Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2715

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2713 and DVU2714 overlap by 4 nucleotidesDVU2714 and DVU2715 are separated by 2 nucleotidesDVU2715 and DVU2716 overlap by 14 nucleotides DVU2713: DVU2713 - conserved hypothetical protein (TIGR), at 2,819,290 to 2,819,721 DVU2713 DVU2714: DVU2714 - conserved hypothetical protein (TIGR), at 2,819,718 to 2,820,347 DVU2714 DVU2715: DVU2715 - conserved hypothetical protein (TIGR), at 2,820,350 to 2,820,535 DVU2715 DVU2716: DVU2716 - tail sheath protein, putative (TIGR), at 2,820,522 to 2,821,943 DVU2716 Position (kb) 2820 2821Strain fitness (log2 ratio) -2 -1 0 1 2at 2819.388 kb on - strand, within DVU2713at 2819.411 kb on + strand, within DVU2713at 2819.493 kb on + strand, within DVU2713at 2819.493 kb on + strand, within DVU2713at 2819.493 kb on + strand, within DVU2713at 2819.493 kb on + strand, within DVU2713at 2819.496 kb on - strand, within DVU2713at 2819.501 kb on - strand, within DVU2713at 2819.501 kb on - strand, within DVU2713at 2819.503 kb on + strand, within DVU2713at 2819.503 kb on + strand, within DVU2713at 2819.550 kb on - strand, within DVU2713at 2819.579 kb on - strand, within DVU2713at 2819.630 kb on + strand, within DVU2713at 2819.639 kb on + strand, within DVU2713at 2819.639 kb on + strand, within DVU2713at 2819.639 kb on + strand, within DVU2713at 2819.647 kb on - strand, within DVU2713at 2819.647 kb on - strand, within DVU2713at 2819.649 kb on + strand, within DVU2713at 2819.685 kb on - strandat 2819.723 kb on + strandat 2819.741 kb on + strandat 2819.827 kb on + strand, within DVU2714at 2819.887 kb on - strand, within DVU2714at 2820.034 kb on - strand, within DVU2714at 2820.062 kb on - strand, within DVU2714at 2820.117 kb on - strand, within DVU2714at 2820.117 kb on - strand, within DVU2714at 2820.164 kb on + strand, within DVU2714at 2820.183 kb on + strand, within DVU2714at 2820.325 kb on - strandat 2820.380 kb on - strand, within DVU2715at 2820.436 kb on + strand, within DVU2715at 2820.453 kb on - strand, within DVU2715at 2820.453 kb on - strand, within DVU2715at 2820.473 kb on + strand, within DVU2715at 2820.552 kb on + strandat 2820.665 kb on - strand, within DVU2716at 2820.675 kb on - strand, within DVU2716at 2820.689 kb on - strand, within DVU2716at 2820.701 kb on - strand, within DVU2716at 2820.703 kb on + strand, within DVU2716at 2820.717 kb on - strand, within DVU2716at 2820.732 kb on + strand, within DVU2716at 2820.745 kb on - strand, within DVU2716at 2820.753 kb on + strand, within DVU2716at 2820.761 kb on - strand, within DVU2716at 2820.801 kb on - strand, within DVU2716at 2820.865 kb on + strand, within DVU2716at 2820.912 kb on - strand, within DVU2716at 2820.914 kb on - strand, within DVU2716at 2820.940 kb on - strand, within DVU2716at 2821.088 kb on - strand, within DVU2716at 2821.090 kb on - strand, within DVU2716at 2821.097 kb on + strand, within DVU2716at 2821.097 kb on + strand, within DVU2716at 2821.097 kb on + strand, within DVU2716at 2821.097 kb on + strand, within DVU2716at 2821.105 kb on + strand, within DVU2716at 2821.232 kb on - strand, within DVU2716at 2821.262 kb on + strand, within DVU2716at 2821.272 kb on - strand, within DVU2716at 2821.272 kb on - strand, within DVU2716at 2821.272 kb on - strand, within DVU2716at 2821.287 kb on + strand, within DVU2716at 2821.287 kb on + strand, within DVU2716at 2821.287 kb on + strand, within DVU2716at 2821.329 kb on - strand, within DVU2716at 2821.329 kb on - strand, within DVU2716at 2821.340 kb on + strand, within DVU2716at 2821.358 kb on - strand, within DVU2716at 2821.435 kb on + strand, within DVU2716at 2821.477 kb on + strand, within DVU2716

