Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2665

Experiment: MoLS4 with L-Serine (N) without Molybdate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2663 and pstB-2 are separated by 2 nucleotidespstB-2 and DVU2665 are separated by 31 nucleotidesDVU2665 and DVU2666 are separated by 35 nucleotidesDVU2666 and pstS overlap by 4 nucleotides DVU2663: DVU2663 - conserved hypothetical protein (TIGR), at 2,774,924 to 2,775,400 DVU2663 DVU2664: pstB-2 - phosphate ABC transporter, ATP-binding protein (TIGR), at 2,775,403 to 2,776,269 pstB-2 DVU2665: DVU2665 - phosphate ABC transporter, permease protein, putative (TIGR), at 2,776,301 to 2,777,185 DVU2665 DVU2666: DVU2666 - phosphate ABC transporter, permease protein, putative (TIGR), at 2,777,221 to 2,778,096 DVU2666 DVU2667: pstS - phosphate ABC transporter, periplasmic phosphate-binding protein (TIGR), at 2,778,093 to 2,778,971 pstS Position (kb) 2776 2777 2778Strain fitness (log2 ratio) -1 0 1 2at 2775.341 kb on + strand, within DVU2663at 2775.354 kb on + strandat 2775.361 kb on + strandat 2775.362 kb on - strandat 2775.406 kb on + strandat 2775.444 kb on + strandat 2775.452 kb on - strandat 2775.468 kb on - strandat 2775.476 kb on - strandat 2775.495 kb on + strand, within pstB-2at 2775.505 kb on + strand, within pstB-2at 2775.546 kb on + strand, within pstB-2at 2775.554 kb on + strand, within pstB-2at 2775.602 kb on + strand, within pstB-2at 2775.627 kb on - strand, within pstB-2at 2775.684 kb on - strand, within pstB-2at 2775.703 kb on - strand, within pstB-2at 2775.705 kb on + strand, within pstB-2at 2775.705 kb on + strand, within pstB-2at 2775.705 kb on + strand, within pstB-2at 2775.705 kb on + strand, within pstB-2at 2775.713 kb on - strand, within pstB-2at 2775.713 kb on - strand, within pstB-2at 2775.713 kb on - strand, within pstB-2at 2775.730 kb on + strand, within pstB-2at 2775.730 kb on + strand, within pstB-2at 2775.738 kb on + strand, within pstB-2at 2775.823 kb on + strand, within pstB-2at 2775.826 kb on - strand, within pstB-2at 2775.833 kb on - strand, within pstB-2at 2775.900 kb on + strand, within pstB-2at 2775.908 kb on - strand, within pstB-2at 2775.926 kb on + strand, within pstB-2at 2776.009 kb on + strand, within pstB-2at 2776.021 kb on + strand, within pstB-2at 2776.107 kb on - strand, within pstB-2at 2776.176 kb on + strand, within pstB-2at 2776.185 kb on + strandat 2776.264 kb on - strandat 2776.283 kb on - strandat 2776.292 kb on + strandat 2776.320 kb on - strandat 2776.339 kb on - strandat 2776.413 kb on + strand, within DVU2665at 2776.473 kb on + strand, within DVU2665at 2776.507 kb on - strand, within DVU2665at 2776.507 kb on - strand, within DVU2665at 2776.582 kb on + strand, within DVU2665at 2776.588 kb on - strand, within DVU2665at 2776.588 kb on - strand, within DVU2665at 2776.588 kb on - strand, within DVU2665at 2776.698 kb on + strand, within DVU2665at 2776.803 kb on - strand, within DVU2665at 2776.832 kb on + strand, within DVU2665at 2776.866 kb on - strand, within DVU2665at 2776.929 kb on + strand, within DVU2665at 2776.937 kb on - strand, within DVU2665at 2776.992 kb on + strand, within DVU2665at 2777.000 kb on - strand, within DVU2665at 2777.010 kb on - strand, within DVU2665at 2777.018 kb on - strand, within DVU2665at 2777.019 kb on + strand, within DVU2665at 2777.087 kb on + strand, within DVU2665at 2777.123 kb on + strandat 2777.169 kb on + strandat 2777.459 kb on - strand, within DVU2666at 2777.489 kb on + strand, within DVU2666at 2777.512 kb on - strand, within DVU2666at 2777.531 kb on + strand, within DVU2666at 2777.532 kb on + strand, within DVU2666at 2777.539 kb on - strand, within DVU2666at 2777.660 kb on + strand, within DVU2666at 2777.676 kb on + strand, within DVU2666at 2777.684 kb on - strand, within DVU2666at 2777.684 kb on - strand, within DVU2666at 