892 - DVU2877 0.62 -0.0
2,971,892 - DVU2877 0.62 +0.6
2,971,896 + DVU2877 0.63 +1.3
2,971,903 - DVU2877 0.64 +0.3
2,972,284 - +0.8
2,972,694 + DVU2878 0.40 +0.2
2,972,847 + DVU2878 0.51 +0.2
2,973,051 + DVU2878 0.66 +1.3
2,973,080 - DVU2878 0.68 -0.9

Or see this region's nucleotide sequence