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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2,819,388 - DVU2713 0.23 -1.6
2,819,411 + DVU2713 0.28 +0.1
2,819,493 + DVU2713 0.47 +0.0
2,819,493 + DVU2713 0.47 -0.3
2,819,493 + DVU2713 0.47 -1.8
2,819,493 + DVU2713 0.47 +0.4
2,819,496 - DVU2713 0.48 -0.2
2,819,501 - DVU2713 0.49 +0.4
2,819,501 - DVU2713 0.49 -0.3
2,819,503 + DVU2713 0.49 +0.1
2,819,503 + DVU2713 0.49 -0.9
2,819,550 - DVU2713 0.60 +0.4
2,819,579 - DVU2713 0.67 +0.3
2,819,630 + DVU2713 0.79 -0.9
2,819,639 + DVU2713 0.81 -1.4
2,819,639 + DVU2713 0.81 +0.7
2,819,639 + DVU2713 0.81 +1.0
2,819,647 - DVU2713 0.83 -1.0
2,819,647 - DVU2713 0.83 -0.1
2,819,649 + DVU2713 0.83 -0.1
2,819,685 - -0.0
2,819,723 + +0.2
2,819,741 + -0.5
2,819,827 + DVU2714 0.17 -0.2
2,819,887 - DVU2714 0.27 +0.1
2,820,034 - DVU2714 0.50 -0.1
2,820,062 - DVU2714 0.55 -0.6
2,820,117 - DVU2714 0.63 +0.5
2,820,117 - DVU2714 0.63 +0.1
2,820,164 + DVU2714 0.71 -0.3
2,820,183 + DVU2714 0.74 -0.2
2,820,325 - +0.6
2,820,380 - DVU2715 0.16 +0.9
2,820,436 + DVU2715 0.46 +0.8
2,820,453 - DVU2715 0.55 +0.4
2,820,453 - DVU2715 0.55 -0.0
2,820,473 + DVU2715 0.66 +0.2
2,820,552 + +0.8
2,820,665 - DVU2716 0.10 -0.8
2,820,675 - DVU2716 0.11 +0.1
2,820,689 - DVU2716 0.12 -0.9
2,820,701 - DVU2716 0.13 -0.0
2,820,703 + DVU2716 0.13 -0.4
2,820,717 - DVU2716 0.14 -0.2
2,820,732 + DVU2716 0.15 +0.2
2,820,745 - DVU2716 0.16 -0.1
2,820,753 + DVU2716 0.16 -0.2
2,820,761 - DVU2716 0.17 +0.3
2,820,801 - DVU2716 0.20 -0.1
2,820,865 + DVU2716 0.24 -0.1
2,820,912 - DVU2716 0.27 -0.3
2,820,914 - DVU2716 0.28 +0.2
2,820,940 - DVU2716 0.29 -0.4
2,821,088 - DVU2716 0.40 -1.5
2,821,090 - DVU2716 0.40 +0.3
2,821,097 + DVU2716 0.40 -0.2
2,821,097 + DVU2716 0.40 +0.9
2,821,097 + DVU2716 0.40 +0.2
2,821,097 + DVU2716 0.40 +0.4
2,821,105 + DVU2716 0.41 -0.2
2,821,232 - DVU2716 0.50 -0.2
2,821,262 + DVU2716 0.52 -0.1
2,821,272 - DVU2716 0.53 -2.2
2,821,272 - DVU2716 0.53 -0.6
2,821,272 - DVU2716 0.53 +0.6
2,821,287 + DVU2716 0.54 -0.7
2,821,287 + DVU2716 0.54 -0.3
2,821,287 + DVU2716 0.54 -0.3
2,821,329 - DVU2716 0.57 +1.5
2,821,329 - DVU2716 0.57 -1.1
2,821,340 + DVU2716 0.58 +0.4
2,821,358 - DVU2716 0.59 +2.1
2,821,435 + DVU2716 0.64 +0.1
2,821,477 + DVU2716 0.67 -0.0

Or see this region's nucleotide sequence