2777.684 kb on - strand, within DVU2666at 2777.685 kb on - strand, within DVU2666at 2777.691 kb on + strand, within DVU2666at 2777.699 kb on - strand, within DVU2666at 2777.766 kb on + strand, within DVU2666at 2777.780 kb on + strand, within DVU2666at 2777.780 kb on - strand, within DVU2666at 2777.801 kb on + strand, within DVU2666at 2777.808 kb on + strand, within DVU2666at 2777.808 kb on + strand, within DVU2666at 2777.816 kb on - strand, within DVU2666at 2777.816 kb on - strand, within DVU2666at 2777.816 kb on - strand, within DVU2666at 2777.881 kb on + strand, within DVU2666at 2777.897 kb on + strand, within DVU2666at 2777.910 kb on + strand, within DVU2666at 2777.988 kb on - strand, within DVU2666at 2778.013 kb on + strandat 2778.041 kb on + strandat 2778.067 kb on - strandat 2778.093 kb on + strandat 2778.111 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Serine (N) without Molybdate
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2,775,341 + DVU2663 0.87 -0.2
2,775,354 + +1.5
2,775,361 + -0.8
2,775,362 - -0.1
2,775,406 + +0.5
2,775,444 + -1.5
2,775,452 - +0.0
2,775,468 - -0.2
2,775,476 - -0.2
2,775,495 + pstB-2 DVU2664 0.11 +0.1
2,775,505 + pstB-2 DVU2664 0.12 -0.4
2,775,546 + pstB-2 DVU2664 0.16 -0.0
2,775,554 + pstB-2 DVU2664 0.17 +0.1
2,775,602 + pstB-2 DVU2664 0.23 +0.3
2,775,627 - pstB-2 DVU2664 0.26 -0.0
2,775,684 - pstB-2 DVU2664 0.32 -1.3
2,775,703 - pstB-2 DVU2664 0.35 -0.1
2,775,705 + pstB-2 DVU2664 0.35 -0.0
2,775,705 + pstB-2 DVU2664 0.35 -0.3
2,775,705 + pstB-2 DVU2664 0.35 +0.2
2,775,705 + pstB-2 DVU2664 0.35 -0.5
2,775,713 - pstB-2 DVU2664 0.36 -0.2
2,775,713 - pstB-2 DVU2664 0.36 -0.3
2,775,713 - pstB-2 DVU2664 0.36 -0.3
2,775,730 + pstB-2 DVU2664 0.38 -0.2
2,775,730 + pstB-2 DVU2664 0.38 +0.1
2,775,738 + pstB-2 DVU2664 0.39 -0.7
2,775,823 + pstB-2 DVU2664 0.48 +0.9
2,775,826 - pstB-2 DVU2664 0.49 -0.2
2,775,833 - pstB-2 DVU2664 0.50 -0.1
2,775,900 + pstB-2 DVU2664 0.57 +1.5
2,775,908 - pstB-2 DVU2664 0.58 +0.1
2,775,926 + pstB-2 DVU2664 0.60 -0.3
2,776,009 + pstB-2 DVU2664 0.70 -0.3
2,776,021 + pstB-2 DVU2664 0.71 -0.8
2,776,107 - pstB-2 DVU2664 0.81 +0.1
2,776,176 + pstB-2 DVU2664 0.89 -0.3
2,776,185 + -0.6
2,776,264 - +0.3
2,776,283 - -0.0
2,776,292 + -0.7
2,776,320 - -0.1
2,776,339 - -0.0
2,776,413 + DVU2665 0.13 +0.0
2,776,473 + DVU2665 0.19 -0.7
2,776,507 - DVU2665 0.23 -0.0
2,776,507 - DVU2665 0.23 -0.1
2,776,582 + DVU2665 0.32 -0.2
2,776,588 - DVU2665 0.32 -0.7
2,776,588 - DVU2665 0.32 -0.2
2,776,588 - DVU2665 0.32 -0.2
2,776,698 + DVU2665 0.45 -0.0
2,776,803 - DVU2665 0.57 -0.3
2,776,832 + DVU2665 0.60 -0.4
2,776,866 - DVU2665 0.64 -0.4
2,776,929 + DVU2665 0.71 -0.1
2,776,937 - DVU2665 0.72 -0.4
2,776,992 + DVU2665 0.78 -0.2
2,777,000 - DVU2665 0.79 -0.1
2,777,010 - DVU2665 0.80 +0.5
2,777,018 - DVU2665 0.81 -0.1
2,777,019 + DVU2665 0.81 -0.4
2,777,087 + DVU2665 0.89 +0.6
2,777,123 + +1.1
2,777,169 + -0.1
2,777,459 - DVU2666 0.27 -0.2
2,777,489 + DVU2666 0.31 +0.1
2,777,512 - DVU2666 0.33 +0.8
2,777,531 + DVU2666 0.35 +1.0
2,777,532 + DVU2666 0.36 +0.2
2,777,539 - DVU2666 0.36 +2.1
2,777,660 + DVU2666 0.50 -0.5
2,777,676 + DVU2666 0.52 -0.1
2,777,684 - DVU2666 0.53 -1.1
2,777,684 - DVU2666 0.53 -0.3
2,777,684 - DVU2666 0.53 +1.9
2,777,685 - DVU2666 0.53 +1.9
2,777,691 + DVU2666 0.54 -0.1
2,777,699 - DVU2666 0.55 +0.1
2,777,766 + DVU2666 0.62 -0.3
2,777,780 + DVU2666 0.64 -0.7
2,777,780 - DVU2666 0.64 +0.9
2,777,801 + DVU2666 0.66 -0.3
2,777,808 + DVU2666 0.67 -0.7
2,777,808 + DVU2666 0.67 -0.1
2,777,816 - DVU2666 0.68 -0.2
2,777,816 - DVU2666 0.68 -1.1
2,777,816 - DVU2666 0.68 -0.0
2,777,881 + DVU2666 0.75 -0.1
2,777,897 + DVU2666 0.77 +0.4
2,777,910 + DVU2666 0.79 +0.1
2,777,988 - DVU2666 0.88 +0.8
2,778,013 + +0.9
2,778,041 + -1.0
2,778,067 - -0.7
2,778,093 + +0.6
2,778,111 - -0.4

Or see this region's nucleotide sequence